Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47303 * 2 1 4 4 N 1.46496 * 109.47130 * 120.00315 * 2 1 3 5 5 S 1.65605 * 119.99894 * 265.00163 * 4 2 1 6 6 O 1.42099 * 106.39823 * 178.54008 * 5 4 2 7 7 O 1.42097 * 106.39966 * 311.45663 * 5 4 2 8 8 C 1.76198 * 107.21884 * 64.99656 * 5 4 2 9 9 C 1.38652 * 119.87639 * 269.72885 * 8 5 4 10 10 C 1.38611 * 120.50221 * 179.72826 * 9 8 5 11 11 C 1.37646 * 120.24610 * 0.54364 * 10 9 8 12 12 C 1.40695 * 119.74157 * 359.73450 * 11 10 9 13 13 C 1.41403 * 120.23837 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99504 * 155.25735 * 13 12 11 15 15 C 1.39943 * 119.99999 * 335.24827 * 13 12 11 16 16 N 1.30828 * 119.99947 * 342.24601 * 15 13 12 17 17 Si 1.86801 * 119.99858 * 162.24214 * 15 13 12 18 18 H 1.48499 * 109.47091 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47018 * 120.00309 * 17 15 13 20 20 H 1.48503 * 109.47093 * 240.00216 * 17 15 13 21 21 C 1.37596 * 119.87312 * 90.00415 * 8 5 4 22 22 C 1.53000 * 109.47000 * 239.99955 * 2 1 3 23 23 H 1.08998 * 109.48335 * 185.02296 * 22 2 1 24 24 C 1.53096 * 109.47996 * 65.00311 * 22 2 1 25 25 C 1.53178 * 109.16501 * 182.40690 * 24 22 2 26 26 C 1.53184 * 109.03306 * 56.98178 * 25 24 22 27 27 C 1.53090 * 109.16180 * 303.01884 * 26 25 24 28 28 O 1.42900 * 109.41955 * 57.60954 * 27 26 25 29 29 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47052 * 59.99743 * 1 2 3 31 31 H 1.08997 * 109.46916 * 300.00253 * 1 2 3 32 32 H 0.97006 * 119.99901 * 84.99353 * 4 2 1 33 33 H 1.08006 * 119.74810 * 0.02562 * 9 8 5 34 34 H 1.07999 * 119.88140 * 180.25713 * 10 9 8 35 35 H 1.07995 * 120.12621 * 179.75041 * 11 10 9 36 36 H 0.97006 * 119.99425 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.13065 * 359.97236 * 21 8 5 38 38 H 1.09003 * 109.51906 * 302.31401 * 24 22 2 39 39 H 1.08997 * 109.52184 * 62.43566 * 24 22 2 40 40 H 1.09002 * 109.54350 * 176.84243 * 25 24 22 41 41 H 1.08995 * 109.54199 * 297.11857 * 25 24 22 42 42 H 1.08995 * 109.52597 * 62.92785 * 26 25 24 43 43 H 1.08999 * 109.51791 * 183.12040 * 26 25 24 44 44 H 1.09002 * 109.48221 * 177.59696 * 27 26 25 45 45 H 1.09008 * 109.47930 * 297.61491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1771 2.5505 6 8 2.8124 -0.7699 3.5314 7 8 3.2436 1.2442 2.1156 8 6 0.9275 0.9147 3.1474 9 6 0.5559 2.1749 2.7046 10 6 -0.6122 2.7650 3.1613 11 6 -1.4113 2.1087 4.0698 12 6 -1.0411 0.8318 4.5305 13 6 -1.8545 0.1479 5.4633 14 1 -1.8211 -0.9301 5.5205 15 6 -2.7025 0.8678 6.3124 16 7 -2.5072 2.1477 6.5003 17 14 -4.1133 0.0013 7.1775 18 1 -4.1175 -1.4350 6.8006 19 1 -3.9441 0.1264 8.6475 20 1 -5.3993 0.6237 6.7724 21 6 0.1441 0.2401 4.0555 22 6 2.0400 -0.7213 -1.2492 23 1 3.1262 -0.8000 -1.2056 24 6 1.6351 0.0693 -2.4962 25 6 2.0965 -0.6894 -3.7444 26 6 1.4911 -2.0964 -3.7261 27 6 1.9015 -2.8032 -2.4316 28 8 1.4692 -2.0299 -1.3104 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 2.1109 -1.6563 1.1948 33 1 1.1789 2.6988 1.9948 34 1 -0.8942 3.7454 2.8066 35 1 -2.3189 2.5719 4.4275 36 1 -3.0953 2.6468 7.0886 37 1 0.4375 -0.7397 4.4021 38 1 0.5513 0.1834 -2.5192 39 1 2.1045 1.0527 -2.4723 40 1 1.7625 -0.1603 -4.6369 41 1 3.1842 -0.7605 -3.7465 42 1 0.4045 -2.0260 -3.7739 43 1 1.8585 -2.6621 -4.5822 44 1 1.4386 -3.7893 -2.3934 45 1 2.9861 -2.9095 -2.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -121.291171 kcal Electronic energy + Delta-G solvation = -28070.708502 eV Core-core repulsion = 24178.999256 eV Total energy + Delta-G solvation = -3891.709246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80593 -37.64454 -36.68815 -35.87208 -35.26488 -33.83376 -33.81371 -31.38555 -30.06560 -29.79707 -28.72022 -25.49327 -25.41568 -24.02120 -21.86012 -21.51414 -20.95402 -20.15781 -19.06369 -17.96966 -17.18535 -16.43945 -16.19535 -15.86989 -15.68478 -15.12935 -14.84300 -14.77234 -14.71119 -14.45672 -13.57673 -13.43732 -13.33477 -13.13772 -12.96643 -12.80656 -12.57510 -12.13590 -11.84179 -11.68016 -11.57441 -11.49862 -11.44638 -11.38154 -11.35152 -11.24809 -11.02445 -10.97506 -10.86149 -10.66177 -10.56787 -10.47339 -9.76880 -9.65615 -9.58503 -9.33358 -9.11091 -8.00606 -7.67493 -6.90688 -4.51316 1.06472 2.22247 2.64477 3.01691 3.05349 3.08374 3.51088 3.66584 3.84876 4.27829 4.45555 4.47506 4.58751 4.63270 4.75546 4.92841 4.98502 5.06220 5.21645 5.28083 5.36534 5.41486 5.48381 5.53772 5.63472 5.65991 5.76409 5.79430 5.86495 6.04488 6.06922 6.13312 6.19123 6.37784 6.64229 6.68288 6.78166 6.87388 7.05364 7.10254 7.22981 7.32284 7.40793 7.74154 7.82959 7.96347 8.42410 8.69089 8.73939 10.05047 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.003165 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.176718 B = 8844.275804 C = 9354.716485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.162 3.838 3 H 0.101 0.899 4 N -1.113 6.113 5 S 2.686 3.314 6 O -0.973 6.973 7 O -0.978 6.978 8 C -0.629 4.629 9 C -0.148 4.148 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.092 3.908 13 C -0.460 4.460 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.794 5.794 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.121 4.121 22 C 0.088 3.912 23 H 0.065 0.935 24 C -0.154 4.154 25 C -0.121 4.121 26 C -0.157 4.157 27 C 0.060 3.940 28 O -0.370 6.370 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.417 0.583 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.283 0.717 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -4.860 -17.311 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.055 3.945 3 H 0.119 0.881 4 N -0.871 5.871 5 S 2.782 3.218 6 O -0.963 6.963 7 O -0.968 6.968 8 C -0.721 4.721 9 C -0.169 4.169 10 C -0.140 4.140 11 C -0.138 4.138 12 C 0.089 3.911 13 C -0.489 4.489 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.419 5.419 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.143 4.143 22 C 0.028 3.972 23 H 0.083 0.917 24 C -0.192 4.192 25 C -0.159 4.159 26 C -0.194 4.194 27 C -0.017 4.017 28 O -0.289 6.289 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.251 0.749 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.831 -4.472 -16.671 17.923 hybrid contribution -1.227 -0.373 0.274 1.311 sum 3.604 -4.845 -16.397 17.474 Atomic orbital electron populations 1.22349 0.94284 1.03620 1.03063 1.20766 0.95384 0.95519 0.82861 0.88125 1.55594 1.84004 1.19831 1.27645 1.01711 0.74811 0.73117 0.72129 1.93539 1.82114 1.62446 1.58200 1.93504 1.65454 1.55934 1.81863 1.29705 1.21908 1.07066 1.13386 1.20043 0.98761 0.94251 1.03832 1.20793 0.95690 0.98550 0.98944 1.21619 0.99684 0.96535 0.95955 1.17675 0.90203 0.92145 0.91113 1.19643 1.18908 0.95099 1.15299 0.89924 1.25934 0.97755 0.94795 0.95851 1.69797 1.33813 1.08675 1.29612 0.86211 0.80412 0.80849 0.79023 1.18235 1.19880 1.19637 1.20747 0.94572 0.99811 0.99129 1.22366 0.97089 0.83539 0.94171 0.91740 1.22274 1.03087 0.99493 0.94350 1.21576 1.00520 0.95722 0.98074 1.22195 1.01988 0.96778 0.98479 1.22553 0.98849 0.94726 0.85552 1.87961 1.69539 1.25715 1.45647 0.91174 0.91947 0.90553 0.74857 0.87721 0.88470 0.85861 0.90645 0.87101 0.90131 0.90431 0.91439 0.91895 0.90959 0.91173 0.88940 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.08 37.16 0.34 -2.02 16 2 C 0.16 2.13 2.78 -67.93 -0.19 1.94 16 3 H 0.10 1.31 7.50 -51.93 -0.39 0.92 16 4 N -1.11 -16.52 5.46 -4.89 -0.03 -16.55 16 5 S 2.69 50.93 5.72 -107.50 -0.61 50.31 16 6 O -0.97 -20.98 17.27 -57.17 -0.99 -21.97 16 7 O -0.98 -19.91 16.60 -57.17 -0.95 -20.86 16 8 C -0.63 -13.55 5.05 -39.66 -0.20 -13.75 16 9 C -0.15 -3.11 8.61 -39.29 -0.34 -3.45 16 10 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 11 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 12 C 0.09 2.36 5.57 -106.82 -0.60 1.77 16 13 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 14 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 15 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.84 10.97 55.55 0.61 -19.23 16 17 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 22 C 0.09 0.96 2.52 -26.68 -0.07 0.89 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.15 -1.38 5.22 -26.59 -0.14 -1.51 16 25 C -0.12 -0.91 6.03 -26.54 -0.16 -1.07 16 26 C -0.16 -1.15 6.14 -26.59 -0.16 -1.31 16 27 C 0.06 0.51 6.84 37.20 0.25 0.77 16 28 O -0.37 -4.18 9.24 -35.23 -0.33 -4.51 16 29 H 0.07 0.97 7.56 -51.93 -0.39 0.58 16 30 H 0.06 0.71 6.52 -51.93 -0.34 0.37 16 31 H 0.08 1.21 6.18 -51.93 -0.32 0.89 16 32 H 0.42 5.58 8.58 -34.48 -0.30 5.28 16 33 H 0.10 1.98 7.59 -52.48 -0.40 1.58 16 34 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 36 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 37 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 38 H 0.08 0.73 6.47 -51.93 -0.34 0.40 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -30.38 369.76 -11.09 -41.47 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.55 Total: 10.39 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: -2.79 Total: -37.73 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.58 Total: -35.78 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -2.26 Total: -47.34 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 50.93 SS G_CDS: -0.61 Total: 50.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.38 -11.09 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.825 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds