Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81407 * 109.46926 * 2 1 4 4 O 1.42096 * 108.57795 * 65.51628 * 3 2 1 5 5 O 1.42100 * 108.57872 * 294.48960 * 3 2 1 6 6 C 1.81404 * 101.91996 * 180.02562 * 3 2 1 7 7 C 1.50701 * 109.47124 * 179.97438 * 6 3 2 8 8 O 1.21291 * 119.99463 * 0.02562 * 7 6 3 9 9 N 1.34768 * 119.99884 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99629 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47004 * 269.99649 * 10 9 7 12 12 H 1.08001 * 120.00366 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00221 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99726 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00272 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46956 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47208 * 119.99993 * 15 13 11 18 18 H 1.48501 * 109.47470 * 240.00245 * 15 13 11 19 19 C 1.39926 * 120.00394 * 359.97438 * 9 7 6 20 20 C 1.38896 * 120.07192 * 270.00291 * 19 9 7 21 21 C 1.38089 * 119.92836 * 179.97438 * 20 19 9 22 22 C 1.38301 * 120.07154 * 0.26163 * 21 20 19 23 23 C 1.38265 * 120.14089 * 359.48342 * 22 21 20 24 24 C 1.50696 * 119.96735 * 180.25880 * 23 22 21 25 25 C 1.38136 * 120.06884 * 0.50983 * 23 22 21 26 26 C 1.50705 * 120.03559 * 179.76571 * 25 23 22 27 27 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47109 * 299.99261 * 1 2 3 29 29 H 1.08998 * 109.47839 * 59.99821 * 1 2 3 30 30 H 1.08994 * 109.47243 * 240.00493 * 2 1 3 31 31 H 1.08998 * 109.47589 * 119.99691 * 2 1 3 32 32 H 1.09003 * 109.47048 * 60.00049 * 6 3 2 33 33 H 1.08997 * 109.47317 * 300.00277 * 6 3 2 34 34 H 1.08995 * 109.47722 * 29.99678 * 10 9 7 35 35 H 1.08999 * 109.47185 * 149.99795 * 10 9 7 36 36 H 0.97001 * 119.99558 * 180.02562 * 14 13 11 37 37 H 1.07999 * 120.03506 * 359.95652 * 20 19 9 38 38 H 1.08002 * 119.96096 * 179.97438 * 21 20 19 39 39 H 1.07991 * 119.93139 * 179.74706 * 22 21 20 40 40 H 1.08998 * 109.47556 * 270.25514 * 24 23 22 41 41 H 1.09005 * 109.47311 * 30.25507 * 24 23 22 42 42 H 1.09000 * 109.47542 * 150.25006 * 24 23 22 43 43 H 1.09001 * 109.47268 * 269.98345 * 26 25 23 44 44 H 1.09003 * 109.46927 * 29.98305 * 26 25 23 45 45 H 1.09002 * 109.46956 * 149.98548 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7591 2.3233 -1.2258 6 6 3.9329 1.4720 -0.0008 7 6 4.6176 2.8145 -0.0015 8 8 3.9572 3.8319 -0.0010 9 7 5.9634 2.8846 -0.0027 10 6 6.6289 4.1897 -0.0028 11 6 6.8559 4.6376 -1.4237 12 1 6.5368 4.0125 -2.2445 13 6 7.4720 5.8451 -1.6758 14 7 7.8619 6.6056 -0.6763 15 14 7.7540 6.4000 -3.4370 16 1 7.2278 5.3717 -4.3703 17 1 7.0488 7.6861 -3.6697 18 1 9.2088 6.5837 -3.6713 19 6 6.7251 1.7108 -0.0027 20 6 7.1050 1.1276 1.1993 21 6 7.8563 -0.0310 1.1958 22 6 8.2351 -0.6078 -0.0028 23 6 7.8541 -0.0326 -1.2010 24 6 8.2641 -0.6675 -2.5048 25 6 7.1024 1.1263 -1.2044 26 6 6.6921 1.7555 -2.5109 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2252 0.9150 -0.8910 33 1 4.2260 0.9147 0.8889 34 1 6.0017 4.9175 0.5117 35 1 7.5873 4.1089 0.5101 36 1 8.2950 7.4553 -0.8537 37 1 6.8134 1.5800 2.1356 38 1 8.1523 -0.4847 2.1301 39 1 8.8260 -1.5116 -0.0029 40 1 9.2251 -0.2616 -2.8203 41 1 8.3512 -1.7460 -2.3722 42 1 7.5125 -0.4546 -3.2649 43 1 7.4552 2.4666 -2.8273 44 1 6.5817 0.9799 -3.2688 45 1 5.7426 2.2751 -2.3815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732094224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -102.447326 kcal Electronic energy + Delta-G solvation = -28629.216000 eV Core-core repulsion = 24738.323885 eV Total energy + Delta-G solvation = -3890.892115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70138 -39.93444 -38.04458 -37.09453 -36.81837 -34.93228 -34.23410 -34.01956 -32.00751 -31.68793 -29.41505 -27.96896 -27.16059 -25.31299 -24.67415 -23.53317 -21.74373 -20.47428 -19.80947 -18.81682 -18.60036 -18.08747 -17.45261 -17.22938 -16.89920 -16.83522 -16.53480 -15.90736 -15.86270 -15.19445 -15.17230 -14.94929 -14.55156 -14.39973 -14.00672 -13.86123 -13.73377 -13.63730 -13.54330 -13.45458 -13.39681 -13.13704 -13.09490 -13.05110 -12.76204 -12.74957 -12.67196 -12.36243 -12.17779 -12.08380 -12.03531 -11.92957 -11.50833 -11.38606 -11.23446 -10.67936 -9.81351 -9.51135 -9.44094 -8.25819 -6.37610 -1.12655 0.32380 0.45921 1.31490 1.35098 1.39289 1.47054 1.76137 1.95670 2.35690 2.71525 2.80264 3.00727 3.06076 3.33475 3.74270 3.78881 3.95120 3.99820 4.02190 4.16808 4.19853 4.30532 4.43659 4.45814 4.61482 4.70837 4.74927 4.80514 4.83549 4.89386 4.95045 5.00612 5.02447 5.08115 5.14565 5.22612 5.43728 5.45444 5.56297 5.60936 5.73629 5.77308 6.00284 6.07060 6.47518 6.70531 7.05955 7.32150 8.83725 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.005137 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.438227 B = 5449.853404 C = 7176.610154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.573 4.573 3 S 2.420 3.580 4 O -0.977 6.977 5 O -0.978 6.978 6 C -0.642 4.642 7 C 0.524 3.476 8 O -0.584 6.584 9 N -0.546 5.546 10 C 0.262 3.738 11 C -0.543 4.543 12 H 0.080 0.920 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.260 1.260 17 H -0.285 1.285 18 H -0.269 1.269 19 C 0.110 3.890 20 C -0.136 4.136 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.081 4.081 24 C -0.115 4.115 25 C -0.087 4.087 26 C -0.116 4.116 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.173 0.827 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.002 0.998 35 H 0.020 0.980 36 H 0.265 0.735 37 H 0.119 0.881 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -26.912 0.172 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.707 4.707 3 S 2.604 3.396 4 O -0.974 6.974 5 O -0.975 6.975 6 C -0.769 4.769 7 C 0.312 3.688 8 O -0.465 6.465 9 N -0.272 5.272 10 C 0.142 3.858 11 C -0.581 4.581 12 H 0.098 0.902 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.786 3.214 16 H -0.183 1.183 17 H -0.211 1.211 18 H -0.194 1.194 19 C 0.021 3.979 20 C -0.156 4.156 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.082 4.082 24 C -0.171 4.171 25 C -0.088 4.088 26 C -0.172 4.172 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.190 0.810 31 H 0.193 0.807 32 H 0.202 0.798 33 H 0.210 0.790 34 H 0.020 0.980 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.984 -25.350 0.216 25.662 hybrid contribution 0.786 1.155 -0.412 1.456 sum -3.198 -24.195 -0.197 24.407 Atomic orbital electron populations 1.21763 0.90092 1.06842 1.03533 1.30011 1.07348 1.17686 1.15641 1.08065 0.76661 0.80890 0.73971 1.93492 1.80642 1.76233 1.47012 1.93502 1.80655 1.76237 1.47111 1.30784 1.26849 1.03099 1.16208 1.19969 0.82927 0.89651 0.76207 1.90805 1.64571 1.38795 1.52379 1.45491 1.04497 1.07047 1.70146 1.18928 0.90921 0.78621 0.97289 1.22049 1.38187 1.04816 0.93026 0.90168 1.25860 0.95276 0.96313 1.01765 1.70079 1.41375 1.12675 1.33018 0.85449 0.78160 0.78322 0.79493 1.18349 1.21091 1.19449 1.17838 0.98391 0.87370 0.94322 1.21466 1.00331 0.97454 0.96310 1.21287 0.96879 0.94286 0.99892 1.21435 0.99347 1.00932 0.90801 1.19985 0.96788 0.93773 0.97659 1.20915 1.01908 1.01423 0.92895 1.20089 0.98813 0.95792 0.94145 1.20964 1.00856 1.00487 0.94891 0.86233 0.91357 0.91480 0.80953 0.80750 0.79772 0.78980 0.97960 0.96243 0.92573 0.86261 0.82536 0.82258 0.91043 0.88840 0.90861 0.91989 0.88520 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.92 71.98 0.71 -1.43 16 2 C -0.57 -6.82 6.53 71.98 0.47 -6.35 16 3 S 2.42 70.94 3.96 -56.49 -0.22 70.72 16 4 O -0.98 -37.28 17.95 -125.76 -2.26 -39.54 16 5 O -0.98 -38.31 17.94 -125.73 -2.26 -40.57 16 6 C -0.64 -17.86 5.10 71.24 0.36 -17.50 16 7 C 0.52 23.49 7.00 87.66 0.61 24.10 16 8 O -0.58 -32.94 15.20 -0.18 0.00 -32.95 16 9 N -0.55 -24.62 1.66 -635.32 -1.06 -25.67 16 10 C 0.26 14.83 5.15 85.63 0.44 15.27 16 11 C -0.54 -31.65 8.75 25.60 0.22 -31.43 16 12 H 0.08 4.47 4.33 -2.91 -0.01 4.46 16 13 C 0.01 0.38 5.46 84.66 0.46 0.84 16 14 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 15 Si 0.96 45.92 29.54 68.60 2.03 47.94 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 19 C 0.11 3.87 3.90 38.15 0.15 4.02 16 20 C -0.14 -3.85 9.97 22.39 0.22 -3.63 16 21 C -0.11 -2.08 10.04 22.25 0.22 -1.86 16 22 C -0.11 -1.91 9.70 22.29 0.22 -1.70 16 23 C -0.08 -1.80 5.88 -19.88 -0.12 -1.92 16 24 C -0.12 -1.80 9.60 71.23 0.68 -1.12 16 25 C -0.09 -2.68 5.90 -19.74 -0.12 -2.79 16 26 C -0.12 -3.85 7.71 71.24 0.55 -3.30 16 27 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.18 3.80 8.10 -2.39 -0.02 3.78 16 33 H 0.19 3.58 8.10 -2.39 -0.02 3.56 16 34 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 35 H 0.02 1.14 8.05 -2.39 -0.02 1.12 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.16 1.65 8.06 -2.92 -0.02 1.63 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.92 8.09 -2.38 -0.02 0.90 16 42 H 0.07 1.12 5.94 -2.39 -0.01 1.10 16 43 H 0.06 2.39 7.04 -2.39 -0.02 2.37 16 44 H 0.10 2.35 5.95 -2.39 -0.01 2.34 16 45 H 0.04 1.56 6.04 -2.39 -0.01 1.54 16 Total: -1.00 -96.19 381.83 2.61 -93.58 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.00 Total: 13.01 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 5.10 Total: -28.78 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -0.77 Total: -83.42 kcal Atomic # 8 Polarization: -108.54 SS G_CDS: -4.52 Total: -113.05 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 70.94 SS G_CDS: -0.22 Total: 70.72 kcal Total: -96.19 2.61 -93.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732094224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.864 kcal (2) G-P(sol) polarization free energy of solvation -96.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds