Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20762 * 119.99809 * 2 1 4 4 C 1.50698 * 119.99996 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47103 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47366 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47329 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47385 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47488 * 179.97438 * 8 7 6 10 10 S 1.65599 * 120.00214 * 164.99885 * 9 8 7 11 11 O 1.42099 * 106.39938 * 311.46446 * 10 9 8 12 12 O 1.42092 * 106.40136 * 178.53974 * 10 9 8 13 13 C 1.76199 * 107.21588 * 64.99779 * 10 9 8 14 14 C 1.38649 * 119.87924 * 270.25539 * 13 10 9 15 15 C 1.38617 * 120.50384 * 180.30415 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87027 * 90.00133 * 13 10 9 27 27 H 1.09003 * 109.46845 * 240.00096 * 1 2 3 28 28 H 1.09004 * 109.46761 * 359.97438 * 1 2 3 29 29 H 1.08989 * 109.46835 * 120.00214 * 1 2 3 30 30 H 1.09003 * 109.46915 * 60.00378 * 4 2 1 31 31 H 1.08995 * 109.47201 * 299.99978 * 4 2 1 32 32 H 1.09003 * 109.46657 * 60.00550 * 5 4 2 33 33 H 1.09003 * 109.47358 * 300.01084 * 5 4 2 34 34 H 1.09007 * 109.46989 * 59.99991 * 6 5 4 35 35 H 1.09007 * 109.47143 * 300.00469 * 6 5 4 36 36 H 1.08999 * 109.47652 * 59.99909 * 7 6 5 37 37 H 1.09001 * 109.47451 * 299.99952 * 7 6 5 38 38 H 1.08994 * 109.46890 * 59.99842 * 8 7 6 39 39 H 1.09001 * 109.46706 * 300.00309 * 8 7 6 40 40 H 0.96998 * 119.99788 * 345.00004 * 9 8 7 41 41 H 1.08005 * 119.75337 * 0.03997 * 14 13 10 42 42 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 43 43 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 44 44 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.13007 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 -0.0002 6 6 4.5298 -2.3504 -0.0002 7 6 6.0340 -2.0709 -0.0004 8 6 6.7991 -3.3959 -0.0011 9 7 8.2394 -3.1282 -0.0018 10 16 9.3069 -4.3389 0.3686 11 8 8.8289 -4.9439 1.5622 12 8 10.6069 -3.7783 0.2480 13 6 9.1715 -5.5584 -0.8960 14 6 8.2595 -6.5941 -0.7620 15 6 8.1467 -7.5639 -1.7459 16 6 8.9329 -7.5019 -2.8740 17 6 9.8577 -6.4521 -3.0235 18 6 10.6710 -6.3783 -4.1777 19 1 11.6139 -5.8530 -4.1412 20 6 10.2542 -6.9861 -5.3673 21 7 8.9976 -7.3118 -5.5302 22 14 11.4920 -7.3323 -6.7229 23 1 12.5492 -8.2392 -6.2080 24 1 10.8028 -7.9758 -7.8701 25 1 12.1079 -6.0566 -7.1684 26 6 9.9677 -5.4763 -2.0153 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3632 -0.5138 -0.8899 30 1 1.9972 -1.8770 -0.8892 31 1 1.9972 -1.8762 0.8908 32 1 4.0284 -0.4534 0.8894 33 1 4.0278 -0.4543 -0.8906 34 1 4.2661 -2.9222 -0.8900 35 1 4.2669 -2.9219 0.8900 36 1 6.2975 -1.4993 0.8895 37 1 6.2973 -1.4993 -0.8904 38 1 6.5356 -3.9670 -0.8912 39 1 6.5359 -3.9678 0.8887 40 1 8.5678 -2.2418 -0.2192 41 1 7.6352 -6.6481 0.1177 42 1 7.4361 -8.3688 -1.6292 43 1 8.8405 -8.2562 -3.6414 44 1 8.7087 -7.7328 -6.3550 45 1 10.6748 -4.6667 -2.1194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000632415502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = -146.901603 kcal Electronic energy + Delta-G solvation = -26117.290318 eV Core-core repulsion = 22224.470521 eV Total energy + Delta-G solvation = -3892.819797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44194 -39.43736 -38.29926 -37.62644 -36.89151 -35.66877 -35.31977 -32.23956 -31.90627 -31.57368 -30.49087 -27.34836 -26.84094 -23.67959 -23.33180 -22.76810 -22.01211 -20.55700 -20.34463 -19.59530 -18.38058 -17.72652 -17.30719 -17.06085 -16.80664 -16.60036 -16.53087 -16.07520 -15.94319 -15.76577 -15.22280 -15.04297 -14.79359 -14.29610 -14.02030 -13.72655 -13.47510 -13.36329 -13.28972 -13.15024 -13.07593 -13.05185 -13.02321 -12.91037 -12.81497 -12.80412 -12.58781 -12.22520 -12.04493 -11.93101 -11.84459 -11.56079 -11.40615 -11.30714 -11.13885 -10.51589 -10.38706 -9.83901 -9.55551 -8.73447 -6.45043 -0.46019 0.41691 0.85360 1.08706 1.36857 1.45945 1.49584 2.16873 2.17312 2.56221 2.80572 3.20420 3.48279 3.53898 3.92471 3.97631 4.04980 4.20541 4.29762 4.32428 4.46173 4.46706 4.52660 4.66461 4.71348 4.76679 4.78155 4.85468 4.91223 4.94513 5.03063 5.03258 5.08669 5.10051 5.20680 5.28427 5.31791 5.41878 5.45149 5.53350 5.57572 5.89476 5.94393 6.10693 6.14441 6.52849 6.65181 6.79692 6.85044 8.24209 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.002388 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.542870 B =11721.877051 C =13199.703715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.350 3.650 3 O -0.513 6.513 4 C -0.173 4.173 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.122 4.122 8 C 0.110 3.890 9 N -1.108 6.108 10 S 2.722 3.278 11 O -0.986 6.986 12 O -0.999 6.999 13 C -0.638 4.638 14 C -0.146 4.146 15 C -0.122 4.122 16 C -0.142 4.142 17 C 0.061 3.939 18 C -0.499 4.499 19 H 0.077 0.923 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.261 1.261 26 C -0.147 4.147 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.425 0.575 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.292 0.708 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 7.504 6.895 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.230 3.770 3 O -0.391 6.391 4 C -0.209 4.209 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.161 4.161 8 C -0.016 4.016 9 N -0.870 5.870 10 S 2.814 3.186 11 O -0.976 6.976 12 O -0.989 6.989 13 C -0.727 4.727 14 C -0.167 4.167 15 C -0.141 4.141 16 C -0.162 4.162 17 C 0.058 3.942 18 C -0.528 4.528 19 H 0.095 0.905 20 C -0.178 4.178 21 N -0.445 5.445 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.188 1.188 25 H -0.185 1.185 26 C -0.168 4.168 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.261 0.739 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.707 7.753 7.505 19.056 hybrid contribution 0.583 -0.129 -1.603 1.711 sum -15.124 7.624 5.902 17.935 Atomic orbital electron populations 1.22363 0.92200 1.04907 1.06545 1.25328 0.93499 0.90220 0.67950 1.90419 1.73273 1.37036 1.38358 1.22228 0.94989 0.96868 1.06861 1.21358 0.94320 0.97224 1.01969 1.21536 0.92808 0.97331 1.03656 1.21760 0.95480 0.95553 1.03312 1.21530 0.77783 0.99653 1.02617 1.55223 1.17716 1.25562 1.88524 1.00691 0.71862 0.72763 0.73263 1.93488 1.81610 1.77832 1.44631 1.93496 1.39329 1.78484 1.87590 1.30258 1.08698 1.17439 1.16262 1.20487 1.00127 0.96144 0.99917 1.21158 0.99615 0.99190 0.94114 1.21656 0.98806 0.98289 0.97422 1.18053 0.92579 0.90779 0.92824 1.19818 1.05607 1.32286 0.95108 0.90499 1.26719 0.97212 0.92147 1.01681 1.69805 1.16827 1.30178 1.27720 0.85252 0.78469 0.79658 0.76397 1.18643 1.18796 1.18480 1.20854 1.01120 0.99576 0.95255 0.86719 0.91219 0.86943 0.86344 0.85909 0.92574 0.93060 0.90831 0.90109 0.90632 0.91205 0.91731 0.89831 0.73879 0.84761 0.85356 0.86871 0.89702 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 10.26 71.24 0.73 -0.60 16 2 C 0.35 4.79 7.27 29.10 0.21 5.00 16 3 O -0.51 -12.19 16.71 -1.46 -0.02 -12.21 16 4 C -0.17 -1.64 5.64 29.85 0.17 -1.48 16 5 C -0.11 -1.65 4.50 30.59 0.14 -1.51 16 6 C -0.12 -1.62 5.21 30.59 0.16 -1.46 16 7 C -0.12 -2.16 5.36 30.59 0.16 -2.00 16 8 C 0.11 2.52 6.22 86.38 0.54 3.06 16 9 N -1.11 -29.96 6.00 -187.48 -1.12 -31.08 16 10 S 2.72 98.13 5.73 -56.49 -0.32 97.81 16 11 O -0.99 -37.76 16.74 -128.00 -2.14 -39.91 16 12 O -1.00 -41.54 17.26 -128.00 -2.21 -43.75 16 13 C -0.64 -27.30 5.94 22.22 0.13 -27.16 16 14 C -0.15 -6.00 9.53 22.46 0.21 -5.79 16 15 C -0.12 -5.27 10.02 22.22 0.22 -5.05 16 16 C -0.14 -7.13 8.70 22.73 0.20 -6.93 16 17 C 0.06 3.23 5.58 -21.29 -0.12 3.11 16 18 C -0.50 -26.46 9.05 23.46 0.21 -26.25 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 20 C 0.04 1.86 5.14 85.25 0.44 2.30 16 21 N -0.82 -40.69 10.95 21.83 0.24 -40.46 16 22 Si 0.98 37.07 29.60 68.60 2.03 39.10 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 26 C -0.15 -7.21 9.26 22.73 0.21 -7.00 16 27 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 28 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.95 8.10 -2.39 -0.02 0.94 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.84 7.75 -2.39 -0.02 1.82 16 40 H 0.42 9.66 8.65 -96.75 -0.84 8.82 16 41 H 0.13 4.70 7.61 -2.91 -0.02 4.68 16 42 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 43 H 0.11 5.83 6.15 -2.91 -0.02 5.81 16 44 H 0.29 13.03 8.30 -92.70 -0.77 12.26 16 45 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -71.69 391.62 0.22 -71.48 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.15 Total: 30.78 kcal Atomic # 6 Polarization: -75.37 SS G_CDS: 3.62 Total: -71.75 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -0.89 Total: -71.54 kcal Atomic # 8 Polarization: -91.49 SS G_CDS: -4.38 Total: -95.87 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 16 Polarization: 98.13 SS G_CDS: -0.32 Total: 97.81 kcal Total: -71.69 0.22 -71.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000632415502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.424 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds