Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 5 5 C 1.34235 * 116.99927 * 90.00371 * 4 2 1 6 6 O 1.20821 * 120.00047 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00318 * 180.02562 * 5 4 2 8 8 O 1.42894 * 109.47318 * 179.97438 * 7 5 4 9 9 C 1.35948 * 116.99971 * 179.97438 * 8 7 5 10 10 C 1.38705 * 120.03038 * 359.72296 * 9 8 7 11 11 C 1.38152 * 119.97040 * 179.79371 * 10 9 8 12 12 C 1.38458 * 120.02805 * 0.47772 * 11 10 9 13 13 F 1.35100 * 119.96689 * 179.72260 * 12 11 10 14 14 C 1.38447 * 120.05963 * 359.75518 * 12 11 10 15 15 C 1.38145 * 120.03212 * 0.02562 * 14 12 11 16 16 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 17 17 O 1.21280 * 119.99888 * 115.00096 * 16 2 1 18 18 N 1.34777 * 119.99928 * 295.00204 * 16 2 1 19 19 C 1.46496 * 119.99889 * 359.97438 * 18 16 2 20 20 C 1.46500 * 119.99779 * 179.97438 * 18 16 2 21 21 C 1.50694 * 109.46954 * 89.99836 * 20 18 16 22 22 H 1.08003 * 120.00102 * 0.02562 * 21 20 18 23 23 C 1.37878 * 119.99994 * 179.97438 * 21 20 18 24 24 N 1.31509 * 120.00205 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00154 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46987 * 90.00313 * 25 23 21 27 27 H 1.48498 * 109.47209 * 210.00317 * 25 23 21 28 28 H 1.48500 * 109.47126 * 330.00657 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09005 * 109.47034 * 299.99883 * 7 5 4 33 33 H 1.09002 * 109.47151 * 59.99000 * 7 5 4 34 34 H 1.08002 * 120.01466 * 0.02562 * 10 9 8 35 35 H 1.07999 * 119.98593 * 180.21348 * 11 10 9 36 36 H 1.08006 * 119.98524 * 179.97438 * 14 12 11 37 37 H 1.08005 * 120.01947 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.47373 * 90.00178 * 19 18 16 39 39 H 1.09005 * 109.46584 * 209.99714 * 19 18 16 40 40 H 1.08999 * 109.47384 * 329.99408 * 19 18 16 41 41 H 1.08993 * 109.47001 * 209.99914 * 20 18 16 42 42 H 1.09002 * 109.47216 * 330.00108 * 20 18 16 43 43 H 0.97004 * 120.00789 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9975 1.2517 -2.2506 7 6 2.7184 -0.5772 -3.5494 8 8 2.8531 0.4184 -4.5655 9 6 3.2986 0.0035 -5.7810 10 6 3.6051 -1.3332 -5.9887 11 6 4.0538 -1.7543 -7.2257 12 6 4.2069 -0.8409 -8.2549 13 9 4.6511 -1.2531 -9.4624 14 6 3.9059 0.4944 -8.0475 15 6 3.4528 0.9174 -6.8130 16 6 2.0323 -0.7104 1.2306 17 8 2.6530 -1.7466 1.1216 18 7 1.7919 -0.1941 2.4521 19 6 1.0426 1.0579 2.5836 20 6 2.2797 -0.8849 3.6483 21 6 3.6613 -0.3877 3.9871 22 1 4.1290 0.3678 3.3731 23 6 4.3279 -0.8963 5.0817 24 7 3.7582 -1.8158 5.8296 25 14 6.0402 -0.2794 5.5022 26 1 5.9359 0.8845 6.4185 27 1 6.8082 -1.3639 6.1649 28 1 6.7378 0.1317 4.2573 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 3.6873 -1.0409 -3.3639 33 1 2.0089 -1.3370 -3.8774 34 1 3.4895 -2.0452 -5.1849 35 1 4.2892 -2.7956 -7.3886 36 1 4.0262 1.2060 -8.8511 37 1 3.2185 1.9593 -6.6513 38 1 -0.0215 0.8374 2.6677 39 1 1.3754 1.5884 3.4758 40 1 1.2166 1.6795 1.7052 41 1 1.6071 -0.6858 4.4825 42 1 2.3160 -1.9578 3.4589 43 1 4.2273 -2.1740 6.5995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729539886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -182.089468 kcal Electronic energy + Delta-G solvation = -28283.248815 eV Core-core repulsion = 23822.689982 eV Total energy + Delta-G solvation = -4460.558834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.83904 -42.12876 -41.19754 -40.45718 -38.41690 -37.56892 -36.71384 -34.92009 -33.19918 -32.33928 -31.09431 -29.71526 -29.29082 -27.66086 -26.04346 -24.75253 -24.06217 -23.31104 -22.07859 -20.48011 -19.73469 -18.98449 -18.67545 -18.51783 -18.16294 -17.92625 -17.64163 -17.26345 -16.72532 -16.69613 -16.47175 -16.27505 -15.82292 -15.69699 -15.07027 -14.83830 -14.68202 -14.48881 -14.25315 -14.10233 -13.99334 -13.75958 -13.54808 -13.43336 -13.41207 -13.30505 -13.03665 -12.83388 -12.63168 -12.52727 -12.23151 -12.06746 -12.00813 -11.99980 -11.73207 -11.63170 -10.65388 -10.64567 -10.21478 -9.53095 -9.21010 -8.24593 -6.38960 0.12208 0.14984 0.75036 0.91650 1.36216 1.38828 1.48709 1.60093 2.05974 2.36640 2.51926 2.52513 3.05435 3.28254 3.33269 3.38185 3.66019 3.74723 3.77638 3.80599 3.93691 3.96026 4.14685 4.28538 4.32298 4.48932 4.54668 4.61095 4.67876 4.86753 4.88820 4.94405 5.09089 5.09422 5.11537 5.15111 5.16152 5.21818 5.49900 5.60972 5.76730 6.02491 6.13730 6.43372 6.59610 6.69672 7.18683 7.34647 8.82529 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002012 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.663612 B =13914.336945 C =14825.121825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.116 0.884 4 O -0.335 6.335 5 C 0.464 3.536 6 O -0.514 6.514 7 C 0.070 3.930 8 O -0.311 6.311 9 C 0.108 3.892 10 C -0.180 4.180 11 C -0.112 4.112 12 C 0.043 3.957 13 F -0.149 7.149 14 C -0.111 4.111 15 C -0.126 4.126 16 C 0.500 3.500 17 O -0.577 6.577 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.260 3.740 21 C -0.546 4.546 22 H 0.051 0.949 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.966 3.034 26 H -0.263 1.263 27 H -0.280 1.280 28 H -0.275 1.275 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.034 0.966 42 H 0.003 0.997 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 5.185 -25.341 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.133 0.867 4 O -0.251 6.251 5 C 0.307 3.693 6 O -0.401 6.401 7 C -0.006 4.006 8 O -0.225 6.225 9 C 0.063 3.937 10 C -0.198 4.198 11 C -0.131 4.131 12 C 0.024 3.976 13 F -0.128 7.128 14 C -0.129 4.129 15 C -0.145 4.145 16 C 0.287 3.713 17 O -0.456 6.456 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.139 3.861 21 C -0.585 4.585 22 H 0.070 0.930 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.791 3.209 26 H -0.188 1.188 27 H -0.205 1.205 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.169 0.831 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.653 5.087 -25.142 26.267 hybrid contribution 1.083 -0.125 0.528 1.211 sum -4.570 4.961 -24.614 25.522 Atomic orbital electron populations 1.22307 0.88986 1.04683 1.06000 1.22588 0.97975 0.96699 0.80455 0.86656 1.86552 1.77028 1.41847 1.19695 1.23577 0.74391 0.85687 0.85640 1.90681 1.47902 1.17300 1.84247 1.22117 1.05969 0.90051 0.82417 1.86049 1.81639 1.36112 1.18698 1.19204 0.96267 0.93684 0.84540 1.21430 1.04331 0.94755 0.99312 1.21209 0.99295 1.01017 0.91579 1.17875 1.04117 0.93965 0.81664 1.91481 1.87411 1.91051 1.42845 1.21167 0.99117 0.94530 0.98116 1.20486 1.02808 1.00633 0.90523 1.20600 0.80181 0.85450 0.85113 1.90667 1.42210 1.26023 1.86728 1.48046 1.54053 1.25308 1.05671 1.22204 0.96566 0.84527 1.04102 1.18854 0.93826 0.91890 0.81532 1.21678 1.02228 1.23102 1.11465 0.93038 1.25821 1.02303 0.94952 0.95909 1.70030 1.39840 1.28893 1.17656 0.85437 0.78887 0.78344 0.78270 1.18794 1.20523 1.20020 0.90988 0.89269 0.87369 0.85084 0.83849 0.81907 0.82465 0.82059 0.83109 0.89609 0.90706 0.89464 0.94839 0.97879 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.27 71.98 0.67 -2.88 16 2 C 0.08 2.45 2.16 29.85 0.06 2.51 16 3 H 0.12 3.32 6.14 -2.39 -0.01 3.31 16 4 O -0.34 -10.03 9.42 -45.12 -0.43 -10.46 16 5 C 0.46 11.81 8.01 71.24 0.57 12.38 16 6 O -0.51 -15.54 15.72 28.41 0.45 -15.10 16 7 C 0.07 1.16 5.33 71.24 0.38 1.54 16 8 O -0.31 -6.19 9.67 -73.89 -0.71 -6.90 16 9 C 0.11 1.77 6.69 22.49 0.15 1.92 16 10 C -0.18 -2.31 9.04 22.36 0.20 -2.11 16 11 C -0.11 -1.46 10.02 22.30 0.22 -1.24 16 12 C 0.04 0.66 7.30 22.37 0.16 0.82 16 13 F -0.15 -2.58 17.27 44.97 0.78 -1.80 16 14 C -0.11 -1.47 10.02 22.30 0.22 -1.25 16 15 C -0.13 -1.87 9.98 22.36 0.22 -1.64 16 16 C 0.50 20.80 7.10 87.66 0.62 21.43 16 17 O -0.58 -29.98 16.09 15.72 0.25 -29.73 16 18 N -0.60 -24.63 2.86 -851.14 -2.43 -27.06 16 19 C 0.07 1.89 8.92 127.77 1.14 3.03 16 20 C 0.26 13.64 5.16 85.63 0.44 14.09 16 21 C -0.55 -31.06 9.39 25.60 0.24 -30.82 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.01 0.55 5.46 84.66 0.46 1.01 16 24 N -0.92 -54.93 13.29 21.45 0.28 -54.65 16 25 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 26 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.96 5.12 -2.38 -0.01 1.94 16 32 H 0.13 1.70 7.65 -2.38 -0.02 1.68 16 33 H 0.14 1.42 7.67 -2.39 -0.02 1.40 16 34 H 0.16 1.30 6.30 -2.91 -0.02 1.28 16 35 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.09 1.84 7.02 -2.39 -0.02 1.82 16 39 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 40 H 0.09 1.95 6.08 -2.39 -0.01 1.94 16 41 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 42 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -79.49 375.13 7.04 -72.45 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.05 Total: 7.94 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.77 Total: 18.79 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.15 Total: -81.71 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -0.44 Total: -62.19 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -79.49 7.04 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729539886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.642 kcal (2) G-P(sol) polarization free energy of solvation -79.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds