Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20762 * 119.99809 * 2 1 4 4 C 1.50698 * 119.99996 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47103 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47366 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47329 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47385 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47488 * 179.97438 * 8 7 6 10 10 S 1.65599 * 120.00214 * 164.99885 * 9 8 7 11 11 O 1.42099 * 106.39938 * 311.46446 * 10 9 8 12 12 O 1.42092 * 106.40136 * 178.53974 * 10 9 8 13 13 C 1.76199 * 107.21588 * 64.99779 * 10 9 8 14 14 C 1.38649 * 119.87924 * 270.25539 * 13 10 9 15 15 C 1.38617 * 120.50384 * 180.30415 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87027 * 90.00133 * 13 10 9 27 27 H 1.09003 * 109.46845 * 240.00096 * 1 2 3 28 28 H 1.09004 * 109.46761 * 359.97438 * 1 2 3 29 29 H 1.08989 * 109.46835 * 120.00214 * 1 2 3 30 30 H 1.09003 * 109.46915 * 60.00378 * 4 2 1 31 31 H 1.08995 * 109.47201 * 299.99978 * 4 2 1 32 32 H 1.09003 * 109.46657 * 60.00550 * 5 4 2 33 33 H 1.09003 * 109.47358 * 300.01084 * 5 4 2 34 34 H 1.09007 * 109.46989 * 59.99991 * 6 5 4 35 35 H 1.09007 * 109.47143 * 300.00469 * 6 5 4 36 36 H 1.08999 * 109.47652 * 59.99909 * 7 6 5 37 37 H 1.09001 * 109.47451 * 299.99952 * 7 6 5 38 38 H 1.08994 * 109.46890 * 59.99842 * 8 7 6 39 39 H 1.09001 * 109.46706 * 300.00309 * 8 7 6 40 40 H 0.96998 * 119.99788 * 345.00004 * 9 8 7 41 41 H 1.08005 * 119.75337 * 0.03997 * 14 13 10 42 42 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 43 43 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 44 44 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.13007 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 -0.0002 6 6 4.5298 -2.3504 -0.0002 7 6 6.0340 -2.0709 -0.0004 8 6 6.7991 -3.3959 -0.0011 9 7 8.2394 -3.1282 -0.0018 10 16 9.3069 -4.3389 0.3686 11 8 8.8289 -4.9439 1.5622 12 8 10.6069 -3.7783 0.2480 13 6 9.1715 -5.5584 -0.8960 14 6 8.2595 -6.5941 -0.7620 15 6 8.1467 -7.5639 -1.7459 16 6 8.9329 -7.5019 -2.8740 17 6 9.8577 -6.4521 -3.0235 18 6 10.6710 -6.3783 -4.1777 19 1 11.6139 -5.8530 -4.1412 20 6 10.2542 -6.9861 -5.3673 21 7 8.9976 -7.3118 -5.5302 22 14 11.4920 -7.3323 -6.7229 23 1 12.5492 -8.2392 -6.2080 24 1 10.8028 -7.9758 -7.8701 25 1 12.1079 -6.0566 -7.1684 26 6 9.9677 -5.4763 -2.0153 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3632 -0.5138 -0.8899 30 1 1.9972 -1.8770 -0.8892 31 1 1.9972 -1.8762 0.8908 32 1 4.0284 -0.4534 0.8894 33 1 4.0278 -0.4543 -0.8906 34 1 4.2661 -2.9222 -0.8900 35 1 4.2669 -2.9219 0.8900 36 1 6.2975 -1.4993 0.8895 37 1 6.2973 -1.4993 -0.8904 38 1 6.5356 -3.9670 -0.8912 39 1 6.5359 -3.9678 0.8887 40 1 8.5678 -2.2418 -0.2192 41 1 7.6352 -6.6481 0.1177 42 1 7.4361 -8.3688 -1.6292 43 1 8.8405 -8.2562 -3.6414 44 1 8.7087 -7.7328 -6.3550 45 1 10.6748 -4.6667 -2.1194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000632415502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = -126.401939 kcal Electronic energy + Delta-G solvation = -26116.401386 eV Core-core repulsion = 22224.470521 eV Total energy + Delta-G solvation = -3891.930865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80888 -37.64797 -36.91130 -36.51243 -35.28338 -34.44947 -33.85598 -31.57465 -30.08665 -29.88768 -29.79032 -26.09386 -25.49514 -22.51651 -21.90375 -21.29425 -20.97340 -19.82110 -19.00235 -17.95151 -16.91842 -16.42889 -16.16787 -15.95147 -15.79948 -15.43234 -15.26904 -15.10593 -14.77578 -14.37297 -14.04860 -13.48638 -13.34981 -13.16453 -12.90992 -12.76375 -12.58562 -12.36314 -12.19361 -11.98424 -11.91371 -11.59935 -11.54202 -11.40564 -11.36901 -11.32605 -11.23887 -11.01711 -10.92995 -10.88269 -10.72285 -10.63215 -9.91599 -9.79990 -9.65861 -9.35631 -9.11934 -8.04708 -7.71682 -6.94219 -4.54723 1.05741 1.63234 2.19360 2.63069 2.98444 3.00786 3.07694 3.57367 3.71660 3.81669 4.25661 4.43053 4.52602 4.60736 4.66427 4.80426 4.91575 5.01192 5.03571 5.05724 5.21426 5.31301 5.38584 5.41196 5.48405 5.59583 5.70044 5.72056 5.82782 5.88841 6.03534 6.11093 6.16400 6.17630 6.28611 6.64827 6.75257 6.84301 7.01998 7.17898 7.19697 7.25846 7.37873 7.71679 7.79900 7.93363 8.39087 8.65696 8.70724 10.01161 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.002388 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.542870 B =11721.877051 C =13199.703715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.351 3.649 3 O -0.459 6.459 4 C -0.174 4.174 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.125 4.125 8 C 0.118 3.882 9 N -1.122 6.122 10 S 2.691 3.309 11 O -0.976 6.976 12 O -0.974 6.974 13 C -0.631 4.631 14 C -0.150 4.150 15 C -0.121 4.121 16 C -0.119 4.119 17 C 0.091 3.909 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.124 4.124 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.413 0.587 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.284 0.716 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 7.952 6.390 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.227 3.773 3 O -0.333 6.333 4 C -0.212 4.212 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.164 4.164 8 C -0.008 4.008 9 N -0.880 5.880 10 S 2.787 3.213 11 O -0.966 6.966 12 O -0.964 6.964 13 C -0.723 4.723 14 C -0.171 4.171 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.087 3.913 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.420 5.420 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.145 4.145 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.246 0.754 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.095 0.905 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.944 8.233 7.013 17.646 hybrid contribution 0.155 -0.307 -1.569 1.606 sum -13.789 7.926 5.444 16.811 Atomic orbital electron populations 1.22345 0.94675 1.04854 1.04551 1.24717 0.91954 0.90527 0.70122 1.90426 1.72070 1.35283 1.35501 1.22174 0.96878 0.97226 1.04878 1.21419 0.92535 0.97682 1.03327 1.21561 0.94232 0.97212 1.02820 1.21764 0.94619 0.97070 1.02994 1.21272 0.79063 0.97987 1.02484 1.55546 1.17287 1.26217 1.88949 1.01580 0.72218 0.73173 0.74365 1.93505 1.81388 1.77111 1.44645 1.93534 1.37123 1.78281 1.87512 1.29753 1.09845 1.16293 1.16414 1.20078 1.00521 0.97046 0.99441 1.20807 0.99919 0.98283 0.95010 1.21637 0.97623 0.98273 0.96381 1.17689 0.91751 0.89843 0.91969 1.19591 1.05229 1.30266 0.93853 0.89936 1.25938 0.95486 0.92975 0.99909 1.69776 1.15480 1.30010 1.26685 0.86294 0.81047 0.79857 0.79189 1.18665 1.20248 1.18817 1.20788 1.00002 0.99502 0.94224 0.89006 0.90206 0.88962 0.88223 0.88297 0.91422 0.91337 0.91243 0.91420 0.91223 0.91119 0.91294 0.90513 0.75361 0.87625 0.88409 0.85751 0.90538 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.90 10.26 36.01 0.37 -0.53 16 2 C 0.35 2.61 7.27 -29.03 -0.21 2.40 16 3 O -0.46 -5.38 16.71 6.00 0.10 -5.28 16 4 C -0.17 -1.03 5.64 -27.88 -0.16 -1.19 16 5 C -0.11 -0.90 4.50 -26.73 -0.12 -1.02 16 6 C -0.12 -0.98 5.21 -26.74 -0.14 -1.12 16 7 C -0.13 -1.23 5.36 -26.73 -0.14 -1.37 16 8 C 0.12 1.48 6.22 -4.04 -0.03 1.45 16 9 N -1.12 -16.03 6.00 -10.61 -0.06 -16.09 16 10 S 2.69 50.02 5.73 -107.50 -0.62 49.41 16 11 O -0.98 -19.70 16.74 -57.17 -0.96 -20.66 16 12 O -0.97 -20.45 17.26 -57.17 -0.99 -21.43 16 13 C -0.63 -13.64 5.94 -39.66 -0.24 -13.88 16 14 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 15 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 17 C 0.09 2.34 5.58 -106.82 -0.60 1.74 16 18 C -0.46 -11.76 9.05 -37.74 -0.34 -12.10 16 19 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.43 10.95 55.55 0.61 -18.82 16 22 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.09 0.26 8.14 -51.94 -0.42 -0.16 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 40 H 0.41 4.99 8.65 -34.47 -0.30 4.69 16 41 H 0.11 2.01 7.61 -52.48 -0.40 1.61 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.12 3.12 6.15 -52.49 -0.32 2.79 16 44 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 45 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -32.43 391.62 -11.07 -43.49 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.86 Total: 7.67 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -3.16 Total: -37.13 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.54 Total: -34.91 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -1.84 Total: -47.37 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 50.02 SS G_CDS: -0.62 Total: 49.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.43 -11.07 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632415502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.910 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds