Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46676 * 2 1 4 4 O 1.45193 * 109.47235 * 239.99931 * 2 1 3 5 5 C 1.34232 * 116.99942 * 89.99948 * 4 2 1 6 6 O 1.20820 * 119.99983 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99880 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47094 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47210 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 7 11 11 C 1.33391 * 125.19937 * 90.00083 * 10 9 8 12 12 C 1.38423 * 114.92045 * 179.97438 * 11 10 9 13 13 C 1.33390 * 114.91979 * 359.97438 * 12 11 10 14 14 S 1.75878 * 125.20693 * 269.69344 * 10 9 8 15 15 C 1.50700 * 109.47117 * 119.99501 * 2 1 3 16 16 O 1.21278 * 119.99733 * 120.00314 * 15 2 1 17 17 N 1.34778 * 120.00392 * 300.00188 * 15 2 1 18 18 C 1.46497 * 119.99702 * 0.02562 * 17 15 2 19 19 C 1.46497 * 120.00102 * 179.97438 * 17 15 2 20 20 C 1.50705 * 109.46805 * 90.00316 * 19 17 15 21 21 H 1.07997 * 119.99857 * 0.02562 * 20 19 17 22 22 C 1.37869 * 119.99916 * 179.97438 * 20 19 17 23 23 N 1.31519 * 120.00262 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47348 * 90.00033 * 24 22 20 26 26 H 1.48500 * 109.47059 * 210.00229 * 24 22 20 27 27 H 1.48503 * 109.46663 * 329.99839 * 24 22 20 28 28 H 1.09005 * 109.46609 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47180 * 299.99676 * 1 2 3 30 30 H 1.08998 * 109.46934 * 60.00433 * 1 2 3 31 31 H 1.08997 * 109.47561 * 59.99834 * 7 5 4 32 32 H 1.09000 * 109.46976 * 299.99528 * 7 5 4 33 33 H 1.09000 * 109.47531 * 59.99538 * 8 7 5 34 34 H 1.09008 * 109.47250 * 300.00113 * 8 7 5 35 35 H 1.09000 * 109.46884 * 60.00289 * 9 8 7 36 36 H 1.09000 * 109.46955 * 299.99604 * 9 8 7 37 37 H 1.07995 * 122.54106 * 359.95411 * 11 10 9 38 38 H 1.08001 * 122.53959 * 180.02562 * 12 11 10 39 39 H 1.07998 * 125.20163 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.47586 * 89.99886 * 18 17 15 41 41 H 1.08997 * 109.47035 * 209.99970 * 18 17 15 42 42 H 1.09004 * 109.47203 * 329.99152 * 18 17 15 43 43 H 1.08993 * 109.47420 * 210.00303 * 19 17 15 44 44 H 1.08994 * 109.47196 * 330.00857 * 19 17 15 45 45 H 0.96994 * 120.00117 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9974 1.2517 -2.2506 7 6 2.7183 -0.5772 -3.5494 8 6 2.8624 0.4888 -4.6374 9 6 3.3718 -0.1621 -5.9249 10 6 3.5131 0.8879 -6.9968 11 6 4.6129 1.6060 -7.2293 12 6 4.5079 2.5132 -8.2696 13 6 3.3231 2.5313 -8.8821 14 16 2.2559 1.3483 -8.1372 15 6 2.0324 -0.7103 1.2305 16 8 2.7297 -1.6963 1.1193 17 7 1.7068 -0.2498 2.4546 18 6 0.8641 0.9409 2.5890 19 6 2.1947 -0.9407 3.6508 20 6 3.5224 -0.3576 4.0612 21 1 3.9588 0.4474 3.4885 22 6 4.1794 -0.8510 5.1683 23 7 3.6472 -1.8303 5.8666 24 14 5.8248 -0.1278 5.6774 25 1 5.6005 0.9973 6.6203 26 1 6.6415 -1.1751 6.3418 27 1 6.5403 0.3691 4.4748 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0089 -1.3369 -3.8774 32 1 3.6872 -1.0408 -3.3639 33 1 3.5716 1.2489 -4.3097 34 1 1.8933 0.9521 -4.8228 35 1 2.6628 -0.9223 -6.2528 36 1 4.3410 -0.6250 -5.7392 37 1 5.5166 1.4889 -6.6497 38 1 5.3238 3.1569 -8.5635 39 1 3.0607 3.1717 -9.7113 40 1 -0.1838 0.6427 2.6225 41 1 1.1218 1.4666 3.5084 42 1 1.0273 1.5997 1.7360 43 1 1.4767 -0.8152 4.4612 44 1 2.3156 -2.0019 3.4336 45 1 4.1096 -2.1777 6.6452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729527338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -113.033202 kcal Electronic energy + Delta-G solvation = -26153.372930 eV Core-core repulsion = 22262.021777 eV Total energy + Delta-G solvation = -3891.351153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93412 -40.58074 -38.92070 -37.77335 -36.74043 -35.79222 -34.93259 -33.09753 -31.50511 -29.57879 -28.02400 -27.69201 -26.00400 -25.06718 -24.05028 -22.83453 -21.51793 -20.45869 -20.14028 -19.09660 -18.68447 -18.18647 -17.86691 -17.56659 -17.28259 -16.72880 -16.49946 -16.25569 -15.95900 -15.57712 -14.85005 -14.75006 -14.57848 -14.29172 -14.17696 -13.84514 -13.72447 -13.61528 -13.51079 -13.37500 -13.32443 -13.00990 -12.83292 -12.82095 -12.60039 -12.54739 -12.44324 -12.40438 -12.22304 -11.92038 -11.77101 -11.73879 -11.61267 -11.51030 -10.65712 -10.62829 -9.53981 -9.53133 -9.37465 -8.24839 -6.39457 0.09853 0.75087 1.10031 1.11903 1.34232 1.36146 1.38576 1.48664 1.61011 1.86752 2.31889 2.44316 3.04962 3.39270 3.54663 3.65973 3.78848 3.84674 3.98391 4.19327 4.27806 4.29544 4.35867 4.46149 4.55838 4.61385 4.61808 4.67891 4.70324 4.73656 4.86334 4.88950 4.94869 5.05249 5.09317 5.18683 5.25969 5.29504 5.38918 5.42795 5.50103 5.62545 5.76880 6.02142 6.53126 6.67205 6.69187 7.19141 7.34621 8.82360 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.001892 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.321128 B =14793.746326 C =15623.751523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.111 0.889 4 O -0.346 6.346 5 C 0.457 3.543 6 O -0.533 6.533 7 C -0.108 4.108 8 C -0.095 4.095 9 C -0.046 4.046 10 C -0.180 4.180 11 C -0.153 4.153 12 C -0.144 4.144 13 C -0.222 4.222 14 S 0.080 5.920 15 C 0.499 3.501 16 O -0.579 6.579 17 N -0.599 5.599 18 C 0.068 3.932 19 C 0.259 3.741 20 C -0.547 4.547 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.925 5.925 24 Si 0.967 3.033 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.276 1.276 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.034 0.966 44 H 0.002 0.998 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 8.310 -28.095 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.262 6.262 5 C 0.302 3.698 6 O -0.423 6.423 7 C -0.145 4.145 8 C -0.133 4.133 9 C -0.085 4.085 10 C -0.297 4.297 11 C -0.183 4.183 12 C -0.174 4.174 13 C -0.357 4.357 14 S 0.343 5.657 15 C 0.286 3.714 16 O -0.459 6.459 17 N -0.332 5.332 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.069 0.931 22 C -0.190 4.190 23 N -0.564 5.564 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.198 0.802 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.624 7.602 -28.206 29.954 hybrid contribution 2.344 0.757 0.982 2.652 sum -4.280 8.359 -27.224 28.799 Atomic orbital electron populations 1.22396 0.89326 1.04511 1.06052 1.22474 0.97804 0.96546 0.81144 0.87097 1.86631 1.76929 1.42499 1.20104 1.24686 0.73386 0.85851 0.85916 1.90630 1.49359 1.17628 1.84640 1.21574 1.05562 1.00329 0.87022 1.21350 1.02442 0.96880 0.92617 1.20179 1.04164 0.94405 0.89722 1.24687 0.97104 1.04941 1.02981 1.20436 0.99798 0.97974 1.00138 1.20459 0.98685 1.01098 0.97182 1.25905 0.97468 1.05394 1.06953 1.84327 1.17562 1.35486 1.28345 1.20694 0.80662 0.84851 0.85216 1.90658 1.39598 1.28737 1.86894 1.48041 1.50112 1.29544 1.05455 1.22236 0.94736 0.86317 1.04071 1.18853 0.93962 0.91837 0.81485 1.21678 1.06016 1.19262 1.11584 0.93073 1.25835 1.01770 0.95225 0.96184 1.70037 1.40652 1.27008 1.18726 0.85421 0.78731 0.78399 0.78288 1.18698 1.20457 1.20060 0.91260 0.87137 0.89493 0.84766 0.85778 0.91948 0.91613 0.88947 0.88087 0.83360 0.82748 0.80191 0.89577 0.90683 0.89449 0.94822 0.98010 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.18 71.98 0.66 -3.27 16 2 C 0.08 2.55 2.18 29.85 0.07 2.62 16 3 H 0.11 3.46 6.42 -2.39 -0.02 3.44 16 4 O -0.35 -11.25 9.41 -45.08 -0.42 -11.67 16 5 C 0.46 12.11 7.93 71.24 0.56 12.68 16 6 O -0.53 -16.11 15.20 21.98 0.33 -15.78 16 7 C -0.11 -1.77 5.81 29.85 0.17 -1.59 16 8 C -0.09 -1.48 4.49 30.59 0.14 -1.35 16 9 C -0.05 -0.54 5.71 29.85 0.17 -0.37 16 10 C -0.18 -2.70 5.76 24.59 0.14 -2.56 16 11 C -0.15 -2.29 10.05 21.22 0.21 -2.07 16 12 C -0.14 -1.97 10.18 21.22 0.22 -1.75 16 13 C -0.22 -2.94 11.23 66.72 0.75 -2.19 16 14 S 0.08 1.17 23.33 -56.49 -1.32 -0.15 16 15 C 0.50 21.78 7.15 87.66 0.63 22.41 16 16 O -0.58 -31.44 16.08 15.78 0.25 -31.18 16 17 N -0.60 -25.56 2.86 -851.16 -2.43 -27.99 16 18 C 0.07 1.98 8.80 127.77 1.12 3.11 16 19 C 0.26 13.95 5.16 85.64 0.44 14.40 16 20 C -0.55 -31.66 9.39 25.60 0.24 -31.42 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.01 0.53 5.46 84.65 0.46 0.99 16 23 N -0.92 -55.58 13.29 21.45 0.28 -55.30 16 24 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.11 2.18 4.53 -2.39 -0.01 2.17 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.07 1.16 8.10 -2.38 -0.02 1.14 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.09 1.95 6.95 -2.39 -0.02 1.93 16 41 H 0.07 2.26 8.07 -2.39 -0.02 2.25 16 42 H 0.09 2.06 6.01 -2.38 -0.01 2.05 16 43 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 44 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 45 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -79.39 392.32 5.70 -73.69 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.99 Total: 11.71 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.99 Total: 9.63 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.15 Total: -83.29 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: 0.16 Total: -58.63 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.32 Total: -0.15 kcal Total: -79.39 5.70 -73.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729527338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.342 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds