Wall clock time and date at job start Sat Apr 11 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 120.00237 * 2 1 4 4 C 1.53003 * 109.46621 * 274.99745 * 3 2 1 5 5 H 1.08991 * 109.48146 * 304.97206 * 4 3 2 6 6 C 1.53100 * 109.47554 * 184.94006 * 4 3 2 7 7 C 1.53175 * 109.15803 * 182.40929 * 6 4 3 8 8 C 1.53173 * 109.04146 * 56.98127 * 7 6 4 9 9 C 1.53096 * 109.16288 * 303.02135 * 8 7 6 10 10 O 1.42898 * 109.41829 * 57.60354 * 9 8 7 11 11 S 1.65600 * 120.00239 * 179.97438 * 2 1 3 12 12 O 1.42104 * 106.39678 * 343.57158 * 11 2 1 13 13 O 1.42099 * 106.40457 * 210.64912 * 11 2 1 14 14 C 1.76202 * 107.21515 * 97.10486 * 11 2 1 15 15 C 1.37641 * 120.12147 * 112.85767 * 14 11 2 16 16 C 1.38621 * 120.24581 * 179.97438 * 15 14 11 17 17 C 1.38662 * 120.49889 * 359.97438 * 16 15 14 18 18 C 1.37590 * 120.24627 * 0.02562 * 17 16 15 19 19 C 1.40692 * 120.12947 * 292.83393 * 14 11 2 20 20 C 1.41395 * 120.24699 * 0.04464 * 19 14 11 21 21 H 1.08007 * 119.99797 * 323.76708 * 20 19 14 22 22 C 1.39940 * 120.00226 * 143.77182 * 20 19 14 23 23 N 1.30829 * 119.99762 * 2.96768 * 22 20 19 24 24 Si 1.86799 * 120.00131 * 182.96924 * 22 20 19 25 25 H 1.48495 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47117 * 119.99650 * 24 22 20 27 27 H 1.48502 * 109.47241 * 239.99785 * 24 22 20 28 28 H 1.09003 * 109.47538 * 265.64418 * 1 2 3 29 29 H 1.09006 * 109.47173 * 25.64447 * 1 2 3 30 30 H 1.09003 * 109.47265 * 145.64213 * 1 2 3 31 31 H 1.08999 * 109.47043 * 34.99053 * 3 2 1 32 32 H 1.08996 * 109.47631 * 154.99615 * 3 2 1 33 33 H 1.08999 * 109.52199 * 302.30810 * 6 4 3 34 34 H 1.08993 * 109.52079 * 62.50262 * 6 4 3 35 35 H 1.09006 * 109.54711 * 297.11210 * 7 6 4 36 36 H 1.09000 * 109.54258 * 176.85094 * 7 6 4 37 37 H 1.08996 * 109.52579 * 183.11195 * 8 7 6 38 38 H 1.09004 * 109.52029 * 62.92406 * 8 7 6 39 39 H 1.09008 * 109.47594 * 297.62114 * 9 8 7 40 40 H 1.08998 * 109.47848 * 177.59168 * 9 8 7 41 41 H 1.07994 * 119.87952 * 0.02562 * 15 14 11 42 42 H 1.07995 * 119.74869 * 179.97438 * 16 15 14 43 43 H 1.07995 * 119.86998 * 180.27770 * 17 16 15 44 44 H 1.08009 * 120.12137 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99411 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7731 -1.4371 5 1 2.8123 1.0012 -2.0474 6 6 3.2138 3.0328 -1.4499 7 6 3.3057 3.5656 -2.8831 8 6 1.8918 3.8304 -3.4094 9 6 1.0727 2.5400 -3.3208 10 8 1.0531 2.0818 -1.9674 11 16 2.2930 -1.4341 0.0006 12 8 1.3612 -2.4352 0.3866 13 8 3.5093 -1.1949 0.6954 14 6 2.7340 -1.7824 -1.6694 15 6 4.0559 -1.7654 -2.0526 16 6 4.4058 -2.0395 -3.3656 17 6 3.4311 -2.3340 -4.3068 18 6 2.1036 -2.3566 -3.9461 19 6 1.7365 -2.0793 -2.6160 20 6 0.3753 -2.0992 -2.2339 21 1 0.0937 -2.4658 -1.2578 22 6 -0.6071 -1.6439 -3.1205 23 7 -0.2724 -1.2544 -4.3238 24 14 -2.3962 -1.5923 -2.5859 25 1 -2.5095 -2.0817 -1.1885 26 1 -2.8958 -0.1960 -2.6629 27 1 -3.2055 -2.4577 -3.4812 28 1 -0.3634 -0.0781 1.0247 29 1 -0.3634 0.9265 -0.4448 30 1 -0.3634 -0.8484 -0.5800 31 1 1.6501 2.0044 0.5893 32 1 3.1857 1.1178 0.4343 33 1 2.7663 3.7911 -0.8074 34 1 4.2123 2.7894 -1.0870 35 1 3.7980 2.8271 -3.5159 36 1 3.8774 4.4936 -2.8911 37 1 1.9449 4.1575 -4.4478 38 1 1.4177 4.6049 -2.8064 39 1 1.5249 1.7782 -3.9560 40 1 0.0531 2.7331 -3.6541 41 1 4.8234 -1.5386 -1.3275 42 1 5.4454 -2.0236 -3.6576 43 1 3.7155 -2.5504 -5.3260 44 1 1.3460 -2.5866 -4.6808 45 1 -0.9533 -0.9385 -4.9382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:33 Heat of formation + Delta-G solvation = -123.976098 kcal Electronic energy + Delta-G solvation = -30296.554777 eV Core-core repulsion = 26404.729104 eV Total energy + Delta-G solvation = -3891.825673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33824 -39.36966 -38.14943 -37.01709 -36.67463 -35.56709 -34.43764 -32.57270 -31.98254 -31.32688 -28.71936 -27.28330 -26.07444 -24.87674 -23.52984 -22.93067 -22.84695 -21.09633 -19.76200 -19.42068 -18.66902 -17.79774 -17.28896 -17.01769 -16.91049 -16.81331 -16.04590 -15.76196 -15.51788 -15.29864 -15.01172 -14.92804 -14.57111 -14.44893 -14.03600 -13.88395 -13.73377 -13.50133 -13.37913 -13.23751 -12.99299 -12.96633 -12.90298 -12.80681 -12.53464 -12.47025 -12.17192 -12.09289 -11.99342 -11.89138 -11.68723 -11.62116 -11.26771 -11.16431 -10.89803 -10.30380 -9.83869 -9.66287 -9.30036 -8.66897 -6.57910 -0.18840 0.53818 0.99571 1.37719 1.45860 1.51503 2.18561 2.25446 2.69179 2.91036 2.99073 3.47368 3.71106 3.81907 3.91648 3.98710 4.01587 4.18272 4.31300 4.35838 4.39956 4.50904 4.58197 4.64118 4.71372 4.73661 4.78254 4.87469 4.96798 5.02124 5.04484 5.08440 5.13750 5.17550 5.21565 5.25924 5.28421 5.32446 5.42953 5.57127 5.70396 5.85191 5.95075 6.01011 6.17403 6.43119 6.56414 6.79277 6.86787 8.26612 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.007366 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.525397 B = 3800.544902 C = 4354.152692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.984 5.984 3 C 0.123 3.877 4 C 0.068 3.932 5 H 0.033 0.967 6 C -0.144 4.144 7 C -0.121 4.121 8 C -0.145 4.145 9 C 0.062 3.938 10 O -0.379 6.379 11 S 2.713 3.287 12 O -0.999 6.999 13 O -1.004 7.004 14 C -0.781 4.781 15 C -0.020 4.020 16 C -0.242 4.242 17 C -0.080 4.080 18 C -0.178 4.178 19 C 0.172 3.828 20 C -0.499 4.499 21 H 0.104 0.896 22 C 0.059 3.941 23 N -0.805 5.805 24 Si 0.946 3.054 25 H -0.251 1.251 26 H -0.252 1.252 27 H -0.265 1.265 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.021 0.979 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 11.362 1.205 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.820 5.820 3 C -0.002 4.002 4 C 0.009 3.991 5 H 0.051 0.949 6 C -0.182 4.182 7 C -0.158 4.158 8 C -0.182 4.182 9 C -0.014 4.014 10 O -0.298 6.298 11 S 2.810 3.190 12 O -0.990 6.990 13 O -0.995 6.995 14 C -0.875 4.875 15 C -0.040 4.040 16 C -0.262 4.262 17 C -0.098 4.098 18 C -0.197 4.197 19 C 0.168 3.832 20 C -0.528 4.528 21 H 0.121 0.879 22 C -0.159 4.159 23 N -0.430 5.430 24 Si 0.766 3.234 25 H -0.175 1.175 26 H -0.176 1.176 27 H -0.190 1.190 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.432 10.949 1.887 11.203 hybrid contribution -0.467 -0.275 -1.369 1.472 sum 0.965 10.674 0.518 10.730 Atomic orbital electron populations 1.21891 0.77915 1.04896 1.01549 1.56948 1.15444 1.20180 1.89460 1.21645 0.98251 0.85321 0.95010 1.22676 0.84839 0.96250 0.95350 0.94887 1.22154 1.00612 0.97146 0.98330 1.21576 0.96843 1.01697 0.95696 1.22125 0.96098 0.97504 1.02505 1.22482 1.00832 0.94763 0.83370 1.87865 1.28398 1.86011 1.27521 1.00652 0.71665 0.72515 0.74170 1.93426 1.63847 1.58209 1.83472 1.93402 1.46839 1.85985 1.73280 1.30296 1.01469 1.31535 1.24223 1.20555 0.93590 0.93399 0.96468 1.20898 0.98898 1.12906 0.93529 1.21271 0.93416 0.96465 0.98695 1.21683 0.95277 1.05077 0.97710 1.17290 0.91845 0.82900 0.91164 1.20439 0.91323 1.37667 1.03328 0.87876 1.26454 1.04251 0.91550 0.93647 1.69787 1.37308 1.29906 1.05978 0.85689 0.77112 0.80030 0.80558 1.17467 1.17571 1.19005 0.92199 0.89626 0.90897 0.87025 0.87601 0.89237 0.89743 0.93418 0.89226 0.90125 0.90096 0.96068 0.89344 0.86051 0.85560 0.86238 0.86607 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.02 9.78 127.77 1.25 4.27 16 2 N -0.98 -37.46 3.17 -539.11 -1.71 -39.17 16 3 C 0.12 3.81 5.39 86.38 0.47 4.28 16 4 C 0.07 2.20 2.89 30.63 0.09 2.29 16 5 H 0.03 1.30 7.74 -2.39 -0.02 1.29 16 6 C -0.14 -3.41 5.42 30.69 0.17 -3.24 16 7 C -0.12 -2.72 6.03 30.71 0.19 -2.54 16 8 C -0.14 -3.33 6.14 30.68 0.19 -3.15 16 9 C 0.06 1.96 6.84 72.01 0.49 2.45 16 10 O -0.38 -13.00 8.85 -148.98 -1.32 -14.32 16 11 S 2.71 121.96 5.11 -56.49 -0.29 121.67 16 12 O -1.00 -50.19 14.61 -128.00 -1.87 -52.06 16 13 O -1.00 -45.08 15.69 -128.00 -2.01 -47.09 16 14 C -0.78 -37.54 5.58 22.73 0.13 -37.41 16 15 C -0.02 -0.90 9.54 22.22 0.21 -0.69 16 16 C -0.24 -10.10 10.05 22.46 0.23 -9.87 16 17 C -0.08 -3.49 10.02 22.22 0.22 -3.27 16 18 C -0.18 -8.84 8.65 22.73 0.20 -8.64 16 19 C 0.17 8.85 5.52 -21.29 -0.12 8.74 16 20 C -0.50 -25.33 6.15 23.46 0.14 -25.19 16 21 H 0.10 5.43 4.51 -2.91 -0.01 5.42 16 22 C 0.06 2.76 5.35 85.25 0.46 3.22 16 23 N -0.81 -38.12 10.75 21.83 0.23 -37.89 16 24 Si 0.95 36.30 28.32 68.60 1.94 38.24 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 26 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 27 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 2.91 6.76 -2.38 -0.02 2.89 16 30 H 0.07 3.06 2.88 -2.39 -0.01 3.05 16 31 H 0.11 2.78 8.11 -2.39 -0.02 2.76 16 32 H 0.11 3.09 7.02 -2.39 -0.02 3.08 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.12 4.91 7.32 -2.91 -0.02 4.89 16 42 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.12 5.95 6.32 -2.91 -0.02 5.93 16 45 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 Total: -1.00 -61.50 359.52 0.29 -61.22 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 1.00 Total: 38.15 kcal Atomic # 6 Polarization: -73.06 SS G_CDS: 4.30 Total: -68.76 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -1.47 Total: -77.05 kcal Atomic # 8 Polarization: -108.27 SS G_CDS: -5.20 Total: -113.46 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 1.94 Total: 38.24 kcal Atomic # 16 Polarization: 121.96 SS G_CDS: -0.29 Total: 121.67 kcal Total: -61.50 0.29 -61.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.759 kcal (2) G-P(sol) polarization free energy of solvation -61.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds