Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47656 * 2 1 4 4 O 1.42904 * 109.47024 * 239.99838 * 2 1 3 5 5 C 1.53001 * 109.47079 * 120.00114 * 2 1 3 6 6 H 1.08996 * 109.58465 * 299.85094 * 5 2 1 7 7 C 1.53191 * 109.58753 * 60.28371 * 5 2 1 8 8 C 1.53038 * 109.31220 * 174.42228 * 7 5 2 9 9 C 1.53072 * 109.65986 * 298.69444 * 8 7 5 10 10 C 1.53202 * 109.29204 * 61.15655 * 9 8 7 11 11 N 1.46927 * 108.88995 * 305.57521 * 10 9 8 12 12 S 1.65599 * 120.62950 * 233.55495 * 11 10 9 13 13 O 1.42099 * 106.39885 * 210.30477 * 12 11 10 14 14 O 1.42091 * 106.40300 * 343.22819 * 12 11 10 15 15 C 1.76198 * 107.21482 * 96.76993 * 12 11 10 16 16 C 1.37637 * 120.13046 * 116.81079 * 15 12 11 17 17 C 1.38617 * 120.25121 * 179.69463 * 16 15 12 18 18 C 1.38665 * 120.49708 * 0.60598 * 17 16 15 19 19 C 1.37594 * 120.24692 * 359.67565 * 18 17 16 20 20 C 1.40700 * 120.12741 * 297.08306 * 15 12 11 21 21 C 1.41399 * 120.24373 * 0.02903 * 20 15 12 22 22 H 1.07998 * 120.00079 * 329.21391 * 21 20 15 23 23 C 1.39949 * 119.99738 * 149.20588 * 21 20 15 24 24 N 1.30829 * 119.99275 * 167.49769 * 23 21 20 25 25 Si 1.86790 * 120.00354 * 347.50040 * 23 21 20 26 26 H 1.48503 * 109.47400 * 93.16257 * 25 23 21 27 27 H 1.48500 * 109.46982 * 213.16492 * 25 23 21 28 28 H 1.48497 * 109.47290 * 333.16389 * 25 23 21 29 29 H 1.09001 * 109.47366 * 299.99954 * 1 2 3 30 30 H 1.08998 * 109.47433 * 59.99932 * 1 2 3 31 31 H 1.09006 * 109.47469 * 180.02562 * 1 2 3 32 32 H 0.96691 * 114.00055 * 300.00224 * 4 2 1 33 33 H 1.08998 * 109.49908 * 294.37649 * 7 5 2 34 34 H 1.09001 * 109.49672 * 54.46710 * 7 5 2 35 35 H 1.08997 * 109.46340 * 58.65527 * 8 7 5 36 36 H 1.09002 * 109.45649 * 178.62622 * 8 7 5 37 37 H 1.08994 * 109.39441 * 301.28533 * 9 8 7 38 38 H 1.09001 * 109.62673 * 181.16766 * 9 8 7 39 39 H 1.08993 * 109.58529 * 185.71973 * 10 9 8 40 40 H 1.08999 * 109.58379 * 65.43822 * 10 9 8 41 41 H 1.08005 * 119.87546 * 0.02562 * 16 15 12 42 42 H 1.07996 * 119.75296 * 180.30268 * 17 16 15 43 43 H 1.07996 * 119.87245 * 179.69758 * 18 17 16 44 44 H 1.07999 * 120.12759 * 180.02562 * 19 18 17 45 45 H 0.97005 * 119.99646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 1 1.6798 -0.2074 2.1404 7 6 1.5366 -2.1681 1.2483 8 6 2.1619 -2.9223 2.4241 9 6 3.6849 -2.9408 2.2725 10 6 4.2120 -1.5023 2.2815 11 7 3.5092 -0.7317 1.2466 12 16 4.3569 0.1087 0.0988 13 8 3.5561 1.2292 -0.2510 14 8 5.6862 0.2254 0.5871 15 6 4.4417 -0.9097 -1.3366 16 6 3.8493 -0.5008 -2.5097 17 6 3.9199 -1.2971 -3.6422 18 6 4.5759 -2.5182 -3.6041 19 6 5.1703 -2.9496 -2.4406 20 6 5.1104 -2.1466 -1.2864 21 6 5.7173 -2.5799 -0.0850 22 1 6.1159 -1.8561 0.6103 23 6 5.8011 -3.9469 0.2031 24 7 6.5674 -4.3640 1.1780 25 14 4.8192 -5.1757 -0.8043 26 1 5.6566 -5.6817 -1.9214 27 1 4.4102 -6.3109 0.0614 28 1 3.6100 -4.5115 -1.3537 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7209 -1.5952 -1.2329 33 1 0.4511 -2.1758 1.3471 34 1 1.8206 -2.6515 0.3136 35 1 1.8978 -2.4240 3.3568 36 1 1.7864 -3.9455 2.4401 37 1 3.9490 -3.4191 1.3294 38 1 4.1284 -3.4958 3.0992 39 1 5.2817 -1.5038 2.0726 40 1 4.0310 -1.0530 3.2579 41 1 3.3321 0.4465 -2.5496 42 1 3.4564 -0.9662 -4.5598 43 1 4.6205 -3.1327 -4.4910 44 1 5.6810 -3.9008 -2.4132 45 1 6.6259 -5.3115 1.3775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -81.563669 kcal Electronic energy + Delta-G solvation = -31478.465986 eV Core-core repulsion = 27588.479454 eV Total energy + Delta-G solvation = -3889.986532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.18688 -37.73069 -36.89984 -35.47924 -34.86044 -33.79422 -31.97530 -31.65337 -30.59400 -29.89552 -28.86295 -25.29847 -24.20027 -23.65799 -21.99385 -21.15308 -20.84747 -19.84461 -18.09952 -17.66537 -17.33515 -16.33663 -15.91265 -15.43614 -15.34262 -14.94256 -14.24861 -14.19371 -14.08913 -13.81583 -13.65450 -13.44558 -13.14717 -12.89961 -12.80406 -12.41097 -12.26140 -12.17556 -11.84209 -11.72668 -11.46997 -11.19943 -11.14735 -11.09246 -10.96003 -10.84974 -10.78254 -10.53809 -10.37581 -10.18681 -9.94804 -9.75559 -9.56745 -9.34603 -9.28413 -9.09362 -8.29902 -7.92130 -7.61273 -7.11696 -4.76768 1.58526 2.25838 2.66199 2.96660 3.04299 3.13851 3.77112 3.81206 4.31927 4.73234 4.78062 4.95419 5.08759 5.22452 5.27548 5.41170 5.45370 5.59143 5.61358 5.66781 5.77010 5.89080 5.94391 5.96988 6.06875 6.08585 6.14237 6.24945 6.27342 6.32714 6.40720 6.51344 6.53432 6.59078 6.74109 6.76520 6.94189 7.06594 7.10406 7.23229 7.31853 7.49903 7.57562 7.71564 7.96862 8.08675 8.21669 8.43163 8.61969 9.85890 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.008526 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.311869 B = 3283.306836 C = 3981.636331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.028 3.972 3 H 0.170 0.830 4 O -0.533 6.533 5 C 0.135 3.865 6 H 0.074 0.926 7 C -0.134 4.134 8 C -0.114 4.114 9 C -0.136 4.136 10 C 0.130 3.870 11 N -0.984 5.984 12 S 2.714 3.286 13 O -0.992 6.992 14 O -0.980 6.980 15 C -0.734 4.734 16 C 0.071 3.929 17 C -0.270 4.270 18 C -0.043 4.043 19 C -0.248 4.248 20 C 0.164 3.836 21 C -0.464 4.464 22 H 0.126 0.874 23 C 0.095 3.905 24 N -0.785 5.785 25 Si 0.902 3.098 26 H -0.271 1.271 27 H -0.291 1.291 28 H -0.240 1.240 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.363 0.637 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.405 0.729 1.817 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.032 4.032 3 H 0.186 0.814 4 O -0.340 6.340 5 C 0.028 3.972 6 H 0.092 0.908 7 C -0.172 4.172 8 C -0.152 4.152 9 C -0.175 4.175 10 C 0.005 3.995 11 N -0.820 5.820 12 S 2.814 3.186 13 O -0.982 6.982 14 O -0.971 6.971 15 C -0.829 4.829 16 C 0.051 3.949 17 C -0.291 4.291 18 C -0.062 4.062 19 C -0.268 4.268 20 C 0.159 3.841 21 C -0.491 4.491 22 H 0.143 0.857 23 C -0.127 4.127 24 N -0.408 5.408 25 Si 0.729 3.271 26 H -0.198 1.198 27 H -0.218 1.218 28 H -0.163 1.163 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.213 0.787 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.067 0.933 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.615 1.997 2.103 10.043 hybrid contribution -0.830 -2.277 -0.697 2.522 sum -10.445 -0.280 1.405 10.542 Atomic orbital electron populations 1.22435 0.96529 1.01980 1.02322 1.23653 0.93687 1.01713 0.84147 0.81410 1.87164 1.75156 1.28817 1.42825 1.21546 0.80331 0.96181 0.99188 0.90793 1.21980 0.99271 0.95941 1.00052 1.21463 0.96854 0.99307 0.97528 1.22016 0.93906 0.97464 1.04079 1.21420 0.98464 0.90470 0.89142 1.57563 1.13157 1.67090 1.44160 1.00726 0.71754 0.73112 0.73002 1.93230 1.68657 1.51577 1.84784 1.93481 1.36560 1.86444 1.80568 1.29789 1.20536 1.16088 1.16479 1.20149 0.87811 0.96530 0.90456 1.20483 1.12093 0.98173 0.98331 1.20765 0.94180 0.95107 0.96153 1.21075 1.09450 1.01984 0.94276 1.17106 0.85514 0.89164 0.92270 1.20295 1.30698 0.94048 1.04099 0.85709 1.26068 0.93069 0.99203 0.94341 1.69664 1.27795 1.18117 1.25185 0.86511 0.82513 0.78926 0.79128 1.19781 1.21816 1.16295 0.92139 0.91762 0.92665 0.78735 0.91615 0.91131 0.92668 0.92706 0.89122 0.91838 0.87338 0.93278 0.86692 0.88702 0.88955 0.88257 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.19 37.15 0.34 -1.65 16 2 C 0.03 0.41 2.52 -26.73 -0.07 0.34 16 3 H 0.17 2.86 5.01 -54.19 -0.27 2.59 16 4 O -0.53 -8.76 6.08 -54.82 -0.33 -9.09 16 5 C 0.13 1.99 2.80 -67.60 -0.19 1.80 16 6 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 7 C -0.13 -1.81 4.68 -26.61 -0.12 -1.93 16 8 C -0.11 -1.59 5.88 -26.67 -0.16 -1.75 16 9 C -0.14 -2.34 5.73 -26.59 -0.15 -2.49 16 10 C 0.13 2.36 5.37 -3.70 -0.02 2.34 16 11 N -0.98 -17.82 3.19 -106.47 -0.34 -18.16 16 12 S 2.71 57.99 4.44 -107.50 -0.48 57.51 16 13 O -0.99 -20.91 12.35 -65.41 -0.81 -21.72 16 14 O -0.98 -24.24 14.69 -57.17 -0.84 -25.08 16 15 C -0.73 -16.31 4.60 -38.87 -0.18 -16.49 16 16 C 0.07 1.47 6.68 -39.66 -0.26 1.20 16 17 C -0.27 -5.43 10.05 -39.28 -0.39 -5.82 16 18 C -0.04 -0.90 10.02 -39.66 -0.40 -1.29 16 19 C -0.25 -5.67 6.98 -38.87 -0.27 -5.94 16 20 C 0.16 3.89 5.14 -106.82 -0.55 3.34 16 21 C -0.46 -11.29 6.21 -37.74 -0.23 -11.52 16 22 H 0.13 3.28 3.96 -52.49 -0.21 3.07 16 23 C 0.09 2.20 3.65 -17.34 -0.06 2.14 16 24 N -0.79 -18.40 13.93 55.55 0.77 -17.62 16 25 Si 0.90 18.89 23.42 -169.99 -3.98 14.91 16 26 H -0.27 -5.73 6.69 56.52 0.38 -5.35 16 27 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.24 -5.03 6.64 56.52 0.38 -4.65 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.57 6.57 -51.93 -0.34 0.23 16 32 H 0.36 5.49 7.22 45.56 0.33 5.81 16 33 H 0.07 0.73 6.76 -51.93 -0.35 0.38 16 34 H 0.07 1.05 6.53 -51.93 -0.34 0.71 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.77 3.77 -51.93 -0.20 1.58 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.11 2.30 4.78 -51.93 -0.25 2.06 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.12 2.30 6.80 -52.48 -0.36 1.94 16 42 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.10 2.26 4.39 -52.49 -0.23 2.03 16 45 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -27.18 325.24 -9.03 -36.21 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.20 Total: 15.86 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: -2.72 Total: -37.73 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.43 Total: -35.78 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -1.98 Total: -55.89 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -3.98 Total: 14.91 kcal Atomic # 16 Polarization: 57.99 SS G_CDS: -0.48 Total: 57.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.18 -9.03 -36.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.353 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds