Wall clock time and date at job start Sat Apr 11 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00125 * 2 1 4 4 C 1.53003 * 109.47061 * 84.99883 * 3 2 1 5 5 C 1.53169 * 109.54544 * 294.55846 * 4 3 2 6 6 C 1.53097 * 109.16498 * 183.15074 * 5 4 3 7 7 O 1.42906 * 109.41264 * 57.60846 * 6 5 4 8 8 C 1.42900 * 114.09614 * 298.84053 * 7 6 5 9 9 C 1.53088 * 109.41362 * 61.16133 * 8 7 6 10 10 S 1.65600 * 119.99846 * 180.02562 * 2 1 3 11 11 O 1.42098 * 106.40028 * 23.54045 * 10 2 1 12 12 O 1.42101 * 106.39916 * 156.46015 * 10 2 1 13 13 C 1.76205 * 107.21901 * 269.99963 * 10 2 1 14 14 C 1.38651 * 119.87166 * 269.73025 * 13 10 2 15 15 C 1.38618 * 120.49705 * 179.72268 * 14 13 10 16 16 C 1.37638 * 120.24573 * 0.54804 * 15 14 13 17 17 C 1.40692 * 119.74801 * 359.72984 * 16 15 14 18 18 C 1.41394 * 120.24484 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99712 * 155.24525 * 18 17 16 20 20 C 1.39943 * 120.00170 * 335.24701 * 18 17 16 21 21 N 1.30818 * 119.99702 * 342.25296 * 20 18 17 22 22 Si 1.86801 * 120.00136 * 162.25109 * 20 18 17 23 23 H 1.48501 * 109.46857 * 59.99914 * 22 20 18 24 24 H 1.48493 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47211 * 300.00290 * 22 20 18 26 26 C 1.37592 * 119.87484 * 89.99635 * 13 10 2 27 27 H 1.08997 * 109.47598 * 89.99715 * 1 2 3 28 28 H 1.08996 * 109.47171 * 210.00345 * 1 2 3 29 29 H 1.09007 * 109.46958 * 329.99684 * 1 2 3 30 30 H 1.09004 * 109.47114 * 325.00541 * 3 2 1 31 31 H 1.08996 * 109.47434 * 204.99721 * 3 2 1 32 32 H 1.09000 * 109.54049 * 54.82452 * 4 3 2 33 33 H 1.08999 * 109.52753 * 303.05581 * 5 4 3 34 34 H 1.09001 * 109.52824 * 63.24521 * 5 4 3 35 35 H 1.09005 * 109.47861 * 297.62520 * 6 5 4 36 36 H 1.09002 * 109.48416 * 177.59130 * 6 5 4 37 37 H 1.09001 * 109.48506 * 301.17563 * 8 7 6 38 38 H 1.08999 * 109.48924 * 181.14678 * 8 7 6 39 39 H 1.09007 * 109.52523 * 182.48350 * 9 8 7 40 40 H 1.09000 * 109.52677 * 62.29378 * 9 8 7 41 41 H 1.08001 * 119.75543 * 359.97438 * 14 13 10 42 42 H 1.08002 * 119.87508 * 180.25178 * 15 14 13 43 43 H 1.08007 * 120.12215 * 179.74609 * 16 15 14 44 44 H 0.97005 * 120.00225 * 179.97438 * 21 20 18 45 45 H 1.08006 * 120.12792 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 1.4370 5 6 0.9620 2.1150 2.0031 6 6 1.1248 2.6925 3.4116 7 8 1.9709 3.8430 3.3585 8 6 3.2910 3.5748 2.8816 9 6 3.2152 3.0328 1.4519 10 16 2.2930 -1.4342 -0.0006 11 8 1.4113 -2.4062 -0.5455 12 8 3.5759 -1.1565 -0.5450 13 6 2.5538 -1.8866 1.6822 14 6 3.6999 -1.4675 2.3404 15 6 3.9155 -1.8112 3.6659 16 6 2.9969 -2.5832 4.3401 17 6 1.8331 -3.0190 3.6806 18 6 0.8822 -3.8120 4.3634 19 1 -0.1483 -3.8176 4.0400 20 6 1.2763 -4.5896 5.4581 21 7 2.5418 -4.8644 5.6435 22 14 -0.0047 -5.2351 6.6547 23 1 -0.9688 -6.1003 5.9286 24 1 0.6654 -6.0246 7.7190 25 1 -0.7292 -4.0931 7.2681 26 6 1.6219 -2.6591 2.3366 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6501 2.0043 -0.5894 31 1 3.1858 1.1177 -0.4342 32 1 2.8090 1.0006 2.0492 33 1 0.4773 2.8510 1.3615 34 1 0.3530 1.2121 2.0478 35 1 1.5725 1.9417 4.0628 36 1 0.1481 2.9774 3.8029 37 1 3.7671 2.8356 3.5258 38 1 3.8750 4.4951 2.8910 39 1 4.2178 2.7861 1.1021 40 1 2.7761 3.7872 0.7990 41 1 4.4284 -0.8654 1.8176 42 1 4.8099 -1.4759 4.1699 43 1 3.1689 -2.8532 5.3717 44 1 2.8150 -5.4031 6.4025 45 1 0.7317 -2.9877 1.8208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:58 Heat of formation + Delta-G solvation = -110.472745 kcal Electronic energy + Delta-G solvation = -28818.697443 eV Core-core repulsion = 24927.457319 eV Total energy + Delta-G solvation = -3891.240123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.51834 -37.67998 -36.81383 -36.61743 -35.32761 -33.88281 -33.25975 -31.08933 -30.11914 -29.82893 -28.25677 -25.52363 -25.31501 -23.55210 -22.60135 -21.80160 -21.03206 -20.10491 -18.66743 -17.91734 -17.04743 -16.37425 -16.04678 -15.91696 -15.89292 -15.24752 -14.86258 -14.78635 -14.61801 -14.26163 -13.80847 -13.56587 -13.38602 -13.33570 -12.89061 -12.64104 -12.41950 -12.13250 -12.05791 -11.95065 -11.61090 -11.45659 -11.42334 -11.39192 -11.33352 -11.28792 -11.11234 -10.93750 -10.89260 -10.64152 -10.42461 -10.28053 -9.84670 -9.74786 -9.50864 -9.37330 -8.73704 -8.06631 -7.73552 -6.95479 -4.57105 0.94387 2.16203 2.60341 2.97284 2.99000 3.04802 3.42218 3.79958 3.88618 4.23142 4.38692 4.65963 4.66807 4.81160 4.87342 4.98865 5.06344 5.25036 5.35870 5.38207 5.41604 5.51837 5.59923 5.66563 5.68099 5.77574 5.83831 5.86400 5.89341 5.99798 6.02549 6.09775 6.12708 6.21360 6.36509 6.60602 6.65906 6.73388 6.89691 7.01353 7.18227 7.19421 7.34470 7.68609 7.76307 7.90472 8.36082 8.63471 8.68010 10.00158 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.004425 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.183439 B = 6325.956267 C = 7463.189968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.002 6.002 3 C 0.125 3.875 4 C -0.119 4.119 5 C -0.150 4.150 6 C 0.059 3.941 7 O -0.387 6.387 8 C 0.061 3.939 9 C -0.148 4.148 10 S 2.684 3.316 11 O -0.969 6.969 12 O -0.973 6.973 13 C -0.629 4.629 14 C -0.147 4.147 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.126 4.126 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.284 0.716 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 13.245 -4.200 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.838 5.838 3 C 0.000 4.000 4 C -0.139 4.139 5 C -0.188 4.188 6 C -0.018 4.018 7 O -0.306 6.306 8 C -0.016 4.016 9 C -0.187 4.187 10 S 2.781 3.219 11 O -0.959 6.959 12 O -0.964 6.964 13 C -0.721 4.721 14 C -0.168 4.168 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.090 3.910 18 C -0.490 4.490 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.095 0.905 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.579 12.839 -4.798 13.797 hybrid contribution -0.388 -0.718 1.351 1.579 sum -1.967 12.120 -3.447 12.754 Atomic orbital electron populations 1.21628 0.78670 1.03608 1.01862 1.57461 1.14950 1.21238 1.90157 1.21376 0.97522 0.85101 0.96038 1.21804 0.96361 0.97965 0.97804 1.22351 0.97591 1.01646 0.97171 1.22614 0.94686 0.88203 0.96293 1.87885 1.23198 1.33433 1.86106 1.22546 0.84425 1.00877 0.93747 1.22172 1.00780 0.97510 0.98189 1.01909 0.72680 0.72016 0.75320 1.93526 1.66288 1.58154 1.77940 1.93489 1.40242 1.84509 1.78151 1.29787 1.04892 1.14476 1.22948 1.20024 0.96282 1.04979 0.95535 1.20799 0.98681 0.99929 0.94564 1.21621 0.95325 0.96772 1.00034 1.17660 0.92634 0.90525 0.90203 1.19569 0.96538 1.22066 1.10850 0.90004 1.25931 0.96070 0.94631 0.97661 1.69771 1.17024 1.28374 1.26629 0.86299 0.81047 0.79468 0.79613 1.18785 1.20216 1.18703 1.20726 0.98297 1.01052 0.94684 0.92763 0.90718 0.90523 0.90331 0.88922 0.89374 0.91366 0.89807 0.92703 0.89126 0.92943 0.89153 0.90533 0.91053 0.87774 0.88503 0.85851 0.90461 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.43 59.85 0.56 1.62 16 2 N -1.00 -14.29 3.10 -121.76 -0.38 -14.67 16 3 C 0.13 1.51 5.21 -4.04 -0.02 1.49 16 4 C -0.12 -1.43 2.48 -90.44 -0.22 -1.66 16 5 C -0.15 -1.69 4.19 -26.59 -0.11 -1.81 16 6 C 0.06 0.70 6.84 37.21 0.25 0.95 16 7 O -0.39 -4.92 10.77 -35.23 -0.38 -5.30 16 8 C 0.06 0.66 6.84 37.20 0.25 0.91 16 9 C -0.15 -1.51 5.42 -26.59 -0.14 -1.65 16 10 S 2.68 50.44 5.65 -107.50 -0.61 49.84 16 11 O -0.97 -20.50 16.34 -57.17 -0.93 -21.43 16 12 O -0.97 -19.68 15.81 -57.17 -0.90 -20.58 16 13 C -0.63 -13.37 5.97 -39.66 -0.24 -13.60 16 14 C -0.15 -3.08 8.40 -39.29 -0.33 -3.41 16 15 C -0.12 -2.62 10.02 -39.66 -0.40 -3.01 16 16 C -0.12 -2.85 8.70 -38.87 -0.34 -3.19 16 17 C 0.09 2.34 5.57 -106.83 -0.60 1.75 16 18 C -0.46 -11.55 9.05 -37.74 -0.34 -11.90 16 19 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.55 10.97 55.55 0.61 -18.94 16 22 Si 0.91 17.77 29.60 -169.99 -5.03 12.73 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.13 -2.94 9.26 -38.87 -0.36 -3.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 29 H 0.08 0.74 5.43 -51.92 -0.28 0.46 16 30 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.09 1.16 6.91 -51.93 -0.36 0.80 16 32 H 0.09 1.26 6.98 -51.93 -0.36 0.90 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.98 5.80 -51.93 -0.30 0.68 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.98 7.59 -52.49 -0.40 1.58 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 43 H 0.12 3.06 6.18 -52.48 -0.32 2.73 16 44 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 45 H 0.11 2.46 7.60 -52.48 -0.40 2.06 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -29.89 367.88 -10.80 -40.69 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.61 Total: 7.21 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: -2.12 Total: -35.10 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.23 Total: -33.61 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -2.22 Total: -47.31 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.61 Total: 49.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.89 -10.80 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.779 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds