Wall clock time and date at job start Sat Apr 11 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47159 * 2 1 4 4 O 1.42911 * 109.46946 * 240.00634 * 2 1 3 5 5 C 1.52999 * 109.47580 * 120.00551 * 2 1 3 6 6 H 1.08996 * 109.70206 * 85.81407 * 5 2 1 7 7 C 1.52759 * 109.50709 * 325.69199 * 5 2 1 8 8 C 1.53040 * 109.38186 * 185.70573 * 7 5 2 9 9 C 1.53034 * 109.53703 * 61.24393 * 8 7 5 10 10 C 1.53188 * 109.31424 * 298.63209 * 9 8 7 11 11 N 1.46923 * 108.77622 * 54.63517 * 10 9 8 12 12 S 1.65600 * 120.63295 * 126.36766 * 11 10 9 13 13 O 1.42104 * 106.40119 * 146.97013 * 12 11 10 14 14 O 1.42098 * 106.40302 * 14.04948 * 12 11 10 15 15 C 1.76197 * 107.21933 * 260.50863 * 12 11 10 16 16 C 1.38661 * 119.87616 * 79.19945 * 15 12 11 17 17 C 1.38611 * 120.50006 * 180.02562 * 16 15 12 18 18 C 1.37639 * 120.25346 * 359.97438 * 17 16 15 19 19 C 1.40704 * 119.74139 * 359.97438 * 18 17 16 20 20 C 1.41387 * 120.24349 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00147 * 151.58659 * 20 19 18 22 22 C 1.39947 * 120.00204 * 331.31388 * 20 19 18 23 23 N 1.30822 * 119.99683 * 348.98383 * 22 20 19 24 24 Si 1.86802 * 120.00125 * 168.98510 * 22 20 19 25 25 H 1.48501 * 109.47154 * 59.99740 * 24 22 20 26 26 H 1.48501 * 109.46853 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47187 * 299.99814 * 24 22 20 28 28 C 1.37603 * 119.87677 * 259.45730 * 15 12 11 29 29 H 1.08996 * 109.47048 * 306.35126 * 1 2 3 30 30 H 1.08999 * 109.47593 * 66.36062 * 1 2 3 31 31 H 1.09005 * 109.47143 * 186.36162 * 1 2 3 32 32 H 0.96702 * 113.99718 * 305.15282 * 4 2 1 33 33 H 1.09002 * 109.56352 * 65.67337 * 7 5 2 34 34 H 1.08997 * 109.38989 * 305.63315 * 7 5 2 35 35 H 1.08999 * 109.45960 * 301.21921 * 8 7 5 36 36 H 1.09001 * 109.46037 * 181.26588 * 8 7 5 37 37 H 1.09001 * 109.49924 * 178.68635 * 9 8 7 38 38 H 1.09004 * 109.49931 * 58.58266 * 9 8 7 39 39 H 1.09004 * 109.58764 * 294.85044 * 10 9 8 40 40 H 1.08999 * 109.70617 * 174.49375 * 10 9 8 41 41 H 1.07999 * 119.74933 * 0.02562 * 16 15 12 42 42 H 1.08002 * 119.87314 * 179.97438 * 17 16 15 43 43 H 1.07997 * 120.13301 * 180.02562 * 18 17 16 44 44 H 0.97006 * 119.99828 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.12557 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 2.0920 -1.7933 1.0590 7 6 1.0888 -0.4573 2.4149 8 6 1.6738 -1.0599 3.6942 9 6 3.0172 -0.3958 4.0049 10 6 3.9927 -0.6634 2.8545 11 7 3.3756 -0.2178 1.5978 12 16 4.1673 0.8374 0.5968 13 8 3.7901 0.4924 -0.7291 14 8 5.5181 0.8711 1.0367 15 6 3.5049 2.4416 0.9010 16 6 3.9227 3.1626 2.0093 17 6 3.4097 4.4254 2.2613 18 6 2.4785 4.9779 1.4116 19 6 2.0480 4.2558 0.2833 20 6 1.0924 4.8134 -0.5970 21 1 1.0877 4.5296 -1.6391 22 6 0.1488 5.7286 -0.1168 23 7 0.0073 5.9070 1.1714 24 14 -0.9086 6.6956 -1.3153 25 1 -1.7087 5.7548 -2.1400 26 1 -1.8216 7.5902 -0.5595 27 1 -0.0364 7.5099 -2.1993 28 6 2.5710 2.9719 0.0408 29 1 -0.3633 0.6091 0.8277 30 1 -0.3634 0.4121 -0.9414 31 1 -0.3634 -1.0214 0.1139 32 1 1.6578 -1.5693 -1.2738 33 1 0.1212 -0.9141 2.2070 34 1 0.9635 0.6178 2.5433 35 1 1.8214 -2.1310 3.5567 36 1 0.9855 -0.8918 4.5225 37 1 3.4222 -0.8089 4.9288 38 1 2.8742 0.6788 4.1181 39 1 4.2070 -1.7307 2.7980 40 1 4.9185 -0.1132 3.0222 41 1 4.6533 2.7370 2.6812 42 1 3.7420 4.9779 3.1278 43 1 2.0805 5.9621 1.6095 44 1 -0.6470 6.5411 1.5043 45 1 2.2435 2.4067 -0.8192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:52 Heat of formation + Delta-G solvation = -96.234507 kcal Electronic energy + Delta-G solvation = -29827.210816 eV Core-core repulsion = 25936.588108 eV Total energy + Delta-G solvation = -3890.622707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.31086 -37.68502 -37.03225 -35.88095 -35.09158 -33.82517 -32.35753 -32.11653 -30.10498 -29.85645 -28.71301 -25.51018 -24.50134 -24.00035 -21.85969 -21.40604 -20.84460 -20.29453 -18.51063 -18.10575 -16.79228 -16.17180 -16.06581 -15.70289 -15.24817 -14.80873 -14.72161 -14.41617 -14.18196 -13.95014 -13.62333 -13.49095 -13.37515 -13.26701 -12.88618 -12.55873 -12.01253 -11.94113 -11.85345 -11.61576 -11.50093 -11.35064 -11.30411 -11.21374 -10.98452 -10.97005 -10.92529 -10.88756 -10.78571 -10.62291 -10.56435 -9.99598 -9.75041 -9.50815 -9.44173 -9.38390 -8.70918 -7.99861 -7.65957 -6.87838 -4.55995 1.07620 2.20203 2.61788 2.99639 3.02897 3.07005 3.48223 3.83908 4.34113 4.43397 4.53845 4.66886 4.79277 4.96107 5.08091 5.22177 5.24618 5.28091 5.38687 5.41838 5.48296 5.57929 5.70093 5.76841 5.80629 5.94138 5.97378 6.03224 6.08900 6.12122 6.16138 6.32494 6.35477 6.38143 6.51058 6.64073 6.74067 6.78136 6.97907 7.06935 7.21448 7.36303 7.70709 7.81869 7.93885 8.12332 8.40499 8.67587 8.71853 10.06956 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.004840 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.509745 B = 5784.074548 C = 6138.653308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 H 0.123 0.877 4 O -0.509 6.509 5 C 0.135 3.865 6 H 0.075 0.925 7 C -0.135 4.135 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.120 3.880 11 N -0.994 5.994 12 S 2.671 3.329 13 O -0.929 6.929 14 O -0.980 6.980 15 C -0.639 4.639 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.110 4.110 19 C 0.094 3.906 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.074 3.926 23 N -0.804 5.804 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.132 4.132 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.348 0.652 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.282 0.718 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -11.343 4.922 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.001 4.001 3 H 0.141 0.859 4 O -0.310 6.310 5 C 0.028 3.972 6 H 0.093 0.907 7 C -0.174 4.174 8 C -0.151 4.151 9 C -0.176 4.176 10 C -0.005 4.005 11 N -0.830 5.830 12 S 2.767 3.233 13 O -0.919 6.919 14 O -0.970 6.970 15 C -0.730 4.730 16 C -0.160 4.160 17 C -0.143 4.143 18 C -0.130 4.130 19 C 0.090 3.910 20 C -0.491 4.491 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.430 5.430 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.153 4.153 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.192 0.808 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.144 0.856 44 H 0.093 0.907 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.240 -10.901 4.405 11.759 hybrid contribution -1.390 0.581 0.278 1.531 sum -1.629 -10.320 4.683 11.449 Atomic orbital electron populations 1.22525 0.95505 1.01865 1.03861 1.22800 0.94090 0.99214 0.84041 0.85950 1.87198 1.71171 1.29914 1.42740 1.21671 0.81745 0.98556 0.95198 0.90739 1.22017 0.98149 1.02785 0.94450 1.21447 0.96671 0.99513 0.97509 1.21933 0.95843 1.02138 0.97716 1.21382 0.96122 1.00198 0.82798 1.57903 1.28446 1.61396 1.35299 1.02524 0.73060 0.73947 0.73725 1.93736 1.82631 1.82357 1.33184 1.93479 1.33223 1.87595 1.82751 1.30042 1.13968 1.22324 1.06632 1.20024 1.02257 0.96755 0.96924 1.20828 0.98646 0.95590 0.99259 1.21695 0.95380 0.99988 0.95933 1.17684 0.90982 0.89854 0.92439 1.19573 1.11543 1.21113 0.96844 0.90042 1.25894 0.97209 0.95543 0.95640 1.69735 1.30186 1.29367 1.13662 0.86276 0.79512 0.79750 0.80729 1.18850 1.20298 1.18748 1.20923 0.98897 0.96303 0.99195 0.90842 0.91169 0.92627 0.80794 0.90649 0.90438 0.92214 0.91906 0.91158 0.90894 0.91651 0.88948 0.88144 0.88437 0.85570 0.90668 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.19 37.16 0.30 -2.14 16 2 C 0.06 0.94 2.58 -26.73 -0.07 0.87 16 3 H 0.12 2.37 1.89 -50.58 -0.10 2.27 16 4 O -0.51 -8.52 10.52 -60.12 -0.63 -9.15 16 5 C 0.13 1.88 2.96 -67.82 -0.20 1.68 16 6 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 7 C -0.14 -1.66 4.06 -26.83 -0.11 -1.77 16 8 C -0.11 -1.20 5.89 -26.69 -0.16 -1.36 16 9 C -0.14 -1.57 6.08 -26.62 -0.16 -1.73 16 10 C 0.12 1.58 6.43 -3.71 -0.02 1.55 16 11 N -0.99 -15.62 3.30 -106.71 -0.35 -15.97 16 12 S 2.67 52.97 5.13 -107.50 -0.55 52.42 16 13 O -0.93 -20.11 12.04 -67.30 -0.81 -20.93 16 14 O -0.98 -21.03 16.05 -57.17 -0.92 -21.95 16 15 C -0.64 -14.09 5.62 -39.66 -0.22 -14.31 16 16 C -0.14 -3.01 9.53 -39.29 -0.37 -3.38 16 17 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 18 C -0.11 -2.71 8.66 -38.87 -0.34 -3.05 16 19 C 0.09 2.39 5.55 -106.83 -0.59 1.80 16 20 C -0.46 -11.70 9.06 -37.74 -0.34 -12.04 16 21 H 0.08 2.01 7.87 -52.48 -0.41 1.59 16 22 C 0.07 1.77 5.25 -17.34 -0.09 1.68 16 23 N -0.80 -19.59 10.85 55.55 0.60 -18.98 16 24 Si 0.91 18.05 29.57 -169.99 -5.03 13.02 16 25 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 28 C -0.13 -3.15 7.78 -38.87 -0.30 -3.45 16 29 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.58 7.83 -51.93 -0.41 0.17 16 32 H 0.35 4.06 9.01 45.56 0.41 4.47 16 33 H 0.07 0.78 6.79 -51.93 -0.35 0.43 16 34 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.27 6.88 -51.93 -0.36 0.91 16 41 H 0.10 1.96 7.87 -52.49 -0.41 1.55 16 42 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.13 3.17 6.23 -52.49 -0.33 2.84 16 44 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 45 H 0.12 2.84 6.17 -52.49 -0.32 2.52 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -30.54 355.01 -10.97 -41.51 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.56 Total: 13.50 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: -3.08 Total: -38.82 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.25 Total: -34.96 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.36 Total: -52.03 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 52.97 SS G_CDS: -0.55 Total: 52.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.54 -10.97 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.726 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds