Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46864 * 2 1 4 4 C 1.50699 * 109.47386 * 120.00113 * 2 1 3 5 5 H 1.07997 * 119.99615 * 119.99422 * 4 2 1 6 6 C 1.37871 * 120.00089 * 300.00240 * 4 2 1 7 7 N 1.31522 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47057 * 270.00087 * 8 6 4 10 10 H 1.48508 * 109.46764 * 30.00048 * 8 6 4 11 11 H 1.48504 * 109.47217 * 149.99654 * 8 6 4 12 12 N 1.46501 * 109.47009 * 240.00357 * 2 1 3 13 13 S 1.65605 * 120.00056 * 95.00051 * 12 2 1 14 14 O 1.42100 * 106.39812 * 178.54028 * 13 12 2 15 15 O 1.42097 * 106.40102 * 311.45917 * 13 12 2 16 16 C 1.76194 * 107.21612 * 65.00077 * 13 12 2 17 17 C 1.38408 * 119.82393 * 269.72020 * 16 13 12 18 18 C 1.37889 * 120.17153 * 179.77138 * 17 16 13 19 19 C 1.39857 * 119.82258 * 0.52537 * 18 17 16 20 20 C 1.47169 * 120.17015 * 179.70317 * 19 18 17 21 21 O 1.21249 * 119.99836 * 173.97986 * 20 19 18 22 22 C 1.50704 * 119.99884 * 353.98380 * 20 19 18 23 23 C 1.52996 * 109.46946 * 184.91363 * 22 20 19 24 24 C 1.53001 * 109.46853 * 304.90886 * 22 20 19 25 25 C 1.52999 * 109.47210 * 64.91202 * 22 20 19 26 26 C 1.39850 * 119.65851 * 359.73627 * 19 18 17 27 27 C 1.37887 * 119.82292 * 359.97438 * 26 19 18 28 28 H 1.09001 * 109.47091 * 299.99806 * 1 2 3 29 29 H 1.09008 * 109.47108 * 59.99590 * 1 2 3 30 30 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00314 * 179.97438 * 7 6 4 32 32 H 0.97001 * 120.00077 * 274.99681 * 12 2 1 33 33 H 1.07996 * 119.91234 * 0.02562 * 17 16 13 34 34 H 1.08003 * 120.08511 * 180.23776 * 18 17 16 35 35 H 1.08994 * 109.47875 * 59.99415 * 23 22 20 36 36 H 1.08997 * 109.47351 * 180.02562 * 23 22 20 37 37 H 1.09003 * 109.46927 * 299.99719 * 23 22 20 38 38 H 1.09003 * 109.46987 * 65.30550 * 24 22 20 39 39 H 1.09002 * 109.46992 * 185.30375 * 24 22 20 40 40 H 1.08994 * 109.47387 * 305.30116 * 24 22 20 41 41 H 1.08994 * 109.47195 * 55.10546 * 25 22 20 42 42 H 1.08996 * 109.47273 * 175.10732 * 25 22 20 43 43 H 1.09001 * 109.46736 * 295.10259 * 25 22 20 44 44 H 1.08002 * 120.09165 * 179.97438 * 26 19 18 45 45 H 1.08007 * 119.91362 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 1.3429 -2.1618 4.4117 10 1 3.6295 -1.7584 3.7120 11 1 2.4867 -0.1414 5.1122 12 7 2.0183 -0.6905 -1.1962 13 16 2.4121 0.1773 -2.5505 14 8 2.8775 -0.7633 -3.5085 15 8 1.3246 1.0594 -2.7922 16 6 3.7927 1.1910 -2.1371 17 6 3.5861 2.4649 -1.6369 18 6 4.6613 3.2625 -1.3066 19 6 5.9632 2.7853 -1.4886 20 6 7.1164 3.6326 -1.1447 21 8 8.2396 3.1793 -1.1998 22 6 6.9011 5.0637 -0.7241 23 6 8.2558 5.7514 -0.5435 24 6 6.0968 5.7960 -1.8002 25 6 6.1321 5.0964 0.5982 26 6 6.1637 1.4991 -1.9997 27 6 5.0781 0.7114 -2.3196 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7089 1.1613 3.4844 32 1 2.1110 -1.6561 -1.1950 33 1 2.5801 2.8335 -1.5011 34 1 4.4984 4.2549 -0.9127 35 1 8.8037 5.7281 -1.4855 36 1 8.1001 6.7863 -0.2389 37 1 8.8288 5.2297 0.2230 38 1 5.0974 5.3653 -1.8629 39 1 6.0217 6.8523 -1.5417 40 1 6.5983 5.6922 -2.7623 41 1 6.6625 4.5016 1.3417 42 1 6.0520 6.1261 0.9465 43 1 5.1340 4.6850 0.4483 44 1 7.1661 1.1237 -2.1435 45 1 5.2312 -0.2823 -2.7140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749177763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -109.208745 kcal Electronic energy + Delta-G solvation = -28096.341972 eV Core-core repulsion = 24205.156660 eV Total energy + Delta-G solvation = -3891.185312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72416 -39.49899 -38.35028 -37.24317 -37.00532 -36.92775 -34.10844 -32.76188 -32.24457 -30.11533 -28.27032 -28.17596 -27.20524 -26.48931 -23.98558 -23.14362 -22.80402 -20.60065 -20.07655 -19.25161 -18.73780 -17.91089 -17.59865 -17.32353 -16.99292 -16.34142 -16.16695 -16.10388 -15.66478 -15.29881 -15.02614 -14.69280 -14.50520 -14.45703 -14.11026 -13.99303 -13.80584 -13.49628 -13.34669 -13.26933 -13.13651 -13.12311 -13.01849 -12.98882 -12.82220 -12.67222 -12.43551 -12.37887 -12.22036 -12.11843 -11.98938 -11.94143 -11.56016 -11.08844 -10.69610 -10.61049 -10.50966 -10.18416 -10.09462 -8.12334 -6.25590 -0.95130 -0.49630 0.16462 1.01713 1.44815 1.47818 1.55307 2.08687 2.40194 2.47500 2.71613 2.79170 3.17743 3.28549 3.58576 3.63108 3.75555 3.87463 3.90871 4.12518 4.21027 4.32765 4.45304 4.51973 4.65816 4.69481 4.75367 4.78172 4.88408 4.88859 4.90844 4.93301 4.95078 5.02362 5.06259 5.13574 5.19518 5.21805 5.29866 5.37359 5.60525 5.61973 5.77522 6.05056 6.10241 6.26490 6.41956 6.84331 7.43809 8.92672 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.004343 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.707804 B = 6445.521113 C = 8058.042142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.277 3.723 3 H 0.032 0.968 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.284 1.284 12 N -1.098 6.098 13 S 2.704 3.296 14 O -0.987 6.987 15 O -0.982 6.982 16 C -0.650 4.650 17 C -0.041 4.041 18 C -0.097 4.097 19 C -0.126 4.126 20 C 0.406 3.594 21 O -0.471 6.471 22 C -0.106 4.106 23 C -0.131 4.131 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.095 4.095 27 C -0.038 4.038 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.266 0.734 32 H 0.418 0.582 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.150 0.850 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 9.888 -6.012 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.172 3.828 3 H 0.050 0.950 4 C -0.579 4.579 5 H 0.084 0.916 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.859 5.859 13 S 2.795 3.205 14 O -0.978 6.978 15 O -0.972 6.972 16 C -0.738 4.738 17 C -0.060 4.060 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.284 3.716 21 O -0.347 6.347 22 C -0.107 4.107 23 C -0.188 4.188 24 C -0.208 4.208 25 C -0.209 4.209 26 C -0.114 4.114 27 C -0.057 4.057 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.253 0.747 33 H 0.168 0.832 34 H 0.198 0.802 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.168 0.832 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.734 9.936 -6.715 15.445 hybrid contribution 0.664 -0.904 1.340 1.747 sum 10.398 9.032 -5.376 14.785 Atomic orbital electron populations 1.22161 0.98306 1.00026 1.00841 1.18323 0.91247 0.91805 0.81428 0.94988 1.21583 1.31974 1.13404 0.90921 0.91648 1.25547 0.95062 0.95613 1.01405 1.69967 1.36818 1.23498 1.24469 0.85637 0.78739 0.78390 0.79323 1.20239 1.19686 1.20985 1.55391 1.81016 1.19066 1.30461 1.01312 0.73686 0.73066 0.72472 1.93514 1.82610 1.62109 1.59538 1.93538 1.51788 1.67380 1.84462 1.31191 1.16795 1.10940 1.14855 1.21215 1.01269 0.91597 0.91953 1.22281 0.90486 1.01573 0.97114 1.21002 0.95523 0.95743 1.00452 1.23045 0.86726 0.90458 0.71372 1.90490 1.26875 1.75937 1.41402 1.21135 0.99584 0.91222 0.98726 1.21728 0.93865 1.01119 1.02098 1.22170 0.99898 1.01976 0.96781 1.22130 0.99993 1.04717 0.94033 1.21676 1.00117 0.93086 0.96504 1.21072 0.90300 1.00378 0.93917 0.90844 0.94927 0.94517 0.92505 0.74692 0.83222 0.80192 0.92691 0.89317 0.93147 0.90691 0.88724 0.92254 0.92982 0.88497 0.91051 0.83222 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.09 9.29 71.98 0.67 -6.42 16 2 C 0.28 12.63 2.76 44.24 0.12 12.76 16 3 H 0.03 1.52 7.24 -2.39 -0.02 1.51 16 4 C -0.54 -26.66 8.76 25.60 0.22 -26.43 16 5 H 0.07 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.02 1.24 5.30 84.65 0.45 1.68 16 7 N -0.91 -47.45 11.32 21.45 0.24 -47.20 16 8 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 9 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 N -1.10 -41.98 5.46 -172.52 -0.94 -42.92 16 13 S 2.70 96.73 5.65 -56.49 -0.32 96.41 16 14 O -0.99 -36.74 17.26 -128.00 -2.21 -38.95 16 15 O -0.98 -39.38 16.52 -128.00 -2.11 -41.49 16 16 C -0.65 -21.14 5.82 22.35 0.13 -21.01 16 17 C -0.04 -1.25 8.89 22.23 0.20 -1.05 16 18 C -0.10 -2.44 7.46 22.58 0.17 -2.27 16 19 C -0.13 -3.34 5.70 -20.15 -0.11 -3.46 16 20 C 0.41 9.99 5.95 28.03 0.17 10.16 16 21 O -0.47 -13.96 15.99 -2.93 -0.05 -14.01 16 22 C -0.11 -1.86 0.75 -52.93 -0.04 -1.90 16 23 C -0.13 -2.11 7.78 71.98 0.56 -1.55 16 24 C -0.15 -2.06 8.09 71.98 0.58 -1.48 16 25 C -0.15 -2.49 8.21 71.98 0.59 -1.90 16 26 C -0.09 -2.64 9.60 22.58 0.22 -2.42 16 27 C -0.04 -1.11 9.50 22.23 0.21 -0.90 16 28 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 29 H 0.03 1.41 7.64 -2.38 -0.02 1.39 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 32 H 0.42 14.44 8.83 -96.74 -0.85 13.59 16 33 H 0.15 4.43 7.59 -2.91 -0.02 4.40 16 34 H 0.18 3.37 3.34 -2.91 -0.01 3.36 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.93 8.05 -2.39 -0.02 0.91 16 38 H 0.07 1.02 4.82 -2.39 -0.01 1.01 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.21 5.02 -2.39 -0.01 1.20 16 44 H 0.15 3.73 7.66 -2.91 -0.02 3.71 16 45 H 0.16 4.08 7.60 -2.91 -0.02 4.06 16 Total: -1.00 -63.99 373.87 0.94 -63.05 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.17 Total: 28.86 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 4.13 Total: -46.19 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -0.70 Total: -90.12 kcal Atomic # 8 Polarization: -90.08 SS G_CDS: -4.37 Total: -94.45 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 96.73 SS G_CDS: -0.32 Total: 96.41 kcal Total: -63.99 0.94 -63.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749177763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.155 kcal (2) G-P(sol) polarization free energy of solvation -63.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds