Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47656 * 2 1 4 4 O 1.42904 * 109.47024 * 239.99838 * 2 1 3 5 5 C 1.53001 * 109.47079 * 120.00114 * 2 1 3 6 6 H 1.08996 * 109.58465 * 299.85094 * 5 2 1 7 7 C 1.53191 * 109.58753 * 60.28371 * 5 2 1 8 8 C 1.53038 * 109.31220 * 174.42228 * 7 5 2 9 9 C 1.53072 * 109.65986 * 298.69444 * 8 7 5 10 10 C 1.53202 * 109.29204 * 61.15655 * 9 8 7 11 11 N 1.46927 * 108.88995 * 305.57521 * 10 9 8 12 12 S 1.65599 * 120.62950 * 233.55495 * 11 10 9 13 13 O 1.42099 * 106.39885 * 210.30477 * 12 11 10 14 14 O 1.42091 * 106.40300 * 343.22819 * 12 11 10 15 15 C 1.76198 * 107.21482 * 96.76993 * 12 11 10 16 16 C 1.37637 * 120.13046 * 116.81079 * 15 12 11 17 17 C 1.38617 * 120.25121 * 179.69463 * 16 15 12 18 18 C 1.38665 * 120.49708 * 0.60598 * 17 16 15 19 19 C 1.37594 * 120.24692 * 359.67565 * 18 17 16 20 20 C 1.40700 * 120.12741 * 297.08306 * 15 12 11 21 21 C 1.41399 * 120.24373 * 0.02903 * 20 15 12 22 22 H 1.07998 * 120.00079 * 329.21391 * 21 20 15 23 23 C 1.39949 * 119.99738 * 149.20588 * 21 20 15 24 24 N 1.30829 * 119.99275 * 167.49769 * 23 21 20 25 25 Si 1.86790 * 120.00354 * 347.50040 * 23 21 20 26 26 H 1.48503 * 109.47400 * 93.16257 * 25 23 21 27 27 H 1.48500 * 109.46982 * 213.16492 * 25 23 21 28 28 H 1.48497 * 109.47290 * 333.16389 * 25 23 21 29 29 H 1.09001 * 109.47366 * 299.99954 * 1 2 3 30 30 H 1.08998 * 109.47433 * 59.99932 * 1 2 3 31 31 H 1.09006 * 109.47469 * 180.02562 * 1 2 3 32 32 H 0.96691 * 114.00055 * 300.00224 * 4 2 1 33 33 H 1.08998 * 109.49908 * 294.37649 * 7 5 2 34 34 H 1.09001 * 109.49672 * 54.46710 * 7 5 2 35 35 H 1.08997 * 109.46340 * 58.65527 * 8 7 5 36 36 H 1.09002 * 109.45649 * 178.62622 * 8 7 5 37 37 H 1.08994 * 109.39441 * 301.28533 * 9 8 7 38 38 H 1.09001 * 109.62673 * 181.16766 * 9 8 7 39 39 H 1.08993 * 109.58529 * 185.71973 * 10 9 8 40 40 H 1.08999 * 109.58379 * 65.43822 * 10 9 8 41 41 H 1.08005 * 119.87546 * 0.02562 * 16 15 12 42 42 H 1.07996 * 119.75296 * 180.30268 * 17 16 15 43 43 H 1.07996 * 119.87245 * 179.69758 * 18 17 16 44 44 H 1.07999 * 120.12759 * 180.02562 * 19 18 17 45 45 H 0.97005 * 119.99646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 1 1.6798 -0.2074 2.1404 7 6 1.5366 -2.1681 1.2483 8 6 2.1619 -2.9223 2.4241 9 6 3.6849 -2.9408 2.2725 10 6 4.2120 -1.5023 2.2815 11 7 3.5092 -0.7317 1.2466 12 16 4.3569 0.1087 0.0988 13 8 3.5561 1.2292 -0.2510 14 8 5.6862 0.2254 0.5871 15 6 4.4417 -0.9097 -1.3366 16 6 3.8493 -0.5008 -2.5097 17 6 3.9199 -1.2971 -3.6422 18 6 4.5759 -2.5182 -3.6041 19 6 5.1703 -2.9496 -2.4406 20 6 5.1104 -2.1466 -1.2864 21 6 5.7173 -2.5799 -0.0850 22 1 6.1159 -1.8561 0.6103 23 6 5.8011 -3.9469 0.2031 24 7 6.5674 -4.3640 1.1780 25 14 4.8192 -5.1757 -0.8043 26 1 5.6566 -5.6817 -1.9214 27 1 4.4102 -6.3109 0.0614 28 1 3.6100 -4.5115 -1.3537 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7209 -1.5952 -1.2329 33 1 0.4511 -2.1758 1.3471 34 1 1.8206 -2.6515 0.3136 35 1 1.8978 -2.4240 3.3568 36 1 1.7864 -3.9455 2.4401 37 1 3.9490 -3.4191 1.3294 38 1 4.1284 -3.4958 3.0992 39 1 5.2817 -1.5038 2.0726 40 1 4.0310 -1.0530 3.2579 41 1 3.3321 0.4465 -2.5496 42 1 3.4564 -0.9662 -4.5598 43 1 4.6205 -3.1327 -4.4910 44 1 5.6810 -3.9008 -2.4132 45 1 6.6259 -5.3115 1.3775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -100.078153 kcal Electronic energy + Delta-G solvation = -31479.268834 eV Core-core repulsion = 27588.479454 eV Total energy + Delta-G solvation = -3890.789380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44620 -39.40186 -38.45450 -36.91818 -36.60744 -35.50633 -33.26921 -32.87871 -32.30431 -31.55131 -29.98323 -27.02584 -25.36435 -24.94264 -23.65621 -22.81538 -22.11357 -21.14787 -19.64481 -19.40328 -18.84676 -17.92478 -17.29287 -17.01840 -16.76943 -16.26883 -15.80314 -15.68474 -15.37122 -15.27633 -15.20222 -15.01991 -14.51305 -14.45174 -14.18758 -13.89597 -13.60197 -13.41039 -13.37050 -12.99554 -12.93466 -12.85928 -12.72486 -12.67533 -12.45660 -12.29973 -12.16075 -12.00027 -11.75279 -11.64866 -11.41241 -11.26792 -11.02903 -10.91939 -10.75088 -10.47152 -9.73759 -9.52587 -9.30523 -8.85883 -6.55737 -0.04182 0.56778 0.96191 1.27543 1.37089 1.46966 2.09547 2.29616 2.62657 3.10510 3.42638 3.58501 3.77891 3.92726 4.00644 4.13630 4.30072 4.35679 4.38356 4.43043 4.46339 4.54050 4.61736 4.74279 4.77664 4.88901 4.92130 4.93725 4.99609 5.04597 5.07707 5.15991 5.28880 5.36519 5.37669 5.39142 5.48476 5.55597 5.65302 5.72731 5.76990 5.86503 6.01382 6.04261 6.25008 6.42581 6.68952 6.85208 6.94084 8.16684 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.008526 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.311869 B = 3283.306836 C = 3981.636331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 H 0.145 0.855 4 O -0.550 6.550 5 C 0.128 3.872 6 H 0.098 0.902 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.136 4.136 10 C 0.130 3.870 11 N -0.979 5.979 12 S 2.719 3.281 13 O -0.993 6.993 14 O -1.023 7.023 15 C -0.740 4.740 16 C 0.068 3.932 17 C -0.262 4.262 18 C -0.041 4.041 19 C -0.273 4.273 20 C 0.150 3.850 21 C -0.482 4.482 22 H 0.096 0.904 23 C 0.078 3.922 24 N -0.816 5.816 25 Si 0.943 3.057 26 H -0.275 1.275 27 H -0.280 1.280 28 H -0.239 1.239 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.369 0.631 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 0.275 1.147 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 H 0.162 0.838 4 O -0.358 6.358 5 C 0.022 3.978 6 H 0.116 0.884 7 C -0.167 4.167 8 C -0.147 4.147 9 C -0.175 4.175 10 C 0.005 3.995 11 N -0.817 5.817 12 S 2.819 3.181 13 O -0.984 6.984 14 O -1.014 7.014 15 C -0.835 4.835 16 C 0.049 3.951 17 C -0.282 4.282 18 C -0.060 4.060 19 C -0.292 4.292 20 C 0.145 3.855 21 C -0.510 4.510 22 H 0.114 0.886 23 C -0.141 4.141 24 N -0.440 5.440 25 Si 0.768 3.232 26 H -0.201 1.201 27 H -0.207 1.207 28 H -0.162 1.162 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.219 0.781 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.113 0.887 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.854 1.553 1.425 13.025 hybrid contribution 0.143 -2.004 -0.535 2.079 sum -12.711 -0.452 0.891 12.750 Atomic orbital electron populations 1.22340 0.93354 1.03345 1.03265 1.23554 0.96127 1.00061 0.83536 0.83789 1.87086 1.75875 1.29278 1.43558 1.21908 0.77950 0.97678 1.00278 0.88403 1.21977 1.01280 0.94367 0.99083 1.21454 0.93968 1.00547 0.98722 1.21965 0.96675 0.96151 1.02660 1.21366 0.96564 0.91680 0.89889 1.57311 1.14701 1.66672 1.42985 1.00396 0.71082 0.73396 0.73197 1.93271 1.68132 1.52002 1.84997 1.93426 1.39477 1.87199 1.81306 1.29960 1.20398 1.15554 1.17544 1.20312 0.87545 0.96971 0.90316 1.20858 1.10821 0.97499 0.99024 1.21116 0.92925 0.95533 0.96408 1.21177 1.10846 1.02223 0.94966 1.17248 0.85825 0.90001 0.92382 1.20135 1.32324 0.94202 1.04345 0.88643 1.26433 0.93255 0.99728 0.94717 1.69685 1.29092 1.18809 1.26375 0.85878 0.81483 0.77664 0.78143 1.20144 1.20652 1.16249 0.90299 0.91808 0.91015 0.78123 0.87998 0.92687 0.90598 0.91435 0.91546 0.92149 0.91202 0.90969 0.85986 0.85645 0.85809 0.88668 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.19 71.98 0.66 -2.49 16 2 C 0.03 0.74 2.52 30.59 0.08 0.82 16 3 H 0.15 4.72 5.01 -38.15 -0.19 4.53 16 4 O -0.55 -17.18 6.08 -130.25 -0.79 -17.98 16 5 C 0.13 3.48 2.80 44.97 0.13 3.60 16 6 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 7 C -0.13 -3.07 4.68 30.67 0.14 -2.92 16 8 C -0.11 -2.76 5.88 30.63 0.18 -2.58 16 9 C -0.14 -4.63 5.73 30.69 0.18 -4.45 16 10 C 0.13 4.81 5.37 86.37 0.46 5.28 16 11 N -0.98 -35.29 3.19 -490.76 -1.56 -36.85 16 12 S 2.72 118.79 4.44 -56.49 -0.25 118.54 16 13 O -0.99 -42.06 12.35 -120.12 -1.48 -43.55 16 14 O -1.02 -53.43 14.69 -128.00 -1.88 -55.31 16 15 C -0.74 -33.08 4.60 22.73 0.10 -32.97 16 16 C 0.07 2.77 6.68 22.22 0.15 2.91 16 17 C -0.26 -9.82 10.05 22.46 0.23 -9.59 16 18 C -0.04 -1.62 10.02 22.22 0.22 -1.40 16 19 C -0.27 -12.30 6.98 22.73 0.16 -12.14 16 20 C 0.15 7.20 5.14 -21.29 -0.11 7.09 16 21 C -0.48 -24.44 6.21 23.46 0.15 -24.30 16 22 H 0.10 5.38 3.96 -2.91 -0.01 5.37 16 23 C 0.08 3.71 3.65 85.26 0.31 4.02 16 24 N -0.82 -39.67 13.93 21.83 0.30 -39.37 16 25 Si 0.94 38.81 23.42 68.60 1.61 40.42 16 26 H -0.27 -11.34 6.69 99.48 0.67 -10.67 16 27 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.24 -9.73 6.64 99.48 0.66 -9.07 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.15 6.57 -2.38 -0.02 1.13 16 32 H 0.37 10.45 7.22 -74.06 -0.53 9.92 16 33 H 0.10 1.74 6.76 -2.39 -0.02 1.72 16 34 H 0.05 1.51 6.53 -2.39 -0.02 1.49 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 2.63 3.77 -2.39 -0.01 2.62 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 3.17 4.78 -2.39 -0.01 3.16 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.12 4.73 6.80 -2.91 -0.02 4.71 16 42 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 43 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.10 4.31 4.39 -2.91 -0.01 4.30 16 45 H 0.30 13.00 8.30 -92.70 -0.77 12.23 16 Total: -1.00 -61.13 325.24 -0.78 -61.91 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: 0.24 Total: 41.30 kcal Atomic # 6 Polarization: -72.15 SS G_CDS: 3.04 Total: -69.12 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.26 Total: -76.22 kcal Atomic # 8 Polarization: -112.68 SS G_CDS: -4.16 Total: -116.83 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.61 Total: 40.42 kcal Atomic # 16 Polarization: 118.79 SS G_CDS: -0.25 Total: 118.54 kcal Total: -61.13 -0.78 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.166 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds