Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47303 * 2 1 4 4 N 1.46496 * 109.47130 * 120.00315 * 2 1 3 5 5 S 1.65605 * 119.99894 * 265.00163 * 4 2 1 6 6 O 1.42099 * 106.39823 * 178.54008 * 5 4 2 7 7 O 1.42097 * 106.39966 * 311.45663 * 5 4 2 8 8 C 1.76198 * 107.21884 * 64.99656 * 5 4 2 9 9 C 1.38652 * 119.87639 * 269.72885 * 8 5 4 10 10 C 1.38611 * 120.50221 * 179.72826 * 9 8 5 11 11 C 1.37646 * 120.24610 * 0.54364 * 10 9 8 12 12 C 1.40695 * 119.74157 * 359.73450 * 11 10 9 13 13 C 1.41403 * 120.23837 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99504 * 155.25735 * 13 12 11 15 15 C 1.39943 * 119.99999 * 335.24827 * 13 12 11 16 16 N 1.30828 * 119.99947 * 342.24601 * 15 13 12 17 17 Si 1.86801 * 119.99858 * 162.24214 * 15 13 12 18 18 H 1.48499 * 109.47091 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47018 * 120.00309 * 17 15 13 20 20 H 1.48503 * 109.47093 * 240.00216 * 17 15 13 21 21 C 1.37596 * 119.87312 * 90.00415 * 8 5 4 22 22 C 1.53000 * 109.47000 * 239.99955 * 2 1 3 23 23 H 1.08998 * 109.48335 * 185.02296 * 22 2 1 24 24 C 1.53096 * 109.47996 * 65.00311 * 22 2 1 25 25 C 1.53178 * 109.16501 * 182.40690 * 24 22 2 26 26 C 1.53184 * 109.03306 * 56.98178 * 25 24 22 27 27 C 1.53090 * 109.16180 * 303.01884 * 26 25 24 28 28 O 1.42900 * 109.41955 * 57.60954 * 27 26 25 29 29 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47052 * 59.99743 * 1 2 3 31 31 H 1.08997 * 109.46916 * 300.00253 * 1 2 3 32 32 H 0.97006 * 119.99901 * 84.99353 * 4 2 1 33 33 H 1.08006 * 119.74810 * 0.02562 * 9 8 5 34 34 H 1.07999 * 119.88140 * 180.25713 * 10 9 8 35 35 H 1.07995 * 120.12621 * 179.75041 * 11 10 9 36 36 H 0.97006 * 119.99425 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.13065 * 359.97236 * 21 8 5 38 38 H 1.09003 * 109.51906 * 302.31401 * 24 22 2 39 39 H 1.08997 * 109.52184 * 62.43566 * 24 22 2 40 40 H 1.09002 * 109.54350 * 176.84243 * 25 24 22 41 41 H 1.08995 * 109.54199 * 297.11857 * 25 24 22 42 42 H 1.08995 * 109.52597 * 62.92785 * 26 25 24 43 43 H 1.08999 * 109.51791 * 183.12040 * 26 25 24 44 44 H 1.09002 * 109.48221 * 177.59696 * 27 26 25 45 45 H 1.09008 * 109.47930 * 297.61491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1771 2.5505 6 8 2.8124 -0.7699 3.5314 7 8 3.2436 1.2442 2.1156 8 6 0.9275 0.9147 3.1474 9 6 0.5559 2.1749 2.7046 10 6 -0.6122 2.7650 3.1613 11 6 -1.4113 2.1087 4.0698 12 6 -1.0411 0.8318 4.5305 13 6 -1.8545 0.1479 5.4633 14 1 -1.8211 -0.9301 5.5205 15 6 -2.7025 0.8678 6.3124 16 7 -2.5072 2.1477 6.5003 17 14 -4.1133 0.0013 7.1775 18 1 -4.1175 -1.4350 6.8006 19 1 -3.9441 0.1264 8.6475 20 1 -5.3993 0.6237 6.7724 21 6 0.1441 0.2401 4.0555 22 6 2.0400 -0.7213 -1.2492 23 1 3.1262 -0.8000 -1.2056 24 6 1.6351 0.0693 -2.4962 25 6 2.0965 -0.6894 -3.7444 26 6 1.4911 -2.0964 -3.7261 27 6 1.9015 -2.8032 -2.4316 28 8 1.4692 -2.0299 -1.3104 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 2.1109 -1.6563 1.1948 33 1 1.1789 2.6988 1.9948 34 1 -0.8942 3.7454 2.8066 35 1 -2.3189 2.5719 4.4275 36 1 -3.0953 2.6468 7.0886 37 1 0.4375 -0.7397 4.4021 38 1 0.5513 0.1834 -2.5192 39 1 2.1045 1.0527 -2.4723 40 1 1.7625 -0.1603 -4.6369 41 1 3.1842 -0.7605 -3.7465 42 1 0.4045 -2.0260 -3.7739 43 1 1.8585 -2.6621 -4.5822 44 1 1.4386 -3.7893 -2.3934 45 1 2.9861 -2.9095 -2.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619495361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -140.951021 kcal Electronic energy + Delta-G solvation = -28071.561017 eV Core-core repulsion = 24178.999256 eV Total energy + Delta-G solvation = -3892.561761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59556 -39.44312 -38.29496 -36.97784 -36.90332 -35.65150 -34.49879 -32.31917 -31.89900 -31.58221 -29.72397 -27.32885 -26.25615 -24.73686 -23.63582 -22.81403 -22.36829 -20.93181 -20.56282 -19.63874 -18.60524 -17.77829 -17.49765 -17.03712 -16.80092 -16.67278 -16.45737 -16.07194 -15.44543 -15.40030 -15.23407 -15.05344 -14.40985 -14.28738 -14.25778 -13.84401 -13.75519 -13.52247 -13.30047 -13.19870 -13.11468 -13.06209 -13.00019 -12.81937 -12.67200 -12.57880 -12.31124 -12.18448 -12.02248 -11.78795 -11.53407 -11.51619 -11.38362 -11.20322 -11.12864 -10.44021 -10.28634 -9.80345 -9.52530 -8.72228 -6.43698 -0.48869 0.43353 0.86449 1.37317 1.44767 1.52515 2.11184 2.18754 2.55932 2.79276 2.84279 3.45251 3.53931 3.69745 3.91501 4.00376 4.04836 4.16028 4.21843 4.32895 4.36363 4.43799 4.47906 4.57721 4.67907 4.77841 4.86917 4.90666 4.92637 4.96973 5.01381 5.08319 5.12169 5.17084 5.21761 5.23828 5.30518 5.43238 5.45207 5.55509 5.59093 5.90933 5.95756 6.11510 6.14053 6.36327 6.54614 6.81505 6.86759 8.26188 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.003165 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.176718 B = 8844.275804 C = 9354.716485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.154 3.846 3 H 0.107 0.893 4 N -1.099 6.099 5 S 2.715 3.285 6 O -1.000 7.000 7 O -0.985 6.985 8 C -0.633 4.633 9 C -0.140 4.140 10 C -0.121 4.121 11 C -0.138 4.138 12 C 0.064 3.936 13 C -0.500 4.500 14 H 0.077 0.923 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.259 1.259 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.143 4.143 22 C 0.091 3.909 23 H 0.069 0.931 24 C -0.153 4.153 25 C -0.120 4.120 26 C -0.153 4.153 27 C 0.052 3.948 28 O -0.390 6.390 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.426 0.574 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -4.832 -19.379 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.047 3.953 3 H 0.124 0.876 4 N -0.860 5.860 5 S 2.808 3.192 6 O -0.990 6.990 7 O -0.975 6.975 8 C -0.722 4.722 9 C -0.161 4.161 10 C -0.140 4.140 11 C -0.158 4.158 12 C 0.061 3.939 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.179 4.179 16 N -0.451 5.451 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.164 4.164 22 C 0.031 3.969 23 H 0.087 0.913 24 C -0.192 4.192 25 C -0.158 4.158 26 C -0.191 4.191 27 C -0.024 4.024 28 O -0.310 6.310 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.262 0.738 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.125 -4.430 -18.738 19.925 hybrid contribution -1.214 -0.378 0.769 1.485 sum 3.911 -4.808 -17.970 19.008 Atomic orbital electron populations 1.22289 0.94622 1.03105 1.02832 1.21043 0.95131 0.96131 0.82996 0.87560 1.55272 1.83713 1.20174 1.26809 1.00865 0.73603 0.72571 0.72164 1.93498 1.82333 1.63015 1.60143 1.93490 1.65233 1.56717 1.82075 1.30145 1.22377 1.07317 1.12380 1.20426 0.98464 0.93911 1.03294 1.21126 0.95420 0.99577 0.97853 1.21621 1.00148 0.96686 0.97352 1.18006 0.91042 0.93055 0.91802 1.19877 1.20986 0.95145 1.16869 0.90459 1.26746 0.99617 0.95422 0.96089 1.69832 1.34891 1.09945 1.30397 0.85137 0.77139 0.79484 0.77852 1.18243 1.19200 1.18490 1.20783 0.94991 1.00100 1.00539 1.22308 0.97140 0.83749 0.93657 0.91301 1.22288 1.03053 0.99855 0.93971 1.21593 1.00881 0.95608 0.97685 1.22172 1.01631 0.96908 0.98394 1.22757 0.99437 0.94875 0.85319 1.87928 1.69976 1.25996 1.47093 0.91861 0.89683 0.93196 0.73785 0.84911 0.85481 0.87054 0.89809 0.87685 0.90382 0.89498 0.90239 0.91332 0.91590 0.89450 0.88193 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 9.08 71.98 0.65 -3.76 16 2 C 0.15 3.78 2.78 44.99 0.13 3.91 16 3 H 0.11 2.52 7.50 -2.39 -0.02 2.50 16 4 N -1.10 -31.48 5.46 -169.40 -0.93 -32.41 16 5 S 2.71 101.16 5.72 -56.49 -0.32 100.84 16 6 O -1.00 -43.20 17.27 -128.00 -2.21 -45.41 16 7 O -0.99 -38.47 16.60 -128.00 -2.12 -40.59 16 8 C -0.63 -27.35 5.05 22.22 0.11 -27.23 16 9 C -0.14 -5.77 8.61 22.46 0.19 -5.58 16 10 C -0.12 -5.24 10.02 22.22 0.22 -5.02 16 11 C -0.14 -6.97 8.70 22.73 0.20 -6.77 16 12 C 0.06 3.42 5.57 -21.29 -0.12 3.30 16 13 C -0.50 -26.78 9.05 23.46 0.21 -26.56 16 14 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 15 C 0.04 1.81 5.14 85.26 0.44 2.25 16 16 N -0.82 -42.21 10.97 21.83 0.24 -41.97 16 17 Si 0.98 37.71 29.59 68.60 2.03 39.74 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 21 C -0.14 -7.09 9.26 22.73 0.21 -6.88 16 22 C 0.09 1.80 2.52 30.63 0.08 1.87 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 C -0.15 -2.34 5.22 30.69 0.16 -2.18 16 25 C -0.12 -1.44 6.03 30.72 0.19 -1.26 16 26 C -0.15 -1.85 6.14 30.69 0.19 -1.66 16 27 C 0.05 0.78 6.84 72.01 0.49 1.28 16 28 O -0.39 -8.18 9.24 -148.98 -1.38 -9.55 16 29 H 0.06 1.72 7.56 -2.39 -0.02 1.70 16 30 H 0.08 1.79 6.52 -2.38 -0.02 1.77 16 31 H 0.05 1.56 6.18 -2.39 -0.01 1.55 16 32 H 0.43 11.00 8.58 -96.73 -0.83 10.17 16 33 H 0.13 4.69 7.59 -2.91 -0.02 4.67 16 34 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.11 5.79 6.18 -2.91 -0.02 5.78 16 36 H 0.29 13.35 8.30 -92.70 -0.77 12.59 16 37 H 0.11 5.16 7.60 -2.91 -0.02 5.14 16 38 H 0.08 1.23 6.47 -2.39 -0.02 1.21 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -66.25 369.76 -1.16 -67.42 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.18 Total: 36.25 kcal Atomic # 6 Polarization: -77.65 SS G_CDS: 3.35 Total: -74.30 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -0.69 Total: -74.38 kcal Atomic # 8 Polarization: -89.85 SS G_CDS: -5.71 Total: -95.56 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 16 Polarization: 101.16 SS G_CDS: -0.32 Total: 100.84 kcal Total: -66.25 -1.16 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.535 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds