Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35639 * 116.99604 * 2 1 4 4 C 1.38623 * 120.14478 * 359.97438 * 3 2 1 5 5 C 1.38134 * 120.16179 * 180.02562 * 4 3 2 6 6 C 1.38423 * 120.44931 * 0.02989 * 5 4 3 7 7 C 1.38118 * 120.28142 * 359.97438 * 6 5 4 8 8 F 1.35100 * 120.08481 * 179.97438 * 7 6 5 9 9 C 1.40035 * 119.82573 * 0.23284 * 7 6 5 10 10 C 1.47240 * 120.21759 * 179.72010 * 9 7 6 11 11 O 1.21530 * 120.00143 * 90.00063 * 10 9 7 12 12 O 1.34764 * 120.00385 * 270.00623 * 10 9 7 13 13 C 1.45195 * 117.00516 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47170 * 29.99613 * 13 12 10 15 15 C 1.52996 * 109.47429 * 270.00064 * 13 12 10 16 16 C 1.50700 * 109.47348 * 149.99647 * 13 12 10 17 17 O 1.21274 * 120.00095 * 16.02575 * 16 13 12 18 18 N 1.34781 * 119.99809 * 196.02895 * 16 13 12 19 19 C 1.46499 * 120.00314 * 5.36398 * 18 16 13 20 20 C 1.46499 * 119.99772 * 185.36270 * 18 16 13 21 21 C 1.50706 * 109.47036 * 90.00105 * 20 18 16 22 22 H 1.08004 * 119.99720 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99937 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99946 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99779 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47216 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46892 * 119.99699 * 25 23 21 28 28 H 1.48493 * 109.47014 * 239.99391 * 25 23 21 29 29 H 1.09007 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47196 * 300.00147 * 1 2 3 31 31 H 1.08999 * 109.47339 * 60.00516 * 1 2 3 32 32 H 1.07999 * 119.92106 * 0.02905 * 4 3 2 33 33 H 1.08001 * 119.77587 * 180.02562 * 5 4 3 34 34 H 1.08007 * 119.86163 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47477 * 66.12867 * 15 13 12 36 36 H 1.08995 * 109.47755 * 186.13571 * 15 13 12 37 37 H 1.09002 * 109.46620 * 306.13643 * 15 13 12 38 38 H 1.08996 * 109.47066 * 84.82390 * 19 18 16 39 39 H 1.09000 * 109.46871 * 204.82825 * 19 18 16 40 40 H 1.09006 * 109.46616 * 324.82097 * 19 18 16 41 41 H 1.09001 * 109.47594 * 209.99912 * 20 18 16 42 42 H 1.08997 * 109.47420 * 329.99998 * 20 18 16 43 43 H 0.97007 * 119.99721 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2926 2.3730 -0.0005 5 6 1.9192 3.6040 -0.0011 6 6 3.3009 3.6878 -0.0017 7 6 4.0683 2.5394 -0.0013 8 9 5.4165 2.6259 -0.0024 9 6 3.4452 1.2854 -0.0051 10 6 4.2548 0.0556 -0.0109 11 8 4.5905 -0.4559 1.0392 12 8 4.6239 -0.5028 -1.1806 13 6 5.4218 -1.7138 -1.1103 14 1 5.1682 -2.2640 -0.2042 15 6 6.9065 -1.3455 -1.0845 16 6 5.1382 -2.5729 -2.3155 17 8 4.5821 -2.0967 -3.2824 18 7 5.5025 -3.8705 -2.3189 19 6 6.0668 -4.4761 -1.1101 20 6 5.3341 -4.6755 -3.5313 21 6 6.5814 -4.5840 -4.3722 22 1 7.4158 -3.9858 -4.0372 23 6 6.6567 -5.2633 -5.5697 24 7 5.6404 -5.9914 -5.9778 25 14 8.2025 -5.1493 -6.6124 26 1 9.1928 -4.2740 -5.9355 27 1 8.7810 -6.5055 -6.7896 28 1 7.8627 -4.5787 -7.9405 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 0.2140 2.3177 -0.0005 33 1 1.3271 4.5073 -0.0011 34 1 3.7810 4.6553 -0.0025 35 1 7.1339 -0.8172 -0.1586 36 1 7.5072 -2.2533 -1.1417 37 1 7.1364 -0.7035 -1.9349 38 1 5.2585 -4.8100 -0.4597 39 1 6.6868 -5.3290 -1.3865 40 1 6.6753 -3.7397 -0.5850 41 1 5.1572 -5.7151 -3.2556 42 1 4.4836 -4.3010 -4.1009 43 1 5.6936 -6.4695 -6.8202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745311605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -185.537894 kcal Electronic energy + Delta-G solvation = -29772.450888 eV Core-core repulsion = 25311.742520 eV Total energy + Delta-G solvation = -4460.708369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.24164 -42.15910 -41.21070 -40.41990 -38.39836 -37.71868 -36.73730 -34.89041 -33.42103 -32.37182 -31.11111 -29.73933 -28.40996 -27.64041 -26.46487 -25.66466 -24.12936 -23.43728 -22.28045 -20.50492 -19.96677 -19.18601 -18.71829 -18.47204 -18.32951 -17.65228 -17.27179 -17.17041 -16.98222 -16.91551 -16.58641 -16.33938 -16.19153 -15.82950 -15.65436 -14.90177 -14.79413 -14.38355 -14.14352 -14.02427 -13.71881 -13.62806 -13.52279 -13.49070 -13.39429 -13.14444 -12.92555 -12.89974 -12.73637 -12.55296 -12.51253 -12.23410 -12.10303 -12.07889 -11.83666 -11.70822 -10.71579 -10.66573 -10.16779 -9.57189 -9.51925 -8.24831 -6.39743 -0.32828 0.05725 0.70654 1.16659 1.36655 1.39097 1.49064 1.54527 1.93121 2.23769 2.35142 2.40315 3.05340 3.09636 3.29826 3.34907 3.63475 3.70181 3.76106 3.77639 3.90386 4.17342 4.23034 4.28613 4.35603 4.41392 4.49596 4.59171 4.61417 4.69725 4.79718 4.86504 4.88368 4.97875 4.99957 5.08268 5.16593 5.17788 5.48748 5.51458 5.75441 6.00925 6.11138 6.28987 6.53030 6.68726 7.13716 7.32816 8.83180 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002821 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.532057 B = 9923.975956 C =10349.269079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.342 6.342 3 C 0.182 3.818 4 C -0.210 4.210 5 C -0.009 4.009 6 C -0.182 4.182 7 C 0.155 3.845 8 F -0.137 7.137 9 C -0.222 4.222 10 C 0.527 3.473 11 O -0.512 6.512 12 O -0.337 6.337 13 C 0.076 3.924 14 H 0.120 0.880 15 C -0.159 4.159 16 C 0.504 3.496 17 O -0.576 6.576 18 N -0.599 5.599 19 C 0.066 3.934 20 C 0.259 3.741 21 C -0.545 4.545 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.970 3.030 26 H -0.265 1.265 27 H -0.268 1.268 28 H -0.282 1.282 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.181 0.819 33 H 0.195 0.805 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.032 0.968 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 19.589 17.654 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.256 6.256 3 C 0.135 3.865 4 C -0.228 4.228 5 C -0.026 4.026 6 C -0.201 4.201 7 C 0.135 3.865 8 F -0.115 7.115 9 C -0.225 4.225 10 C 0.371 3.629 11 O -0.401 6.401 12 O -0.252 6.252 13 C 0.018 3.982 14 H 0.137 0.863 15 C -0.216 4.216 16 C 0.291 3.709 17 O -0.456 6.456 18 N -0.331 5.331 19 C -0.076 4.076 20 C 0.138 3.862 21 C -0.584 4.584 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.567 5.567 25 Si 0.795 3.205 26 H -0.190 1.190 27 H -0.193 1.193 28 H -0.208 1.208 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.198 0.802 33 H 0.212 0.788 34 H 0.195 0.805 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.401 19.283 17.320 27.572 hybrid contribution 0.861 -0.700 -0.859 1.403 sum -8.540 18.583 16.461 26.253 Atomic orbital electron populations 1.23568 0.74437 1.06092 1.03786 1.86067 1.25344 1.26908 1.87236 1.18846 0.88816 0.86752 0.92090 1.21727 1.02433 0.90387 1.08250 1.21581 0.92912 0.98863 0.89276 1.21443 0.95065 0.97157 1.06393 1.17615 0.76989 0.92502 0.99373 1.91524 1.29656 1.96925 1.93441 1.18446 0.92345 0.90444 1.21272 1.21219 0.76191 0.84031 0.81495 1.90789 1.53437 1.62703 1.33133 1.86803 1.64609 1.39644 1.34158 1.22655 0.93437 0.84105 0.97977 0.86276 1.22179 0.90590 1.04591 1.04222 1.20477 0.79141 0.82918 0.88366 1.90648 1.43704 1.73352 1.37890 1.48059 1.61035 1.09073 1.14903 1.22170 0.99558 1.00322 0.85537 1.18895 0.96158 0.89556 0.81563 1.21729 1.01213 1.29727 1.05706 0.92399 1.25878 1.00133 0.94524 0.98569 1.70064 1.32430 1.31563 1.22663 0.85324 0.78772 0.78393 0.78060 1.18960 1.19316 1.20792 0.87154 0.89325 0.90249 0.80187 0.78823 0.80510 0.89098 0.87887 0.91657 0.90929 0.89686 0.89284 0.94955 0.98206 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -8.82 9.95 -89.53 -0.89 -9.71 16 3 C 0.18 4.35 6.70 22.85 0.15 4.51 16 4 C -0.21 -2.71 9.03 22.34 0.20 -2.51 16 5 C -0.01 -0.08 10.02 22.29 0.22 0.14 16 6 C -0.18 -2.56 10.00 22.29 0.22 -2.34 16 7 C 0.15 3.78 7.29 22.68 0.17 3.94 16 8 F -0.14 -3.75 16.83 44.97 0.76 -3.00 16 9 C -0.22 -6.59 5.77 -19.98 -0.12 -6.71 16 10 C 0.53 19.24 6.55 70.19 0.46 19.70 16 11 O -0.51 -19.48 16.37 19.74 0.32 -19.16 16 12 O -0.34 -13.72 9.48 -50.51 -0.48 -14.20 16 13 C 0.08 2.89 2.14 29.85 0.06 2.96 16 14 H 0.12 4.07 6.31 -2.39 -0.02 4.05 16 15 C -0.16 -4.97 9.19 71.98 0.66 -4.31 16 16 C 0.50 23.84 6.95 87.66 0.61 24.45 16 17 O -0.58 -33.19 16.13 15.25 0.25 -32.95 16 18 N -0.60 -27.14 2.86 -851.13 -2.43 -29.57 16 19 C 0.07 2.11 9.79 127.77 1.25 3.37 16 20 C 0.26 14.37 5.18 85.64 0.44 14.82 16 21 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 22 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 23 C 0.01 0.47 5.46 84.65 0.46 0.93 16 24 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 25 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 32 H 0.18 0.95 6.29 -2.91 -0.02 0.93 16 33 H 0.19 -0.15 8.06 -2.91 -0.02 -0.18 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 2.88 6.33 -2.39 -0.02 2.87 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.69 8.03 -2.39 -0.02 2.67 16 40 H 0.09 2.34 4.92 -2.38 -0.01 2.32 16 41 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 42 H 0.00 -0.01 7.35 -2.39 -0.02 -0.03 16 43 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -87.78 376.46 7.04 -80.74 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.05 Total: 8.15 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 6.15 Total: 28.71 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -2.15 Total: -85.79 kcal Atomic # 8 Polarization: -75.22 SS G_CDS: -0.80 Total: -76.02 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.76 Total: -3.00 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -87.78 7.04 -80.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745311605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.803 kcal (2) G-P(sol) polarization free energy of solvation -87.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds