Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47032 * 2 1 4 4 O 1.42898 * 109.46819 * 240.00212 * 2 1 3 5 5 C 1.53000 * 109.47261 * 120.00207 * 2 1 3 6 6 H 1.08998 * 109.58388 * 62.23919 * 5 2 1 7 7 C 1.53195 * 109.58309 * 301.81407 * 5 2 1 8 8 C 1.53046 * 109.30897 * 185.58002 * 7 5 2 9 9 C 1.53034 * 109.54243 * 61.36209 * 8 7 5 10 10 C 1.53188 * 109.31496 * 298.63742 * 9 8 7 11 11 N 1.46925 * 109.58489 * 182.52404 * 5 2 1 12 12 S 1.65596 * 120.63255 * 353.41680 * 11 5 2 13 13 O 1.42094 * 106.39997 * 30.84467 * 12 11 5 14 14 O 1.42097 * 106.39994 * 163.76550 * 12 11 5 15 15 C 1.76202 * 107.21452 * 277.30339 * 12 11 5 16 16 C 1.37638 * 120.12408 * 118.30944 * 15 12 11 17 17 C 1.38619 * 120.24726 * 179.72102 * 16 15 12 18 18 C 1.38654 * 120.49690 * 0.55002 * 17 16 15 19 19 C 1.37601 * 120.25446 * 359.72292 * 18 17 16 20 20 C 1.40697 * 120.13018 * 298.57148 * 15 12 11 21 21 C 1.41395 * 120.24209 * 359.97438 * 20 15 12 22 22 H 1.08001 * 119.99817 * 327.34926 * 21 20 15 23 23 C 1.39939 * 120.00149 * 147.35436 * 21 20 15 24 24 N 1.30830 * 120.00130 * 349.62426 * 23 21 20 25 25 Si 1.86805 * 120.00351 * 169.62712 * 23 21 20 26 26 H 1.48497 * 109.47010 * 89.99607 * 25 23 21 27 27 H 1.48499 * 109.46923 * 209.99926 * 25 23 21 28 28 H 1.48504 * 109.46600 * 329.99605 * 25 23 21 29 29 H 1.09002 * 109.47019 * 306.59347 * 1 2 3 30 30 H 1.09002 * 109.47207 * 66.59123 * 1 2 3 31 31 H 1.09006 * 109.47220 * 186.59810 * 1 2 3 32 32 H 0.96701 * 113.99819 * 305.82147 * 4 2 1 33 33 H 1.08996 * 109.49959 * 305.52351 * 7 5 2 34 34 H 1.08992 * 109.50034 * 65.63055 * 7 5 2 35 35 H 1.09003 * 109.46120 * 301.33754 * 8 7 5 36 36 H 1.09004 * 109.44759 * 181.38012 * 8 7 5 37 37 H 1.08996 * 109.50227 * 178.68375 * 9 8 7 38 38 H 1.09004 * 109.49827 * 58.58512 * 9 8 7 39 39 H 1.08996 * 109.58928 * 294.84766 * 10 9 8 40 40 H 1.08998 * 109.71087 * 174.48742 * 10 9 8 41 41 H 1.08002 * 119.87896 * 359.96823 * 16 15 12 42 42 H 1.07997 * 119.75154 * 180.25209 * 17 16 15 43 43 H 1.08005 * 119.87388 * 179.75007 * 18 17 16 44 44 H 1.07993 * 120.13305 * 180.02562 * 19 18 17 45 45 H 0.97000 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7109 -1.7602 1.2312 7 6 1.4938 -0.0280 2.5014 8 6 2.1169 -0.6657 3.7453 9 6 3.6351 -0.4764 3.7118 10 6 4.2055 -1.1747 2.4733 11 7 3.5080 -0.6702 1.2826 12 16 4.3602 -0.0551 0.0028 13 8 3.5356 0.9406 -0.5868 14 8 5.6719 0.2061 0.4827 15 6 4.5138 -1.3438 -1.1890 16 6 3.9671 -1.1936 -2.4432 17 6 4.0914 -2.2034 -3.3846 18 6 4.7566 -3.3791 -3.0718 19 6 5.3061 -3.5534 -1.8224 20 6 5.1910 -2.5325 -0.8605 21 6 5.7523 -2.7000 0.4264 22 1 6.1432 -1.8464 0.9603 23 6 5.8015 -3.9718 1.0083 24 7 5.1529 -4.9673 0.4606 25 14 6.7931 -4.2481 2.5671 26 1 5.9293 -4.0118 3.7517 27 1 7.2967 -5.6449 2.5923 28 1 7.9417 -3.3072 2.5963 29 1 -0.3633 0.6126 0.8251 30 1 -0.3634 0.4083 -0.9431 31 1 -0.3634 -1.0209 0.1181 32 1 1.6499 -1.5655 -1.2790 33 1 1.7471 1.0316 2.4703 34 1 0.4106 -0.1428 2.5376 35 1 1.8840 -1.7304 3.7630 36 1 1.7113 -0.1906 4.6386 37 1 4.0758 -0.9102 4.6093 38 1 3.8682 0.5875 3.6692 39 1 4.0529 -2.2506 2.5576 40 1 5.2713 -0.9623 2.3898 41 1 3.4427 -0.2840 -2.6961 42 1 3.6629 -2.0754 -4.3676 43 1 4.8440 -4.1610 -3.8117 44 1 5.8241 -4.4697 -1.5809 45 1 5.1867 -5.8487 0.8641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -110.919482 kcal Electronic energy + Delta-G solvation = -30787.208516 eV Core-core repulsion = 26895.949021 eV Total energy + Delta-G solvation = -3891.259495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26051 -39.25136 -38.43774 -36.92617 -36.49528 -35.55421 -33.26191 -33.09016 -31.85079 -31.19803 -29.85507 -27.23712 -25.35719 -24.75535 -23.28964 -22.84997 -22.26606 -21.29798 -19.72894 -19.31860 -18.53023 -17.64255 -17.25531 -17.10258 -16.68588 -16.26278 -15.89390 -15.49461 -15.27609 -15.13920 -14.91722 -14.69979 -14.48248 -14.45486 -14.32191 -13.95091 -13.61396 -13.23089 -13.04684 -12.97957 -12.89023 -12.86126 -12.71770 -12.68679 -12.41699 -12.22481 -12.12280 -12.05689 -11.83907 -11.71413 -11.49678 -11.34530 -11.11036 -10.90062 -10.79867 -10.48739 -9.72271 -9.51859 -9.21760 -8.70558 -6.51847 0.03189 0.70195 1.08728 1.36372 1.46114 1.50611 2.17570 2.36821 2.70966 3.18070 3.50132 3.63893 3.67338 3.89399 4.09227 4.13255 4.24993 4.33111 4.38070 4.49124 4.51251 4.62891 4.67005 4.67165 4.81542 4.85754 4.94785 4.97867 5.03659 5.11611 5.14564 5.21838 5.25517 5.30927 5.34871 5.40832 5.47225 5.49175 5.61513 5.67893 5.86393 5.94517 6.06540 6.12892 6.25986 6.60658 6.81337 6.95613 6.97896 8.26487 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.008139 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.905686 B = 3439.423465 C = 4957.600555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.054 3.946 3 H 0.130 0.870 4 O -0.553 6.553 5 C 0.127 3.873 6 H 0.068 0.932 7 C -0.121 4.121 8 C -0.112 4.112 9 C -0.134 4.134 10 C 0.122 3.878 11 N -0.978 5.978 12 S 2.723 3.277 13 O -0.985 6.985 14 O -1.026 7.026 15 C -0.759 4.759 16 C 0.030 3.970 17 C -0.260 4.260 18 C -0.075 4.075 19 C -0.192 4.192 20 C 0.165 3.835 21 C -0.502 4.502 22 H 0.094 0.906 23 C 0.057 3.943 24 N -0.809 5.809 25 Si 0.945 3.055 26 H -0.240 1.240 27 H -0.265 1.265 28 H -0.264 1.264 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.369 0.631 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 3.419 6.716 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 H 0.147 0.853 4 O -0.360 6.360 5 C 0.021 3.979 6 H 0.086 0.914 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.174 4.174 10 C -0.003 4.003 11 N -0.816 5.816 12 S 2.823 3.177 13 O -0.976 6.976 14 O -1.017 7.017 15 C -0.853 4.853 16 C 0.011 3.989 17 C -0.280 4.280 18 C -0.094 4.094 19 C -0.212 4.212 20 C 0.161 3.839 21 C -0.531 4.531 22 H 0.112 0.888 23 C -0.161 4.161 24 N -0.433 5.433 25 Si 0.765 3.235 26 H -0.164 1.164 27 H -0.189 1.189 28 H -0.188 1.188 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.217 0.783 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.165 4.588 6.626 12.205 hybrid contribution 0.446 -1.918 0.002 1.969 sum -8.720 2.670 6.627 11.273 Atomic orbital electron populations 1.22417 0.93578 1.03218 1.03482 1.23109 0.95280 0.99226 0.82936 0.85255 1.87052 1.71382 1.32512 1.45038 1.21913 0.78246 1.00218 0.97510 0.91400 1.21942 1.01316 0.99887 0.92894 1.21468 0.94001 1.01273 0.98193 1.21986 0.97495 1.00907 0.96971 1.21515 0.96140 0.98315 0.84335 1.57225 1.14625 1.79729 1.30007 1.00312 0.71095 0.73821 0.72483 1.93405 1.66793 1.58822 1.78544 1.93388 1.40969 1.85812 1.81490 1.30206 1.21348 1.19522 1.14175 1.20401 0.90308 0.97351 0.90855 1.20866 1.10812 0.96100 1.00197 1.21156 0.95659 0.96747 0.95800 1.21361 1.05768 1.00586 0.93507 1.17345 0.84752 0.89365 0.92410 1.20288 1.35677 0.95963 1.01187 0.88806 1.26449 0.93665 0.94482 1.01469 1.69825 1.32030 1.02490 1.38988 0.85743 0.80016 0.78794 0.78911 1.16386 1.18950 1.18784 0.89659 0.91703 0.91585 0.78321 0.91462 0.88056 0.91901 0.89443 0.89537 0.91784 0.92271 0.91077 0.85761 0.86262 0.86823 0.88056 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 8.89 71.98 0.64 -2.89 16 2 C 0.05 1.62 2.30 30.59 0.07 1.69 16 3 H 0.13 4.44 5.60 -15.95 -0.09 4.35 16 4 O -0.55 -19.19 5.93 -125.94 -0.75 -19.93 16 5 C 0.13 3.75 2.76 44.98 0.12 3.88 16 6 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 7 C -0.12 -2.67 4.80 30.67 0.15 -2.52 16 8 C -0.11 -2.38 5.88 30.62 0.18 -2.20 16 9 C -0.13 -3.55 6.08 30.67 0.19 -3.36 16 10 C 0.12 4.39 4.73 86.36 0.41 4.79 16 11 N -0.98 -36.35 3.17 -490.77 -1.56 -37.90 16 12 S 2.72 122.53 4.47 -56.49 -0.25 122.28 16 13 O -0.99 -43.52 11.54 -118.61 -1.37 -44.89 16 14 O -1.03 -52.83 14.59 -128.00 -1.87 -54.69 16 15 C -0.76 -36.63 5.10 22.73 0.12 -36.51 16 16 C 0.03 1.36 7.21 22.22 0.16 1.52 16 17 C -0.26 -11.05 10.05 22.46 0.23 -10.83 16 18 C -0.07 -3.36 10.02 22.22 0.22 -3.13 16 19 C -0.19 -9.77 8.64 22.73 0.20 -9.57 16 20 C 0.17 8.60 5.50 -21.29 -0.12 8.49 16 21 C -0.50 -25.67 6.38 23.46 0.15 -25.52 16 22 H 0.09 4.93 4.11 -2.91 -0.01 4.92 16 23 C 0.06 2.69 5.24 85.25 0.45 3.14 16 24 N -0.81 -38.86 11.10 21.83 0.24 -38.62 16 25 Si 0.95 36.01 29.57 68.60 2.03 38.04 16 26 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 27 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 28 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 29 H 0.08 1.41 6.92 -2.39 -0.02 1.39 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.37 11.51 8.91 -74.06 -0.66 10.85 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.64 6.89 -2.39 -0.02 1.62 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 40 H 0.07 2.88 5.45 -2.39 -0.01 2.87 16 41 H 0.12 5.34 6.40 -2.91 -0.02 5.32 16 42 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 43 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 44 H 0.10 5.32 6.52 -2.91 -0.02 5.31 16 45 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 Total: -1.00 -63.12 343.54 -0.08 -63.20 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: 0.29 Total: 45.55 kcal Atomic # 6 Polarization: -76.18 SS G_CDS: 3.16 Total: -73.03 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.31 Total: -76.52 kcal Atomic # 8 Polarization: -115.53 SS G_CDS: -3.98 Total: -119.51 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 16 Polarization: 122.53 SS G_CDS: -0.25 Total: 122.28 kcal Total: -63.12 -0.08 -63.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.724 kcal (2) G-P(sol) polarization free energy of solvation -63.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds