Wall clock time and date at job start Sat Apr 11 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47159 * 2 1 4 4 O 1.42911 * 109.46946 * 240.00634 * 2 1 3 5 5 C 1.52999 * 109.47580 * 120.00551 * 2 1 3 6 6 H 1.08996 * 109.70206 * 85.81407 * 5 2 1 7 7 C 1.52759 * 109.50709 * 325.69199 * 5 2 1 8 8 C 1.53040 * 109.38186 * 185.70573 * 7 5 2 9 9 C 1.53034 * 109.53703 * 61.24393 * 8 7 5 10 10 C 1.53188 * 109.31424 * 298.63209 * 9 8 7 11 11 N 1.46923 * 108.77622 * 54.63517 * 10 9 8 12 12 S 1.65600 * 120.63295 * 126.36766 * 11 10 9 13 13 O 1.42104 * 106.40119 * 146.97013 * 12 11 10 14 14 O 1.42098 * 106.40302 * 14.04948 * 12 11 10 15 15 C 1.76197 * 107.21933 * 260.50863 * 12 11 10 16 16 C 1.38661 * 119.87616 * 79.19945 * 15 12 11 17 17 C 1.38611 * 120.50006 * 180.02562 * 16 15 12 18 18 C 1.37639 * 120.25346 * 359.97438 * 17 16 15 19 19 C 1.40704 * 119.74139 * 359.97438 * 18 17 16 20 20 C 1.41387 * 120.24349 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00147 * 151.58659 * 20 19 18 22 22 C 1.39947 * 120.00204 * 331.31388 * 20 19 18 23 23 N 1.30822 * 119.99683 * 348.98383 * 22 20 19 24 24 Si 1.86802 * 120.00125 * 168.98510 * 22 20 19 25 25 H 1.48501 * 109.47154 * 59.99740 * 24 22 20 26 26 H 1.48501 * 109.46853 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47187 * 299.99814 * 24 22 20 28 28 C 1.37603 * 119.87677 * 259.45730 * 15 12 11 29 29 H 1.08996 * 109.47048 * 306.35126 * 1 2 3 30 30 H 1.08999 * 109.47593 * 66.36062 * 1 2 3 31 31 H 1.09005 * 109.47143 * 186.36162 * 1 2 3 32 32 H 0.96702 * 113.99718 * 305.15282 * 4 2 1 33 33 H 1.09002 * 109.56352 * 65.67337 * 7 5 2 34 34 H 1.08997 * 109.38989 * 305.63315 * 7 5 2 35 35 H 1.08999 * 109.45960 * 301.21921 * 8 7 5 36 36 H 1.09001 * 109.46037 * 181.26588 * 8 7 5 37 37 H 1.09001 * 109.49924 * 178.68635 * 9 8 7 38 38 H 1.09004 * 109.49931 * 58.58266 * 9 8 7 39 39 H 1.09004 * 109.58764 * 294.85044 * 10 9 8 40 40 H 1.08999 * 109.70617 * 174.49375 * 10 9 8 41 41 H 1.07999 * 119.74933 * 0.02562 * 16 15 12 42 42 H 1.08002 * 119.87314 * 179.97438 * 17 16 15 43 43 H 1.07997 * 120.13301 * 180.02562 * 18 17 16 44 44 H 0.97006 * 119.99828 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.12557 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 2.0920 -1.7933 1.0590 7 6 1.0888 -0.4573 2.4149 8 6 1.6738 -1.0599 3.6942 9 6 3.0172 -0.3958 4.0049 10 6 3.9927 -0.6634 2.8545 11 7 3.3756 -0.2178 1.5978 12 16 4.1673 0.8374 0.5968 13 8 3.7901 0.4924 -0.7291 14 8 5.5181 0.8711 1.0367 15 6 3.5049 2.4416 0.9010 16 6 3.9227 3.1626 2.0093 17 6 3.4097 4.4254 2.2613 18 6 2.4785 4.9779 1.4116 19 6 2.0480 4.2558 0.2833 20 6 1.0924 4.8134 -0.5970 21 1 1.0877 4.5296 -1.6391 22 6 0.1488 5.7286 -0.1168 23 7 0.0073 5.9070 1.1714 24 14 -0.9086 6.6956 -1.3153 25 1 -1.7087 5.7548 -2.1400 26 1 -1.8216 7.5902 -0.5595 27 1 -0.0364 7.5099 -2.1993 28 6 2.5710 2.9719 0.0408 29 1 -0.3633 0.6091 0.8277 30 1 -0.3634 0.4121 -0.9414 31 1 -0.3634 -1.0214 0.1139 32 1 1.6578 -1.5693 -1.2738 33 1 0.1212 -0.9141 2.2070 34 1 0.9635 0.6178 2.5433 35 1 1.8214 -2.1310 3.5567 36 1 0.9855 -0.8918 4.5225 37 1 3.4222 -0.8089 4.9288 38 1 2.8742 0.6788 4.1181 39 1 4.2070 -1.7307 2.7980 40 1 4.9185 -0.1132 3.0222 41 1 4.6533 2.7370 2.6812 42 1 3.7420 4.9779 3.1278 43 1 2.0805 5.9621 1.6095 44 1 -0.6470 6.5411 1.5043 45 1 2.2435 2.4067 -0.8192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:51 Heat of formation + Delta-G solvation = -116.250607 kcal Electronic energy + Delta-G solvation = -29828.078779 eV Core-core repulsion = 25936.588108 eV Total energy + Delta-G solvation = -3891.490670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.45841 -39.46282 -38.48453 -37.22409 -36.71946 -35.65230 -33.45515 -33.21148 -31.93017 -31.64963 -29.78572 -27.36816 -25.60866 -25.05892 -23.62088 -22.97168 -22.22128 -21.36388 -20.04648 -19.67996 -18.25183 -17.80216 -17.34672 -17.08904 -16.90776 -16.56633 -16.06423 -15.67803 -15.34695 -15.14271 -15.08894 -14.94187 -14.70416 -14.46975 -14.29522 -13.92492 -13.73934 -13.33770 -13.13878 -13.05128 -12.99454 -12.92673 -12.84625 -12.77917 -12.64488 -12.48159 -12.26648 -12.21149 -11.97411 -11.67933 -11.61931 -11.53968 -11.25365 -11.18224 -11.10079 -10.61853 -9.95168 -9.74913 -9.51526 -8.68508 -6.47746 -0.46349 0.40309 0.81916 1.36505 1.45528 1.47695 2.06817 2.17596 2.59242 2.82242 3.35062 3.44990 3.50713 3.61484 3.93779 4.07680 4.13102 4.19584 4.24010 4.30326 4.36376 4.37456 4.47771 4.53745 4.74372 4.78916 4.81871 4.87207 4.88163 4.94912 4.99387 5.07912 5.16331 5.20783 5.23346 5.28039 5.31103 5.35565 5.40280 5.53728 5.55280 5.77455 5.85884 5.94186 6.09258 6.51858 6.80027 6.84116 7.14611 8.28213 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.004840 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.509745 B = 5784.074548 C = 6138.653308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.050 3.950 3 H 0.086 0.914 4 O -0.534 6.534 5 C 0.135 3.865 6 H 0.108 0.892 7 C -0.133 4.133 8 C -0.110 4.110 9 C -0.136 4.136 10 C 0.110 3.890 11 N -0.987 5.987 12 S 2.692 3.308 13 O -0.949 6.949 14 O -0.998 6.998 15 C -0.646 4.646 16 C -0.141 4.141 17 C -0.125 4.125 18 C -0.133 4.133 19 C 0.065 3.935 20 C -0.497 4.497 21 H 0.074 0.926 22 C 0.039 3.961 23 N -0.828 5.828 24 Si 0.981 3.019 25 H -0.260 1.260 26 H -0.264 1.264 27 H -0.263 1.263 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.370 0.630 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.290 0.710 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 -13.519 6.265 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 H 0.104 0.896 4 O -0.339 6.339 5 C 0.029 3.971 6 H 0.126 0.874 7 C -0.172 4.172 8 C -0.148 4.148 9 C -0.175 4.175 10 C -0.014 4.014 11 N -0.827 5.827 12 S 2.785 3.215 13 O -0.939 6.939 14 O -0.988 6.988 15 C -0.733 4.733 16 C -0.161 4.161 17 C -0.144 4.144 18 C -0.152 4.152 19 C 0.062 3.938 20 C -0.527 4.527 21 H 0.092 0.908 22 C -0.176 4.176 23 N -0.454 5.454 24 Si 0.802 3.198 25 H -0.185 1.185 26 H -0.188 1.188 27 H -0.187 1.187 28 C -0.161 4.161 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.217 0.783 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.901 -13.058 5.764 14.302 hybrid contribution -1.123 1.117 -0.083 1.586 sum -2.024 -11.941 5.681 13.377 Atomic orbital electron populations 1.22459 0.93906 1.04032 1.02705 1.22743 0.95462 0.97795 0.85043 0.89625 1.87132 1.71843 1.31647 1.43250 1.21860 0.80807 0.99716 0.94697 0.87430 1.22024 0.99102 1.01175 0.94915 1.21467 0.96056 1.00573 0.96677 1.21951 0.96268 1.01060 0.98239 1.21729 0.96074 1.01750 0.81894 1.57664 1.29264 1.59810 1.35956 1.01878 0.72581 0.73347 0.73698 1.93712 1.82911 1.82261 1.35055 1.93446 1.34487 1.87744 1.83119 1.30519 1.12796 1.24134 1.05901 1.20374 1.02199 0.96489 0.97053 1.21138 0.97677 0.96004 0.99567 1.21675 0.96849 0.99905 0.96801 1.18023 0.91732 0.90766 0.93247 1.19765 1.13010 1.23152 0.96724 0.90772 1.26655 0.97889 0.95749 0.97302 1.69778 1.30805 1.29761 1.15038 0.85261 0.77817 0.78297 0.78468 1.18470 1.18825 1.18699 1.20898 0.99780 0.95865 0.99574 0.91654 0.92715 0.88675 0.78335 0.88246 0.93697 0.89752 0.90734 0.88288 0.93256 0.88550 0.89905 0.85780 0.85599 0.86698 0.89889 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 8.19 71.98 0.59 -3.99 16 2 C 0.05 1.58 2.58 30.59 0.08 1.66 16 3 H 0.09 3.43 1.89 -3.24 -0.01 3.43 16 4 O -0.53 -17.58 10.52 -125.18 -1.32 -18.89 16 5 C 0.13 3.44 2.96 44.83 0.13 3.58 16 6 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 7 C -0.13 -2.96 4.06 30.53 0.12 -2.83 16 8 C -0.11 -1.91 5.89 30.62 0.18 -1.73 16 9 C -0.14 -2.71 6.08 30.67 0.19 -2.52 16 10 C 0.11 2.57 6.43 86.36 0.56 3.12 16 11 N -0.99 -29.43 3.30 -491.53 -1.62 -31.05 16 12 S 2.69 106.81 5.13 -56.49 -0.29 106.52 16 13 O -0.95 -41.73 12.04 -118.31 -1.42 -43.15 16 14 O -1.00 -42.39 16.05 -128.00 -2.05 -44.44 16 15 C -0.65 -29.24 5.62 22.22 0.12 -29.12 16 16 C -0.14 -6.14 9.53 22.46 0.21 -5.93 16 17 C -0.12 -5.64 10.02 22.22 0.22 -5.42 16 18 C -0.13 -6.80 8.66 22.73 0.20 -6.60 16 19 C 0.07 3.52 5.55 -21.29 -0.12 3.40 16 20 C -0.50 -26.58 9.06 23.46 0.21 -26.37 16 21 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 22 C 0.04 1.90 5.25 85.26 0.45 2.34 16 23 N -0.83 -41.48 10.85 21.83 0.24 -41.25 16 24 Si 0.98 37.58 29.57 68.60 2.03 39.61 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 28 C -0.14 -7.06 7.78 22.73 0.18 -6.88 16 29 H 0.06 1.81 6.85 -2.39 -0.02 1.80 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.70 7.83 -2.38 -0.02 1.68 16 32 H 0.37 7.95 9.01 -74.06 -0.67 7.29 16 33 H 0.10 1.72 6.79 -2.39 -0.02 1.70 16 34 H 0.04 1.29 7.86 -2.39 -0.02 1.28 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.11 6.88 -2.39 -0.02 2.10 16 41 H 0.12 4.75 7.87 -2.91 -0.02 4.73 16 42 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.12 6.05 6.23 -2.91 -0.02 6.03 16 44 H 0.29 13.15 8.30 -92.70 -0.77 12.38 16 45 H 0.11 5.69 6.17 -2.91 -0.02 5.67 16 Total: -1.00 -69.27 355.01 -0.76 -70.04 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.35 Total: 39.90 kcal Atomic # 6 Polarization: -80.61 SS G_CDS: 3.32 Total: -77.29 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.38 Total: -72.29 kcal Atomic # 8 Polarization: -101.69 SS G_CDS: -4.80 Total: -106.49 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 106.81 SS G_CDS: -0.29 Total: 106.52 kcal Total: -69.27 -0.76 -70.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.213 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds