Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47048 * 2 1 4 4 O 1.45196 * 109.47259 * 239.99960 * 2 1 3 5 5 C 1.34225 * 116.99960 * 90.00124 * 4 2 1 6 6 O 1.20822 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99728 * 179.97438 * 5 4 2 8 8 O 1.42906 * 109.47037 * 180.02562 * 7 5 4 9 9 C 1.35948 * 117.00016 * 180.02562 * 8 7 5 10 10 C 1.38659 * 120.06296 * 359.97438 * 9 8 7 11 11 C 1.38182 * 119.96723 * 180.02562 * 10 9 8 12 12 C 1.38257 * 120.10006 * 359.97438 * 11 10 9 13 13 C 1.38255 * 120.12507 * 0.02562 * 12 11 10 14 14 C 1.38338 * 120.03035 * 359.97438 * 13 12 11 15 15 F 1.35094 * 120.05046 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46877 * 119.99793 * 2 1 3 17 17 O 1.21281 * 119.99745 * 120.00179 * 16 2 1 18 18 N 1.34777 * 120.00010 * 300.00491 * 16 2 1 19 19 C 1.46496 * 120.00241 * 359.97438 * 18 16 2 20 20 C 1.46502 * 120.00083 * 180.02562 * 18 16 2 21 21 C 1.50705 * 109.47135 * 89.99580 * 20 18 16 22 22 H 1.08005 * 119.99976 * 0.02562 * 21 20 18 23 23 C 1.37876 * 119.99778 * 180.02562 * 21 20 18 24 24 N 1.31509 * 120.00318 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99717 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47094 * 60.00107 * 25 23 21 27 27 H 1.48505 * 109.46877 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47325 * 299.99983 * 25 23 21 29 29 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08989 * 109.47542 * 299.99992 * 1 2 3 31 31 H 1.09002 * 109.46911 * 60.00416 * 1 2 3 32 32 H 1.08994 * 109.47324 * 60.00401 * 7 5 4 33 33 H 1.08998 * 109.47294 * 299.99941 * 7 5 4 34 34 H 1.07992 * 120.01857 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.94945 * 180.02562 * 11 10 9 36 36 H 1.08001 * 119.94370 * 180.02562 * 12 11 10 37 37 H 1.07994 * 119.98956 * 179.72600 * 13 12 11 38 38 H 1.09006 * 109.46865 * 90.00287 * 19 18 16 39 39 H 1.09000 * 109.47582 * 210.00464 * 19 18 16 40 40 H 1.09006 * 109.47115 * 330.00543 * 19 18 16 41 41 H 1.08996 * 109.47682 * 209.99870 * 20 18 16 42 42 H 1.09000 * 109.46715 * 330.00123 * 20 18 16 43 43 H 0.97004 * 120.00310 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2810 6 8 1.9983 1.2518 -2.2503 7 6 2.7195 -0.5771 -3.5491 8 8 2.8550 0.4188 -4.5650 9 6 3.3006 0.0038 -5.7805 10 6 3.6014 -1.3334 -5.9906 11 6 4.0547 -1.7529 -7.2267 12 6 4.2083 -0.8414 -8.2548 13 6 3.9096 0.4928 -8.0497 14 6 3.4554 0.9186 -6.8143 15 9 3.1639 2.2223 -6.6133 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6965 1.1192 18 7 1.7066 -0.2499 2.4546 19 6 0.8648 0.9414 2.5890 20 6 2.1953 -0.9402 3.6508 21 6 3.5227 -0.3561 4.0608 22 1 3.9585 0.4491 3.4878 23 6 4.1808 -0.8496 5.1673 24 7 3.6505 -1.8303 5.8647 25 14 5.8265 -0.1260 5.6750 26 1 5.6613 1.3197 5.9710 27 1 6.3224 -0.8265 6.8869 28 1 6.8042 -0.2967 4.5703 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.0107 -1.3373 -3.8773 33 1 3.6886 -1.0400 -3.3630 34 1 3.4816 -2.0466 -5.1886 35 1 4.2886 -2.7946 -7.3902 36 1 4.5624 -1.1721 -9.2201 37 1 4.0346 1.2037 -8.8531 38 1 -0.1833 0.6438 2.6221 39 1 1.1226 1.4667 3.5086 40 1 1.0286 1.6002 1.7361 41 1 1.4775 -0.8151 4.4614 42 1 2.3169 -2.0014 3.4337 43 1 4.1133 -2.1773 6.6434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728984821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -156.998926 kcal Electronic energy + Delta-G solvation = -28596.068457 eV Core-core repulsion = 24136.597631 eV Total energy + Delta-G solvation = -4459.470826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.06223 -41.04869 -40.26305 -39.01692 -37.86226 -36.42459 -35.01326 -32.98971 -31.81593 -31.16296 -30.77414 -28.84749 -27.68368 -26.29319 -24.55302 -23.57514 -22.95252 -22.49566 -20.97185 -19.14000 -18.94601 -17.90432 -17.55462 -17.15257 -17.00591 -16.56879 -16.53321 -16.04717 -15.78542 -15.45034 -15.29901 -15.18434 -14.81358 -14.61447 -14.28907 -13.76850 -13.65671 -13.27513 -13.11071 -12.93816 -12.72877 -12.46625 -12.25608 -12.17025 -12.14706 -11.76318 -11.64921 -11.59387 -11.44356 -11.18923 -10.96847 -10.80631 -10.63540 -10.58727 -10.20386 -9.70817 -9.41346 -8.98842 -8.67171 -8.47744 -7.78720 -6.09076 -4.14291 0.66638 0.78422 1.69678 1.95443 3.00464 3.11957 3.18759 3.30152 3.34356 3.38440 3.75829 3.83625 4.23885 4.31591 4.40780 4.48026 4.52393 4.59967 4.75697 4.76474 4.77347 4.91144 5.01540 5.02779 5.25539 5.43815 5.48360 5.58317 5.58679 5.59973 5.71294 5.78982 5.91855 5.93346 6.13254 6.18040 6.25020 6.74370 6.92889 7.33814 7.40649 7.54506 7.86454 8.16006 8.22760 8.78632 8.93835 9.50869 10.98977 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002140 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.993291 B =13082.498729 C =13684.997475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.321 6.321 5 C 0.464 3.536 6 O -0.485 6.485 7 C 0.069 3.931 8 O -0.287 6.287 9 C 0.098 3.902 10 C -0.183 4.183 11 C -0.088 4.088 12 C -0.128 4.128 13 C -0.117 4.117 14 C 0.074 3.926 15 F -0.129 7.129 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.594 5.594 19 C 0.075 3.925 20 C 0.247 3.753 21 C -0.531 4.531 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 1.927 -25.931 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.014 3.986 3 H 0.126 0.874 4 O -0.236 6.236 5 C 0.304 3.696 6 O -0.371 6.371 7 C -0.007 4.007 8 O -0.200 6.200 9 C 0.052 3.948 10 C -0.201 4.201 11 C -0.106 4.106 12 C -0.146 4.146 13 C -0.136 4.136 14 C 0.054 3.946 15 F -0.108 7.108 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.328 5.328 19 C -0.069 4.069 20 C 0.129 3.871 21 C -0.569 4.569 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.524 1.882 -25.658 26.122 hybrid contribution 0.862 0.616 0.518 1.179 sum -3.662 2.498 -25.141 25.529 Atomic orbital electron populations 1.22419 0.92181 1.04235 1.04521 1.22700 0.95835 0.97789 0.82284 0.87376 1.86537 1.76721 1.41124 1.19249 1.22786 0.75488 0.85986 0.85300 1.90713 1.46409 1.16113 1.83823 1.21931 1.04313 0.90172 0.84295 1.86140 1.81047 1.35087 1.17717 1.19018 0.97958 0.92988 0.84819 1.21280 1.05193 0.93660 1.00014 1.21063 0.97209 1.00358 0.91978 1.20982 1.01599 0.92096 0.99971 1.21063 0.99900 0.97570 0.95036 1.17015 1.06196 0.78144 0.93231 1.91536 1.91253 1.32495 1.95490 1.19715 0.81758 0.85408 0.83786 1.90707 1.36964 1.26009 1.85854 1.48062 1.49761 1.28345 1.06611 1.21906 0.93975 0.88001 1.03036 1.19363 0.94390 0.93744 0.79647 1.21382 1.04876 1.19249 1.11426 0.92464 1.24929 0.98000 0.94908 0.96186 1.69915 1.39108 1.25884 1.18338 0.86540 0.83776 0.79073 0.77937 1.20193 1.21108 1.20147 0.90854 0.88654 0.91246 0.87114 0.86904 0.83983 0.84707 0.84680 0.83892 0.92922 0.90212 0.92248 0.94524 0.93604 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.18 37.16 0.34 -1.87 16 2 C 0.07 1.17 2.18 -27.88 -0.06 1.11 16 3 H 0.11 1.72 6.41 -51.93 -0.33 1.39 16 4 O -0.32 -5.12 9.41 -45.89 -0.43 -5.55 16 5 C 0.46 6.63 8.01 36.01 0.29 6.92 16 6 O -0.48 -8.22 15.72 -25.47 -0.40 -8.62 16 7 C 0.07 0.71 5.33 36.01 0.19 0.90 16 8 O -0.29 -3.59 9.53 -39.53 -0.38 -3.97 16 9 C 0.10 1.03 6.69 -39.18 -0.26 0.76 16 10 C -0.18 -1.37 9.04 -39.45 -0.36 -1.73 16 11 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 12 C -0.13 -0.74 10.04 -39.57 -0.40 -1.14 16 13 C -0.12 -0.86 10.02 -39.54 -0.40 -1.26 16 14 C 0.07 0.78 7.31 -39.29 -0.29 0.49 16 15 F -0.13 -1.64 17.11 2.25 0.04 -1.60 16 16 C 0.51 10.69 7.15 -10.98 -0.08 10.61 16 17 O -0.52 -13.19 16.08 -14.10 -0.23 -13.42 16 18 N -0.59 -12.36 2.86 -182.95 -0.52 -12.88 16 19 C 0.07 1.13 8.80 59.84 0.53 1.66 16 20 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 21 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 22 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 25 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.06 4.53 -51.94 -0.24 0.82 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 0.78 7.66 -51.93 -0.40 0.38 16 33 H 0.11 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 35 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.05 0.66 6.95 -51.93 -0.36 0.29 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -36.50 374.34 -7.15 -43.65 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.25 Total: -2.78 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.34 Total: 8.27 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.21 Total: -38.38 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.44 Total: -31.56 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.50 -7.15 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728984821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.354 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds