Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81407 * 109.46926 * 2 1 4 4 O 1.42096 * 108.57795 * 65.51628 * 3 2 1 5 5 O 1.42100 * 108.57872 * 294.48960 * 3 2 1 6 6 C 1.81404 * 101.91996 * 180.02562 * 3 2 1 7 7 C 1.50701 * 109.47124 * 179.97438 * 6 3 2 8 8 O 1.21291 * 119.99463 * 0.02562 * 7 6 3 9 9 N 1.34768 * 119.99884 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99629 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47004 * 269.99649 * 10 9 7 12 12 H 1.08001 * 120.00366 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00221 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99726 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00272 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46956 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47208 * 119.99993 * 15 13 11 18 18 H 1.48501 * 109.47470 * 240.00245 * 15 13 11 19 19 C 1.39926 * 120.00394 * 359.97438 * 9 7 6 20 20 C 1.38896 * 120.07192 * 270.00291 * 19 9 7 21 21 C 1.38089 * 119.92836 * 179.97438 * 20 19 9 22 22 C 1.38301 * 120.07154 * 0.26163 * 21 20 19 23 23 C 1.38265 * 120.14089 * 359.48342 * 22 21 20 24 24 C 1.50696 * 119.96735 * 180.25880 * 23 22 21 25 25 C 1.38136 * 120.06884 * 0.50983 * 23 22 21 26 26 C 1.50705 * 120.03559 * 179.76571 * 25 23 22 27 27 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47109 * 299.99261 * 1 2 3 29 29 H 1.08998 * 109.47839 * 59.99821 * 1 2 3 30 30 H 1.08994 * 109.47243 * 240.00493 * 2 1 3 31 31 H 1.08998 * 109.47589 * 119.99691 * 2 1 3 32 32 H 1.09003 * 109.47048 * 60.00049 * 6 3 2 33 33 H 1.08997 * 109.47317 * 300.00277 * 6 3 2 34 34 H 1.08995 * 109.47722 * 29.99678 * 10 9 7 35 35 H 1.08999 * 109.47185 * 149.99795 * 10 9 7 36 36 H 0.97001 * 119.99558 * 180.02562 * 14 13 11 37 37 H 1.07999 * 120.03506 * 359.95652 * 20 19 9 38 38 H 1.08002 * 119.96096 * 179.97438 * 21 20 19 39 39 H 1.07991 * 119.93139 * 179.74706 * 22 21 20 40 40 H 1.08998 * 109.47556 * 270.25514 * 24 23 22 41 41 H 1.09005 * 109.47311 * 30.25507 * 24 23 22 42 42 H 1.09000 * 109.47542 * 150.25006 * 24 23 22 43 43 H 1.09001 * 109.47268 * 269.98345 * 26 25 23 44 44 H 1.09003 * 109.46927 * 29.98305 * 26 25 23 45 45 H 1.09002 * 109.46956 * 149.98548 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7591 2.3233 -1.2258 6 6 3.9329 1.4720 -0.0008 7 6 4.6176 2.8145 -0.0015 8 8 3.9572 3.8319 -0.0010 9 7 5.9634 2.8846 -0.0027 10 6 6.6289 4.1897 -0.0028 11 6 6.8559 4.6376 -1.4237 12 1 6.5368 4.0125 -2.2445 13 6 7.4720 5.8451 -1.6758 14 7 7.8619 6.6056 -0.6763 15 14 7.7540 6.4000 -3.4370 16 1 7.2278 5.3717 -4.3703 17 1 7.0488 7.6861 -3.6697 18 1 9.2088 6.5837 -3.6713 19 6 6.7251 1.7108 -0.0027 20 6 7.1050 1.1276 1.1993 21 6 7.8563 -0.0310 1.1958 22 6 8.2351 -0.6078 -0.0028 23 6 7.8541 -0.0326 -1.2010 24 6 8.2641 -0.6675 -2.5048 25 6 7.1024 1.1263 -1.2044 26 6 6.6921 1.7555 -2.5109 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2252 0.9150 -0.8910 33 1 4.2260 0.9147 0.8889 34 1 6.0017 4.9175 0.5117 35 1 7.5873 4.1089 0.5101 36 1 8.2950 7.4553 -0.8537 37 1 6.8134 1.5800 2.1356 38 1 8.1523 -0.4847 2.1301 39 1 8.8260 -1.5116 -0.0029 40 1 9.2251 -0.2616 -2.8203 41 1 8.3512 -1.7460 -2.3722 42 1 7.5125 -0.4546 -3.2649 43 1 7.4552 2.4666 -2.8273 44 1 6.5817 0.9799 -3.2688 45 1 5.7426 2.2751 -2.3815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732094224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -75.201978 kcal Electronic energy + Delta-G solvation = -28628.034553 eV Core-core repulsion = 24738.323885 eV Total energy + Delta-G solvation = -3889.710668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29784 -38.55820 -36.82148 -35.85953 -35.25117 -33.33254 -33.31022 -32.72935 -30.56566 -30.45443 -27.80005 -26.71438 -25.97864 -24.28269 -22.91434 -22.26169 -20.68901 -19.07483 -18.63780 -17.32171 -16.82663 -16.77922 -16.24411 -15.91194 -15.72563 -15.52854 -15.01320 -14.76731 -14.23168 -14.16193 -13.96089 -13.85360 -13.38236 -12.99417 -12.82466 -12.78184 -12.69064 -12.49719 -12.40052 -12.11036 -11.87242 -11.83675 -11.80397 -11.75253 -11.60952 -11.47881 -11.08260 -10.97759 -10.91154 -10.78373 -10.65163 -10.46105 -10.15307 -9.71826 -9.52497 -8.49622 -8.41646 -8.28897 -8.03002 -6.08073 -4.11970 -0.07254 1.43281 1.52022 2.80332 2.94832 3.28200 3.35909 3.37240 3.42918 3.81999 3.89421 4.00647 4.40821 4.44450 4.52473 4.58347 4.92641 4.96431 4.97237 5.03186 5.16920 5.23842 5.27728 5.29640 5.38686 5.41260 5.43481 5.60985 5.68687 5.69918 5.80410 5.99200 6.03415 6.12236 6.22871 6.53219 6.63545 6.65795 6.83249 6.89496 7.13819 7.24550 7.39238 7.87893 8.12801 8.14775 8.61889 8.91193 9.52331 11.01075 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.005137 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.438227 B = 5449.853404 C = 7176.610154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.625 4.625 3 S 2.449 3.551 4 O -0.922 6.922 5 O -0.918 6.918 6 C -0.656 4.656 7 C 0.542 3.458 8 O -0.518 6.518 9 N -0.546 5.546 10 C 0.247 3.753 11 C -0.535 4.535 12 H 0.074 0.926 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.284 1.284 19 C 0.149 3.851 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.086 4.086 24 C -0.115 4.115 25 C -0.068 4.068 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -20.967 1.111 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.753 4.753 3 S 2.626 3.374 4 O -0.919 6.919 5 O -0.915 6.915 6 C -0.785 4.785 7 C 0.327 3.673 8 O -0.395 6.395 9 N -0.275 5.275 10 C 0.129 3.871 11 C -0.573 4.573 12 H 0.092 0.908 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.210 1.210 19 C 0.058 3.942 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.087 4.087 24 C -0.172 4.172 25 C -0.070 4.070 26 C -0.177 4.177 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.122 -19.413 1.154 20.110 hybrid contribution 1.113 -0.499 -0.781 1.448 sum -4.009 -19.912 0.374 20.315 Atomic orbital electron populations 1.21502 0.90317 1.04649 1.03949 1.30371 1.07626 1.25896 1.11431 1.07515 0.76728 0.77229 0.75929 1.93566 1.80158 1.72329 1.45826 1.93581 1.80071 1.72211 1.45674 1.30874 1.27727 1.07029 1.12848 1.18851 0.83135 0.87541 0.77799 1.90850 1.63230 1.35730 1.49679 1.45719 1.03839 1.07286 1.70610 1.19546 0.92567 0.76451 0.98497 1.21690 1.38846 1.04521 0.92248 0.90837 1.24920 0.95456 0.96177 0.97378 1.69943 1.40329 1.12185 1.30707 0.86479 0.77633 0.79002 0.84573 1.19607 1.20771 1.21019 1.17526 0.96385 0.87966 0.92340 1.21386 0.99390 0.96145 0.97535 1.20904 0.98999 0.95985 0.97905 1.20954 1.00716 1.00332 0.91924 1.19640 0.98386 0.95217 0.95466 1.20837 1.02021 0.99763 0.94539 1.20078 0.97141 0.94238 0.95516 1.21098 1.03545 1.00160 0.92899 0.90178 0.90744 0.90704 0.85004 0.85045 0.82939 0.82937 0.93052 0.94520 0.92723 0.85814 0.86036 0.86307 0.91096 0.91934 0.91083 0.89037 0.92227 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.92 37.16 0.37 -0.83 16 2 C -0.63 -5.10 6.53 37.16 0.24 -4.86 16 3 S 2.45 35.31 3.96 -107.50 -0.43 34.88 16 4 O -0.92 -16.53 17.95 -59.52 -1.07 -17.60 16 5 O -0.92 -16.89 17.94 -59.54 -1.07 -17.96 16 6 C -0.66 -9.24 5.10 36.01 0.18 -9.05 16 7 C 0.54 11.33 7.00 -10.99 -0.08 11.25 16 8 O -0.52 -13.21 15.20 2.54 0.04 -13.17 16 9 N -0.55 -11.56 1.66 -114.74 -0.19 -11.75 16 10 C 0.25 6.39 5.15 -5.19 -0.03 6.36 16 11 C -0.53 -14.63 8.75 -34.44 -0.30 -14.93 16 12 H 0.07 1.93 4.33 -52.49 -0.23 1.70 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C 0.15 2.60 3.90 -83.69 -0.33 2.28 16 20 C -0.13 -1.85 9.97 -39.39 -0.39 -2.24 16 21 C -0.12 -1.44 10.04 -39.61 -0.40 -1.84 16 22 C -0.12 -1.41 9.70 -39.55 -0.38 -1.80 16 23 C -0.09 -1.13 5.88 -104.65 -0.62 -1.74 16 24 C -0.12 -1.17 9.60 36.00 0.35 -0.83 16 25 C -0.07 -1.09 5.90 -104.43 -0.62 -1.71 16 26 C -0.12 -2.01 7.71 36.01 0.28 -1.73 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.15 1.71 8.10 -51.92 -0.42 1.28 16 33 H 0.15 1.58 8.10 -51.93 -0.42 1.16 16 34 H 0.05 1.49 7.42 -51.93 -0.39 1.11 16 35 H 0.04 0.98 8.05 -51.93 -0.42 0.56 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.07 0.69 5.94 -51.93 -0.31 0.39 16 43 H 0.09 1.71 7.04 -51.93 -0.37 1.35 16 44 H 0.06 0.78 5.95 -51.93 -0.31 0.47 16 45 H 0.07 1.35 6.04 -51.93 -0.31 1.03 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -37.81 381.83 -9.59 -47.40 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.53 Total: 1.44 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -1.82 Total: -20.00 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.55 Total: -37.34 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -2.10 Total: -48.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 35.31 SS G_CDS: -0.43 Total: 34.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.81 -9.59 -47.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.806 kcal (2) G-P(sol) polarization free energy of solvation -37.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds