Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.35896 * 117.00403 * 2 1 4 4 C 1.38735 * 120.06259 * 180.02562 * 3 2 1 5 5 C 1.38135 * 119.94561 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.06100 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94646 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47034 * 89.99945 * 7 6 5 9 9 C 1.46506 * 120.00239 * 90.00162 * 8 7 6 10 10 C 1.53000 * 109.46992 * 269.72138 * 9 8 7 11 11 C 1.52996 * 109.47210 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99828 * 269.71967 * 8 7 6 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 8 7 15 15 C 1.50699 * 119.99772 * 180.27730 * 13 8 7 16 16 S 1.81008 * 109.47081 * 180.02562 * 15 13 8 17 17 C 1.76191 * 100.00178 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99352 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00392 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47098 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46932 * 119.99772 * 21 19 17 24 24 H 1.48497 * 109.46953 * 239.99649 * 21 19 17 25 25 C 1.38269 * 120.10685 * 0.24951 * 6 5 4 26 26 C 1.38146 * 120.05646 * 359.45389 * 25 6 5 27 27 H 1.08996 * 109.47453 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47390 * 300.00422 * 1 2 3 30 30 H 1.08002 * 120.02294 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.97115 * 179.97438 * 5 4 3 32 32 H 1.08993 * 109.47297 * 329.99337 * 7 6 5 33 33 H 1.09001 * 109.46970 * 209.99489 * 7 6 5 34 34 H 1.09000 * 109.46803 * 29.71572 * 9 8 7 35 35 H 1.09000 * 109.47214 * 149.72366 * 9 8 7 36 36 H 1.09000 * 109.47214 * 300.00285 * 10 9 8 37 37 H 1.09008 * 109.47142 * 59.99450 * 10 9 8 38 38 H 1.08997 * 109.47037 * 300.00424 * 11 10 9 39 39 H 1.09000 * 109.46839 * 60.00324 * 11 10 9 40 40 H 0.96701 * 113.99607 * 180.02562 * 12 11 10 41 41 H 1.08999 * 109.47685 * 300.00183 * 15 13 8 42 42 H 1.08997 * 109.47517 * 60.00530 * 15 13 8 43 43 H 0.97004 * 119.99696 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.96920 * 179.70778 * 25 6 5 45 45 H 1.07999 * 120.02674 * 180.24895 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5168 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2072 5.4551 -1.3781 9 6 3.1874 6.2494 -2.0674 10 6 2.2187 5.3150 -2.7950 11 6 1.1532 6.1445 -3.5144 12 8 0.2482 5.2716 -4.1934 13 6 5.3513 5.1307 -2.0123 14 8 6.1957 4.4731 -1.4417 15 6 5.5814 5.5852 -3.4306 16 16 7.1956 4.9952 -3.9988 17 6 7.2021 5.6497 -5.6347 18 1 6.3580 6.2215 -5.9909 19 6 8.2921 5.4305 -6.4656 20 7 9.3207 4.7332 -6.0315 21 14 8.2993 6.1250 -8.1997 22 1 7.0345 6.8644 -8.4420 23 1 9.4513 7.0486 -8.3581 24 1 8.4177 5.0137 -9.1774 25 6 1.9211 3.6047 0.0079 26 6 1.2915 2.3750 0.0012 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0208 0.3799 -0.0005 31 1 5.1345 2.5750 0.0000 32 1 4.9442 4.9376 0.5162 33 1 3.3583 5.7457 0.5176 34 1 2.6383 6.8464 -1.3392 35 1 3.6677 6.9090 -2.7901 36 1 2.7677 4.7178 -3.5230 37 1 1.7384 4.6552 -2.0722 38 1 0.6044 6.7413 -2.7860 39 1 1.6333 6.8043 -4.2370 40 1 -0.4554 5.7302 -4.6728 41 1 4.8000 5.1798 -4.0734 42 1 5.5572 6.6741 -3.4718 43 1 10.0826 4.5803 -6.6121 44 1 1.3342 4.5114 0.0139 45 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890644073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -99.043231 kcal Electronic energy + Delta-G solvation = -27166.291096 eV Core-core repulsion = 23275.546593 eV Total energy + Delta-G solvation = -3890.744503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39269 -39.53751 -37.58102 -37.27198 -35.56544 -32.44448 -32.40146 -31.26542 -30.72666 -29.14426 -27.67283 -25.92795 -25.50366 -24.74252 -22.71620 -21.85415 -21.35184 -19.21893 -18.26413 -17.81165 -17.35046 -16.84635 -16.40376 -15.99459 -15.88908 -15.57531 -15.43169 -14.80914 -14.79234 -14.21097 -14.02279 -13.90708 -13.85397 -13.54103 -13.16750 -13.01674 -12.83616 -12.69381 -12.52681 -12.21090 -11.92416 -11.82441 -11.60085 -11.38341 -11.20531 -11.06016 -10.99849 -10.92035 -10.83185 -10.73817 -10.13195 -9.78248 -9.39319 -9.05928 -8.99281 -8.63708 -8.20286 -8.15002 -6.47784 -6.20357 -3.90302 1.30114 1.33355 2.92745 3.07231 3.13819 3.22266 3.26452 3.31605 3.56921 3.81350 4.11770 4.21599 4.60714 4.71002 4.77424 4.84405 4.87630 4.91388 4.93457 5.04314 5.12958 5.14902 5.19181 5.20972 5.22461 5.32526 5.38952 5.44513 5.52414 5.61585 5.66334 5.77627 5.87440 5.96660 6.01979 6.07994 6.21107 6.25303 6.27564 6.60605 6.66269 6.75090 7.28568 7.42720 7.53897 7.61341 8.36764 8.56881 9.25189 10.87124 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.003026 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.803303 B = 9250.035127 C = 9967.693692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.152 4.152 5 C -0.052 4.052 6 C -0.140 4.140 7 C 0.160 3.840 8 N -0.614 5.614 9 C 0.116 3.884 10 C -0.148 4.148 11 C 0.079 3.921 12 O -0.573 6.573 13 C 0.537 3.463 14 O -0.512 6.512 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.067 4.067 26 C -0.212 4.212 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.378 0.622 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.267 0.733 44 H 0.121 0.879 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 0.601 12.604 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.171 4.171 5 C -0.071 4.071 6 C -0.141 4.141 7 C 0.038 3.962 8 N -0.349 5.349 9 C -0.008 4.008 10 C -0.187 4.187 11 C 0.001 3.999 12 O -0.378 6.378 13 C 0.325 3.675 14 O -0.385 6.385 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.681 4.681 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.086 4.086 26 C -0.231 4.231 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.224 0.776 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.094 -1.080 13.682 24.334 hybrid contribution -1.777 1.744 -2.188 3.315 sum -21.871 0.665 11.494 24.717 Atomic orbital electron populations 1.23025 0.78622 1.03760 1.01280 1.86068 1.21219 1.27187 1.88778 1.19067 0.92397 0.84026 0.96390 1.20487 0.91244 0.98928 1.06425 1.21106 1.00807 0.90708 0.94467 1.20160 0.93512 0.95944 1.04533 1.20255 1.01088 0.91723 0.83146 1.47981 1.18003 1.55178 1.13700 1.21423 0.89619 0.92938 0.96801 1.22124 0.96451 0.99487 1.00620 1.22086 0.90861 0.92054 0.94943 1.86514 1.43788 1.37139 1.70342 1.20321 0.80414 0.78909 0.87890 1.90672 1.43310 1.37514 1.67036 1.23588 1.07404 1.04248 0.94906 1.85375 1.12508 1.70966 1.14535 1.22887 1.06840 1.39577 0.98845 0.90974 1.24986 0.94629 0.94989 0.98987 1.70031 1.06419 1.37260 1.36542 0.86129 0.78171 0.78723 0.82550 1.19645 1.20583 1.20575 1.20737 0.93809 0.96781 0.97254 1.21127 0.99711 0.92379 1.09891 0.92634 0.88393 0.92819 0.85207 0.84378 0.88861 0.90134 0.90434 0.89748 0.90544 0.90217 0.93809 0.93337 0.77595 0.89326 0.89385 0.92267 0.86119 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.82 10.50 -19.41 -0.20 -4.02 16 3 C 0.13 1.61 6.69 -39.21 -0.26 1.35 16 4 C -0.15 -2.07 9.99 -39.44 -0.39 -2.47 16 5 C -0.05 -0.74 9.69 -39.61 -0.38 -1.12 16 6 C -0.14 -1.74 5.39 -104.60 -0.56 -2.31 16 7 C 0.16 1.90 5.58 -5.19 -0.03 1.87 16 8 N -0.61 -8.42 2.46 -175.06 -0.43 -8.85 16 9 C 0.12 1.22 5.26 -4.04 -0.02 1.20 16 10 C -0.15 -1.69 5.91 -26.73 -0.16 -1.84 16 11 C 0.08 0.73 7.05 37.16 0.26 0.99 16 12 O -0.57 -6.04 13.66 -35.23 -0.48 -6.52 16 13 C 0.54 10.01 7.69 -10.99 -0.08 9.93 16 14 O -0.51 -11.22 14.98 5.55 0.08 -11.14 16 15 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 C -0.07 -0.73 7.55 -39.60 -0.30 -1.03 16 26 C -0.21 -2.36 9.04 -39.43 -0.36 -2.71 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.14 2.10 7.59 -52.48 -0.40 1.70 16 32 H 0.09 1.22 7.36 -51.93 -0.38 0.84 16 33 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 36 H 0.08 1.11 7.22 -51.93 -0.37 0.73 16 37 H 0.08 0.93 5.33 -51.92 -0.28 0.65 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.38 2.14 9.12 45.56 0.42 2.56 16 41 H 0.09 1.74 7.19 -51.92 -0.37 1.37 16 42 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.12 1.03 7.76 -52.48 -0.41 0.62 16 45 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -36.47 386.95 -8.33 -44.79 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.69 Total: 3.54 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.93 Total: -10.76 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.30 Total: -34.36 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.60 Total: -21.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.47 -8.33 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890644073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.251 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds