Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00125 * 2 1 4 4 C 1.53003 * 109.47061 * 84.99883 * 3 2 1 5 5 C 1.53169 * 109.54544 * 294.55846 * 4 3 2 6 6 C 1.53097 * 109.16498 * 183.15074 * 5 4 3 7 7 O 1.42906 * 109.41264 * 57.60846 * 6 5 4 8 8 C 1.42900 * 114.09614 * 298.84053 * 7 6 5 9 9 C 1.53088 * 109.41362 * 61.16133 * 8 7 6 10 10 S 1.65600 * 119.99846 * 180.02562 * 2 1 3 11 11 O 1.42098 * 106.40028 * 23.54045 * 10 2 1 12 12 O 1.42101 * 106.39916 * 156.46015 * 10 2 1 13 13 C 1.76205 * 107.21901 * 269.99963 * 10 2 1 14 14 C 1.38651 * 119.87166 * 269.73025 * 13 10 2 15 15 C 1.38618 * 120.49705 * 179.72268 * 14 13 10 16 16 C 1.37638 * 120.24573 * 0.54804 * 15 14 13 17 17 C 1.40692 * 119.74801 * 359.72984 * 16 15 14 18 18 C 1.41394 * 120.24484 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99712 * 155.24525 * 18 17 16 20 20 C 1.39943 * 120.00170 * 335.24701 * 18 17 16 21 21 N 1.30818 * 119.99702 * 342.25296 * 20 18 17 22 22 Si 1.86801 * 120.00136 * 162.25109 * 20 18 17 23 23 H 1.48501 * 109.46857 * 59.99914 * 22 20 18 24 24 H 1.48493 * 109.47164 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47211 * 300.00290 * 22 20 18 26 26 C 1.37592 * 119.87484 * 89.99635 * 13 10 2 27 27 H 1.08997 * 109.47598 * 89.99715 * 1 2 3 28 28 H 1.08996 * 109.47171 * 210.00345 * 1 2 3 29 29 H 1.09007 * 109.46958 * 329.99684 * 1 2 3 30 30 H 1.09004 * 109.47114 * 325.00541 * 3 2 1 31 31 H 1.08996 * 109.47434 * 204.99721 * 3 2 1 32 32 H 1.09000 * 109.54049 * 54.82452 * 4 3 2 33 33 H 1.08999 * 109.52753 * 303.05581 * 5 4 3 34 34 H 1.09001 * 109.52824 * 63.24521 * 5 4 3 35 35 H 1.09005 * 109.47861 * 297.62520 * 6 5 4 36 36 H 1.09002 * 109.48416 * 177.59130 * 6 5 4 37 37 H 1.09001 * 109.48506 * 301.17563 * 8 7 6 38 38 H 1.08999 * 109.48924 * 181.14678 * 8 7 6 39 39 H 1.09007 * 109.52523 * 182.48350 * 9 8 7 40 40 H 1.09000 * 109.52677 * 62.29378 * 9 8 7 41 41 H 1.08001 * 119.75543 * 359.97438 * 14 13 10 42 42 H 1.08002 * 119.87508 * 180.25178 * 15 14 13 43 43 H 1.08007 * 120.12215 * 179.74609 * 16 15 14 44 44 H 0.97005 * 120.00225 * 179.97438 * 21 20 18 45 45 H 1.08006 * 120.12792 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 1.4370 5 6 0.9620 2.1150 2.0031 6 6 1.1248 2.6925 3.4116 7 8 1.9709 3.8430 3.3585 8 6 3.2910 3.5748 2.8816 9 6 3.2152 3.0328 1.4519 10 16 2.2930 -1.4342 -0.0006 11 8 1.4113 -2.4062 -0.5455 12 8 3.5759 -1.1565 -0.5450 13 6 2.5538 -1.8866 1.6822 14 6 3.6999 -1.4675 2.3404 15 6 3.9155 -1.8112 3.6659 16 6 2.9969 -2.5832 4.3401 17 6 1.8331 -3.0190 3.6806 18 6 0.8822 -3.8120 4.3634 19 1 -0.1483 -3.8176 4.0400 20 6 1.2763 -4.5896 5.4581 21 7 2.5418 -4.8644 5.6435 22 14 -0.0047 -5.2351 6.6547 23 1 -0.9688 -6.1003 5.9286 24 1 0.6654 -6.0246 7.7190 25 1 -0.7292 -4.0931 7.2681 26 6 1.6219 -2.6591 2.3366 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6501 2.0043 -0.5894 31 1 3.1858 1.1177 -0.4342 32 1 2.8090 1.0006 2.0492 33 1 0.4773 2.8510 1.3615 34 1 0.3530 1.2121 2.0478 35 1 1.5725 1.9417 4.0628 36 1 0.1481 2.9774 3.8029 37 1 3.7671 2.8356 3.5258 38 1 3.8750 4.4951 2.8910 39 1 4.2178 2.7861 1.1021 40 1 2.7761 3.7872 0.7990 41 1 4.4284 -0.8654 1.8176 42 1 4.8099 -1.4759 4.1699 43 1 3.1689 -2.8532 5.3717 44 1 2.8150 -5.4031 6.4025 45 1 0.7317 -2.9877 1.8208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -128.978371 kcal Electronic energy + Delta-G solvation = -28819.499907 eV Core-core repulsion = 24927.457319 eV Total energy + Delta-G solvation = -3892.042588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43851 -39.45321 -38.35312 -37.70852 -36.92503 -35.67874 -34.24768 -31.96186 -31.92805 -31.59687 -29.20931 -27.35241 -26.35392 -24.41972 -23.82665 -23.32980 -22.81418 -21.02021 -20.23633 -19.44920 -18.44133 -17.79230 -17.38894 -17.11928 -16.87765 -16.81426 -16.51601 -15.96362 -15.73269 -15.33850 -15.24985 -15.07175 -14.74483 -14.40448 -14.30799 -13.96628 -13.72093 -13.44607 -13.37833 -13.26625 -13.09008 -13.06910 -12.97999 -12.87946 -12.67461 -12.58034 -12.44000 -12.23146 -12.17451 -11.90522 -11.57753 -11.47250 -11.28573 -11.16590 -11.11287 -10.58842 -9.89613 -9.78836 -9.55906 -8.73995 -6.45930 -0.54265 0.40490 0.83772 1.36345 1.45732 1.49058 2.04965 2.16697 2.55348 2.76107 3.01305 3.36239 3.50005 3.72178 3.83908 3.87065 4.05982 4.16225 4.27986 4.35731 4.41480 4.47270 4.52280 4.63231 4.69586 4.79057 4.81898 4.82402 4.86406 4.89076 4.92817 4.96585 5.04609 5.06225 5.11576 5.18798 5.20439 5.27798 5.39620 5.44957 5.55573 5.70109 5.87796 5.92653 6.09288 6.29694 6.51533 6.79197 6.83897 8.24019 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.004425 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.183439 B = 6325.956267 C = 7463.189968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.991 5.991 3 C 0.120 3.880 4 C -0.121 4.121 5 C -0.147 4.147 6 C 0.057 3.943 7 O -0.399 6.399 8 C 0.055 3.945 9 C -0.142 4.142 10 S 2.706 3.294 11 O -0.994 6.994 12 O -0.986 6.986 13 C -0.635 4.635 14 C -0.142 4.142 15 C -0.122 4.122 16 C -0.140 4.140 17 C 0.065 3.935 18 C -0.497 4.497 19 H 0.081 0.919 20 C 0.037 3.963 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.268 1.268 25 H -0.257 1.257 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.291 0.709 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 15.213 -5.086 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.830 5.830 3 C -0.004 4.004 4 C -0.142 4.142 5 C -0.184 4.184 6 C -0.020 4.020 7 O -0.318 6.318 8 C -0.022 4.022 9 C -0.180 4.180 10 S 2.800 3.200 11 O -0.984 6.984 12 O -0.976 6.976 13 C -0.724 4.724 14 C -0.163 4.163 15 C -0.141 4.141 16 C -0.160 4.160 17 C 0.062 3.938 18 C -0.526 4.526 19 H 0.099 0.901 20 C -0.179 4.179 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.184 1.184 24 H -0.192 1.192 25 H -0.181 1.181 26 C -0.164 4.164 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.078 14.799 -5.662 15.981 hybrid contribution -0.167 -1.193 1.526 1.944 sum -2.245 13.605 -4.136 14.397 Atomic orbital electron populations 1.21913 0.76982 1.04370 1.03432 1.57166 1.15891 1.20398 1.89517 1.21664 0.97815 0.84421 0.96545 1.21789 0.96963 0.98136 0.97284 1.22335 0.97275 1.01834 0.97001 1.22638 0.95059 0.87712 0.96567 1.87869 1.23952 1.33628 1.86393 1.22710 0.83823 1.01685 0.93957 1.22146 1.01061 0.96852 0.97982 1.01226 0.72342 0.72621 0.73833 1.93489 1.66810 1.60241 1.77868 1.93465 1.41388 1.84971 1.77776 1.30284 1.04195 1.13264 1.24619 1.20339 0.96425 1.04259 0.95294 1.21099 0.98971 0.98977 0.95083 1.21605 0.96191 0.98337 0.99827 1.18003 0.93335 0.91215 0.91219 1.19840 0.96701 1.23501 1.12605 0.90075 1.26765 0.98066 0.94346 0.98699 1.69821 1.18764 1.29091 1.27429 0.85230 0.78267 0.78915 0.77248 1.18443 1.19199 1.18138 1.20788 0.99080 1.02117 0.94431 0.90785 0.92161 0.87696 0.86655 0.89176 0.92230 0.89182 0.90496 0.94944 0.87862 0.94206 0.87088 0.89620 0.89245 0.85520 0.85936 0.87142 0.89791 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.69 9.43 127.77 1.21 2.89 16 2 N -0.99 -26.26 3.10 -539.12 -1.67 -27.93 16 3 C 0.12 2.52 5.21 86.38 0.45 2.97 16 4 C -0.12 -2.65 2.48 -10.68 -0.03 -2.68 16 5 C -0.15 -3.00 4.19 30.68 0.13 -2.87 16 6 C 0.06 1.30 6.84 72.01 0.49 1.79 16 7 O -0.40 -9.48 10.77 -148.98 -1.60 -11.08 16 8 C 0.05 1.08 6.84 72.01 0.49 1.57 16 9 C -0.14 -2.49 5.42 30.68 0.17 -2.33 16 10 S 2.71 99.65 5.65 -56.49 -0.32 99.34 16 11 O -0.99 -41.87 16.34 -128.00 -2.09 -43.96 16 12 O -0.99 -38.51 15.81 -128.00 -2.02 -40.54 16 13 C -0.63 -27.21 5.97 22.22 0.13 -27.08 16 14 C -0.14 -5.95 8.40 22.46 0.19 -5.76 16 15 C -0.12 -5.37 10.02 22.22 0.22 -5.15 16 16 C -0.14 -7.03 8.70 22.73 0.20 -6.83 16 17 C 0.07 3.43 5.57 -21.29 -0.12 3.31 16 18 C -0.50 -25.98 9.05 23.46 0.21 -25.77 16 19 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 20 C 0.04 1.79 5.14 85.26 0.44 2.23 16 21 N -0.83 -41.93 10.97 21.83 0.24 -41.69 16 22 Si 0.98 36.89 29.60 68.60 2.03 38.92 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 25 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 26 C -0.14 -6.91 9.26 22.73 0.21 -6.70 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.51 7.79 -2.39 -0.02 1.49 16 29 H 0.10 1.69 5.43 -2.38 -0.01 1.68 16 30 H 0.12 1.67 8.11 -2.38 -0.02 1.65 16 31 H 0.09 1.99 6.91 -2.39 -0.02 1.98 16 32 H 0.06 1.65 6.98 -2.39 -0.02 1.64 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.67 5.80 -2.39 -0.01 1.66 16 35 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.13 4.66 7.59 -2.91 -0.02 4.64 16 42 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 44 H 0.29 13.37 8.30 -92.70 -0.77 12.60 16 45 H 0.11 5.09 7.60 -2.91 -0.02 5.07 16 Total: -1.00 -66.03 367.88 -0.06 -66.09 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.99 Total: 31.25 kcal Atomic # 6 Polarization: -74.78 SS G_CDS: 4.39 Total: -70.39 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.43 Total: -69.63 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -5.72 Total: -95.58 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 16 Polarization: 99.65 SS G_CDS: -0.32 Total: 99.34 kcal Total: -66.03 -0.06 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.888 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds