Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 O 1.45203 * 109.47334 * 119.99695 * 2 1 3 5 5 C 1.34227 * 116.99924 * 270.00248 * 4 2 1 6 6 O 1.20820 * 120.00380 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99749 * 180.02562 * 5 4 2 8 8 O 1.42899 * 109.47442 * 179.97438 * 7 5 4 9 9 C 1.35957 * 117.00290 * 179.97438 * 8 7 5 10 10 C 1.38659 * 120.06290 * 359.97438 * 9 8 7 11 11 C 1.38181 * 119.96883 * 179.97438 * 10 9 8 12 12 C 1.38264 * 120.09501 * 0.02562 * 11 10 9 13 13 C 1.38250 * 120.12372 * 0.02562 * 12 11 10 14 14 C 1.38329 * 120.03622 * 359.70380 * 13 12 11 15 15 F 1.35103 * 120.05558 * 180.27849 * 14 13 12 16 16 C 1.50704 * 109.47206 * 240.00015 * 2 1 3 17 17 O 1.21277 * 119.99609 * 256.02174 * 16 2 1 18 18 N 1.34770 * 119.99988 * 76.02693 * 16 2 1 19 19 C 1.46505 * 120.00163 * 5.36190 * 18 16 2 20 20 C 1.46492 * 119.99995 * 185.36709 * 18 16 2 21 21 C 1.50706 * 109.47383 * 89.99778 * 20 18 16 22 22 H 1.08003 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00132 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47048 * 89.99817 * 25 23 21 27 27 H 1.48495 * 109.47289 * 209.99515 * 25 23 21 28 28 H 1.48496 * 109.47033 * 329.99860 * 25 23 21 29 29 H 1.09004 * 109.46600 * 186.14251 * 1 2 3 30 30 H 1.08992 * 109.47503 * 66.14137 * 1 2 3 31 31 H 1.09002 * 109.47301 * 306.13413 * 1 2 3 32 32 H 1.08999 * 109.47335 * 299.99964 * 7 5 4 33 33 H 1.09000 * 109.47617 * 59.99719 * 7 5 4 34 34 H 1.08005 * 120.01329 * 359.95620 * 10 9 8 35 35 H 1.08003 * 119.95276 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.93615 * 179.97438 * 12 11 10 37 37 H 1.08011 * 119.98317 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47126 * 84.82548 * 19 18 16 39 39 H 1.08997 * 109.47350 * 204.82954 * 19 18 16 40 40 H 1.09000 * 109.46993 * 324.82627 * 19 18 16 41 41 H 1.09007 * 109.47186 * 209.99873 * 20 18 16 42 42 H 1.09000 * 109.47111 * 329.99601 * 20 18 16 43 43 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7194 -0.5769 3.5491 8 8 2.8549 0.4189 4.5650 9 6 3.3005 0.0040 5.7806 10 6 3.6004 -1.3333 5.9911 11 6 4.0537 -1.7528 7.2272 12 6 4.2082 -0.8410 8.2550 13 6 3.9093 0.4931 8.0497 14 6 3.4605 0.9198 6.8128 15 9 3.1738 2.2244 6.6102 16 6 2.0323 -0.7104 -1.2305 17 8 2.4736 -1.8366 -1.1427 18 7 1.9913 -0.0942 -2.4283 19 6 1.5689 1.3058 -2.5178 20 6 2.3688 -0.8243 -3.6410 21 6 1.1505 -1.4919 -4.2252 22 1 0.1909 -1.3828 -3.7418 23 6 1.2610 -2.2419 -5.3769 24 7 2.4295 -2.3742 -5.9658 25 14 -0.2489 -3.0700 -6.1007 26 1 -0.9069 -2.1477 -7.0607 27 1 0.1580 -4.3114 -6.8067 28 1 -1.1980 -3.4091 -5.0102 29 1 -0.3633 -1.0218 0.1100 30 1 -0.3634 0.4156 -0.9398 31 1 -0.3634 0.6060 0.8300 32 1 2.0106 -1.3371 3.8774 33 1 3.6885 -1.0398 3.3632 34 1 3.4794 -2.0468 5.1893 35 1 4.2875 -2.7945 7.3907 36 1 4.5623 -1.1718 9.2202 37 1 4.0313 1.2035 8.8541 38 1 2.4228 1.9558 -2.3268 39 1 1.1773 1.5042 -3.5155 40 1 0.7924 1.4991 -1.7777 41 1 2.7861 -0.1284 -4.3689 42 1 3.1136 -1.5804 -3.3928 43 1 2.5072 -2.9016 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728984820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = -161.036424 kcal Electronic energy + Delta-G solvation = -28545.895336 eV Core-core repulsion = 24086.249431 eV Total energy + Delta-G solvation = -4459.645905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.07831 -41.06195 -40.27098 -38.99492 -37.87863 -36.44601 -34.94677 -32.90498 -31.87315 -31.17902 -30.78636 -28.84215 -27.82101 -26.12050 -24.61133 -23.58939 -22.96871 -22.50213 -20.96474 -19.14826 -18.90086 -17.90462 -17.56405 -17.17831 -17.00945 -16.65115 -16.49481 -16.04615 -15.83347 -15.45387 -15.27245 -15.12775 -14.83034 -14.64324 -14.36325 -13.78464 -13.61387 -13.25422 -13.06752 -12.92890 -12.70112 -12.40633 -12.22725 -12.18413 -12.11790 -11.81021 -11.66610 -11.65952 -11.49329 -11.27491 -10.96990 -10.82589 -10.66073 -10.59335 -10.21660 -9.70380 -9.43007 -8.99189 -8.68949 -8.49266 -7.77773 -6.10156 -4.15699 0.65046 0.76727 1.68137 1.92766 2.98875 3.10332 3.16415 3.26570 3.33612 3.37841 3.75921 3.82208 4.22839 4.30151 4.38835 4.47389 4.52093 4.57057 4.74102 4.75811 4.77733 4.96174 4.99961 5.03410 5.24427 5.46531 5.47885 5.56759 5.60908 5.66040 5.69771 5.82914 5.90373 6.03256 6.11626 6.19373 6.24502 6.72517 6.93481 7.34842 7.40985 7.52741 7.85476 8.14892 8.23044 8.77629 8.93050 9.49515 10.97906 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.001974 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.476259 B =14178.666710 C =14672.643884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.105 0.895 4 O -0.321 6.321 5 C 0.463 3.537 6 O -0.485 6.485 7 C 0.069 3.931 8 O -0.287 6.287 9 C 0.098 3.902 10 C -0.183 4.183 11 C -0.088 4.088 12 C -0.128 4.128 13 C -0.117 4.117 14 C 0.074 3.926 15 F -0.129 7.129 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.595 5.595 19 C 0.072 3.928 20 C 0.245 3.755 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.900 3.100 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 4.928 26.500 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.237 6.237 5 C 0.304 3.696 6 O -0.371 6.371 7 C -0.007 4.007 8 O -0.200 6.200 9 C 0.052 3.948 10 C -0.201 4.201 11 C -0.106 4.106 12 C -0.146 4.146 13 C -0.136 4.136 14 C 0.054 3.946 15 F -0.108 7.108 16 C 0.295 3.705 17 O -0.396 6.396 18 N -0.328 5.328 19 C -0.071 4.071 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.770 4.849 26.220 26.723 hybrid contribution -0.913 -0.243 -0.678 1.163 sum 0.857 4.606 25.542 25.968 Atomic orbital electron populations 1.22180 0.91831 1.04283 1.04024 1.22763 0.96230 0.97483 0.82092 0.87714 1.86563 1.76654 1.41170 1.19324 1.22801 0.75517 0.85983 0.85337 1.90711 1.46417 1.16132 1.83820 1.21933 1.04274 0.90211 0.84325 1.86139 1.81064 1.35080 1.17719 1.19017 0.97963 0.92974 0.84850 1.21283 1.05175 0.93658 1.00027 1.21067 0.97198 1.00359 0.91978 1.20986 1.01571 0.92096 0.99981 1.21063 0.99942 0.97572 0.94989 1.17012 1.06242 0.78095 0.93234 1.91538 1.91364 1.32412 1.95467 1.19702 0.80275 0.86823 0.83743 1.90695 1.45226 1.18370 1.85317 1.48080 1.65151 1.11952 1.07664 1.21854 0.99069 0.82585 1.03635 1.19385 0.96728 0.92090 0.79115 1.21417 0.94754 1.31499 1.09233 0.92335 1.24946 0.96290 0.96126 0.96741 1.69934 1.23170 1.40425 1.19626 0.86472 0.82718 0.79004 0.79087 1.20595 1.21041 1.19868 0.90490 0.89240 0.91142 0.87062 0.86976 0.83977 0.84701 0.84673 0.83887 0.93317 0.89974 0.92221 0.94565 0.93530 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.19 37.16 0.34 -1.97 16 2 C 0.07 1.19 2.14 -27.88 -0.06 1.13 16 3 H 0.11 1.59 6.31 -51.93 -0.33 1.26 16 4 O -0.32 -5.09 9.47 -45.74 -0.43 -5.52 16 5 C 0.46 6.44 8.01 36.01 0.29 6.73 16 6 O -0.48 -7.98 15.72 -25.47 -0.40 -8.38 16 7 C 0.07 0.68 5.33 36.01 0.19 0.87 16 8 O -0.29 -3.48 9.53 -39.56 -0.38 -3.86 16 9 C 0.10 0.99 6.69 -39.18 -0.26 0.73 16 10 C -0.18 -1.32 9.04 -39.45 -0.36 -1.68 16 11 C -0.09 -0.50 10.04 -39.59 -0.40 -0.90 16 12 C -0.13 -0.71 10.04 -39.57 -0.40 -1.11 16 13 C -0.12 -0.83 10.02 -39.54 -0.40 -1.23 16 14 C 0.07 0.76 7.31 -39.30 -0.29 0.47 16 15 F -0.13 -1.60 17.11 2.25 0.04 -1.56 16 16 C 0.51 10.73 6.95 -10.99 -0.08 10.65 16 17 O -0.52 -13.14 16.13 -13.54 -0.22 -13.36 16 18 N -0.59 -12.47 2.86 -182.95 -0.52 -12.99 16 19 C 0.07 1.13 9.79 59.85 0.59 1.71 16 20 C 0.25 6.31 5.18 -5.20 -0.03 6.28 16 21 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 22 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 25 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 0.78 7.66 -51.93 -0.40 0.38 16 33 H 0.11 0.85 7.67 -51.93 -0.40 0.46 16 34 H 0.14 0.74 6.30 -52.48 -0.33 0.41 16 35 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 36 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 37 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.06 0.78 4.92 -51.93 -0.26 0.52 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -35.99 376.90 -7.13 -43.12 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.34 Total: -2.48 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -1.27 Total: 8.31 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.21 Total: -38.38 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.43 Total: -31.12 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.99 -7.13 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728984820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.915 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds