Wall clock time and date at job start Sat Apr 11 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 120.00237 * 2 1 4 4 C 1.53003 * 109.46621 * 274.99745 * 3 2 1 5 5 H 1.08991 * 109.48146 * 304.97206 * 4 3 2 6 6 C 1.53100 * 109.47554 * 184.94006 * 4 3 2 7 7 C 1.53175 * 109.15803 * 182.40929 * 6 4 3 8 8 C 1.53173 * 109.04146 * 56.98127 * 7 6 4 9 9 C 1.53096 * 109.16288 * 303.02135 * 8 7 6 10 10 O 1.42898 * 109.41829 * 57.60354 * 9 8 7 11 11 S 1.65600 * 120.00239 * 179.97438 * 2 1 3 12 12 O 1.42104 * 106.39678 * 343.57158 * 11 2 1 13 13 O 1.42099 * 106.40457 * 210.64912 * 11 2 1 14 14 C 1.76202 * 107.21515 * 97.10486 * 11 2 1 15 15 C 1.37641 * 120.12147 * 112.85767 * 14 11 2 16 16 C 1.38621 * 120.24581 * 179.97438 * 15 14 11 17 17 C 1.38662 * 120.49889 * 359.97438 * 16 15 14 18 18 C 1.37590 * 120.24627 * 0.02562 * 17 16 15 19 19 C 1.40692 * 120.12947 * 292.83393 * 14 11 2 20 20 C 1.41395 * 120.24699 * 0.04464 * 19 14 11 21 21 H 1.08007 * 119.99797 * 323.76708 * 20 19 14 22 22 C 1.39940 * 120.00226 * 143.77182 * 20 19 14 23 23 N 1.30829 * 119.99762 * 2.96768 * 22 20 19 24 24 Si 1.86799 * 120.00131 * 182.96924 * 22 20 19 25 25 H 1.48495 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47117 * 119.99650 * 24 22 20 27 27 H 1.48502 * 109.47241 * 239.99785 * 24 22 20 28 28 H 1.09003 * 109.47538 * 265.64418 * 1 2 3 29 29 H 1.09006 * 109.47173 * 25.64447 * 1 2 3 30 30 H 1.09003 * 109.47265 * 145.64213 * 1 2 3 31 31 H 1.08999 * 109.47043 * 34.99053 * 3 2 1 32 32 H 1.08996 * 109.47631 * 154.99615 * 3 2 1 33 33 H 1.08999 * 109.52199 * 302.30810 * 6 4 3 34 34 H 1.08993 * 109.52079 * 62.50262 * 6 4 3 35 35 H 1.09006 * 109.54711 * 297.11210 * 7 6 4 36 36 H 1.09000 * 109.54258 * 176.85094 * 7 6 4 37 37 H 1.08996 * 109.52579 * 183.11195 * 8 7 6 38 38 H 1.09004 * 109.52029 * 62.92406 * 8 7 6 39 39 H 1.09008 * 109.47594 * 297.62114 * 9 8 7 40 40 H 1.08998 * 109.47848 * 177.59168 * 9 8 7 41 41 H 1.07994 * 119.87952 * 0.02562 * 15 14 11 42 42 H 1.07995 * 119.74869 * 179.97438 * 16 15 14 43 43 H 1.07995 * 119.86998 * 180.27770 * 17 16 15 44 44 H 1.08009 * 120.12137 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99411 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7731 -1.4371 5 1 2.8123 1.0012 -2.0474 6 6 3.2138 3.0328 -1.4499 7 6 3.3057 3.5656 -2.8831 8 6 1.8918 3.8304 -3.4094 9 6 1.0727 2.5400 -3.3208 10 8 1.0531 2.0818 -1.9674 11 16 2.2930 -1.4341 0.0006 12 8 1.3612 -2.4352 0.3866 13 8 3.5093 -1.1949 0.6954 14 6 2.7340 -1.7824 -1.6694 15 6 4.0559 -1.7654 -2.0526 16 6 4.4058 -2.0395 -3.3656 17 6 3.4311 -2.3340 -4.3068 18 6 2.1036 -2.3566 -3.9461 19 6 1.7365 -2.0793 -2.6160 20 6 0.3753 -2.0992 -2.2339 21 1 0.0937 -2.4658 -1.2578 22 6 -0.6071 -1.6439 -3.1205 23 7 -0.2724 -1.2544 -4.3238 24 14 -2.3962 -1.5923 -2.5859 25 1 -2.5095 -2.0817 -1.1885 26 1 -2.8958 -0.1960 -2.6629 27 1 -3.2055 -2.4577 -3.4812 28 1 -0.3634 -0.0781 1.0247 29 1 -0.3634 0.9265 -0.4448 30 1 -0.3634 -0.8484 -0.5800 31 1 1.6501 2.0044 0.5893 32 1 3.1857 1.1178 0.4343 33 1 2.7663 3.7911 -0.8074 34 1 4.2123 2.7894 -1.0870 35 1 3.7980 2.8271 -3.5159 36 1 3.8774 4.4936 -2.8911 37 1 1.9449 4.1575 -4.4478 38 1 1.4177 4.6049 -2.8064 39 1 1.5249 1.7782 -3.9560 40 1 0.0531 2.7331 -3.6541 41 1 4.8234 -1.5386 -1.3275 42 1 5.4454 -2.0236 -3.6576 43 1 3.7155 -2.5504 -5.3260 44 1 1.3460 -2.5866 -4.6808 45 1 -0.9533 -0.9385 -4.9382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:33 Heat of formation + Delta-G solvation = -107.576842 kcal Electronic energy + Delta-G solvation = -30295.843652 eV Core-core repulsion = 26404.729104 eV Total energy + Delta-G solvation = -3891.114548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.11100 -37.60813 -36.34645 -35.57492 -34.85930 -33.81368 -33.30872 -31.31784 -30.20946 -29.55089 -27.40159 -25.55110 -24.66202 -23.68161 -21.94611 -21.44094 -21.10947 -19.98030 -18.06224 -17.65184 -17.03367 -16.16719 -15.83843 -15.54508 -15.39103 -15.32836 -14.48608 -14.33792 -14.26511 -13.91740 -13.41138 -13.24348 -13.10406 -12.76340 -12.74415 -12.41250 -12.26917 -11.99133 -11.98622 -11.74600 -11.30846 -11.27315 -11.18537 -11.13837 -11.08294 -10.98768 -10.79264 -10.71017 -10.62544 -10.44968 -10.32871 -10.00148 -9.88925 -9.48334 -9.13297 -9.01638 -8.27205 -8.00263 -7.50073 -6.93568 -4.75814 1.52332 2.32135 2.72833 2.99658 3.05906 3.10036 3.81101 3.86831 4.16164 4.44946 4.73780 4.93733 4.98832 5.03751 5.16536 5.29228 5.36479 5.50629 5.53091 5.59182 5.77384 5.84522 5.90987 5.99659 6.04544 6.05989 6.07883 6.13198 6.22121 6.22736 6.27944 6.34654 6.37471 6.51965 6.70761 6.74118 6.82445 7.00303 7.06455 7.30538 7.36188 7.50733 7.69797 7.75367 7.79843 7.96391 8.39189 8.58682 8.66881 9.97905 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.007366 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.525397 B = 3800.544902 C = 4354.152692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.987 5.987 3 C 0.131 3.869 4 C 0.068 3.932 5 H 0.071 0.929 6 C -0.149 4.149 7 C -0.120 4.120 8 C -0.154 4.154 9 C 0.064 3.936 10 O -0.363 6.363 11 S 2.702 3.298 12 O -0.971 6.971 13 O -0.998 6.998 14 C -0.767 4.767 15 C -0.010 4.010 16 C -0.243 4.243 17 C -0.081 4.081 18 C -0.151 4.151 19 C 0.196 3.804 20 C -0.480 4.480 21 H 0.117 0.883 22 C 0.086 3.914 23 N -0.787 5.787 24 Si 0.899 3.101 25 H -0.249 1.249 26 H -0.266 1.266 27 H -0.271 1.271 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 9.152 0.833 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.822 5.822 3 C 0.004 3.996 4 C 0.009 3.991 5 H 0.089 0.911 6 C -0.188 4.188 7 C -0.158 4.158 8 C -0.192 4.192 9 C -0.013 4.013 10 O -0.281 6.281 11 S 2.800 3.200 12 O -0.961 6.961 13 O -0.989 6.989 14 C -0.862 4.862 15 C -0.030 4.030 16 C -0.263 4.263 17 C -0.100 4.100 18 C -0.170 4.170 19 C 0.191 3.809 20 C -0.509 4.509 21 H 0.135 0.865 22 C -0.134 4.134 23 N -0.411 5.411 24 Si 0.723 3.277 25 H -0.172 1.172 26 H -0.191 1.191 27 H -0.197 1.197 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.037 8.743 1.535 8.937 hybrid contribution -0.420 0.407 -1.224 1.356 sum 0.617 9.149 0.311 9.175 Atomic orbital electron populations 1.21831 0.78323 1.05313 1.00406 1.57151 1.15188 1.20085 1.89741 1.21320 0.97663 0.86161 0.94463 1.22712 0.84798 0.95443 0.96174 0.91121 1.22172 1.00681 0.98531 0.97392 1.21545 0.96799 1.00946 0.96484 1.22196 0.96541 0.99262 1.01192 1.22452 1.00200 0.94056 0.84557 1.87913 1.27592 1.85678 1.26960 1.01107 0.71973 0.72196 0.74757 1.93470 1.63155 1.56375 1.83132 1.93425 1.46453 1.85698 1.73312 1.30029 1.00968 1.31501 1.23725 1.20248 0.93655 0.93565 0.95489 1.20521 0.97389 1.14337 0.94073 1.20953 0.94147 0.97726 0.97153 1.21679 0.94372 1.03138 0.97845 1.17029 0.91169 0.82194 0.90472 1.20464 0.90749 1.36312 1.03394 0.86549 1.25891 1.01454 0.92242 0.93803 1.69756 1.36082 1.29908 1.05389 0.86377 0.81007 0.79298 0.81066 1.17183 1.19058 1.19653 0.94449 0.90723 0.88710 0.90069 0.88392 0.91264 0.90893 0.91689 0.92009 0.91530 0.91628 0.92585 0.89703 0.87523 0.88808 0.88927 0.85326 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 9.78 59.84 0.59 2.19 16 2 N -0.99 -19.01 3.17 -121.75 -0.39 -19.39 16 3 C 0.13 2.12 5.39 -4.04 -0.02 2.10 16 4 C 0.07 1.13 2.89 -26.68 -0.08 1.05 16 5 H 0.07 1.36 7.74 -51.93 -0.40 0.96 16 6 C -0.15 -1.95 5.42 -26.59 -0.14 -2.10 16 7 C -0.12 -1.49 6.03 -26.55 -0.16 -1.65 16 8 C -0.15 -1.94 6.14 -26.59 -0.16 -2.10 16 9 C 0.06 1.02 6.84 37.21 0.25 1.27 16 10 O -0.36 -6.34 8.85 -35.23 -0.31 -6.65 16 11 S 2.70 60.17 5.11 -107.50 -0.55 59.62 16 12 O -0.97 -23.83 14.61 -57.17 -0.84 -24.67 16 13 O -1.00 -22.57 15.69 -57.17 -0.90 -23.47 16 14 C -0.77 -18.07 5.58 -38.87 -0.22 -18.28 16 15 C -0.01 -0.21 9.54 -39.66 -0.38 -0.59 16 16 C -0.24 -5.18 10.05 -39.28 -0.39 -5.57 16 17 C -0.08 -1.77 10.02 -39.66 -0.40 -2.17 16 18 C -0.15 -3.64 8.65 -38.88 -0.34 -3.98 16 19 C 0.20 4.87 5.52 -106.83 -0.59 4.28 16 20 C -0.48 -11.79 6.15 -37.74 -0.23 -12.02 16 21 H 0.12 2.94 4.51 -52.48 -0.24 2.70 16 22 C 0.09 1.97 5.35 -17.34 -0.09 1.87 16 23 N -0.79 -18.14 10.75 55.55 0.60 -17.54 16 24 Si 0.90 17.66 28.32 -169.99 -4.81 12.85 16 25 H -0.25 -4.88 7.11 56.52 0.40 -4.47 16 26 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.30 6.76 -51.93 -0.35 0.95 16 30 H 0.09 1.97 2.88 -51.93 -0.15 1.82 16 31 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.10 1.51 7.02 -51.93 -0.36 1.15 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.11 2.19 7.32 -52.49 -0.38 1.81 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.13 3.17 6.32 -52.48 -0.33 2.84 16 45 H 0.28 5.95 8.30 -40.82 -0.34 5.61 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -27.89 359.52 -10.57 -38.45 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.43 Total: 11.09 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: -2.36 Total: -35.70 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.21 Total: -36.94 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -2.04 Total: -54.79 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.81 Total: 12.85 kcal Atomic # 16 Polarization: 60.17 SS G_CDS: -0.55 Total: 59.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.89 -10.57 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.122 kcal (2) G-P(sol) polarization free energy of solvation -27.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds