Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.35896 * 117.00403 * 2 1 4 4 C 1.38735 * 120.06259 * 180.02562 * 3 2 1 5 5 C 1.38135 * 119.94561 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.06100 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94646 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47034 * 89.99945 * 7 6 5 9 9 C 1.46506 * 120.00239 * 90.00162 * 8 7 6 10 10 C 1.53000 * 109.46992 * 269.72138 * 9 8 7 11 11 C 1.52996 * 109.47210 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99828 * 269.71967 * 8 7 6 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 8 7 15 15 C 1.50699 * 119.99772 * 180.27730 * 13 8 7 16 16 S 1.81008 * 109.47081 * 180.02562 * 15 13 8 17 17 C 1.76191 * 100.00178 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00262 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00345 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99352 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00392 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47098 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46932 * 119.99772 * 21 19 17 24 24 H 1.48497 * 109.46953 * 239.99649 * 21 19 17 25 25 C 1.38269 * 120.10685 * 0.24951 * 6 5 4 26 26 C 1.38146 * 120.05646 * 359.45389 * 25 6 5 27 27 H 1.08996 * 109.47453 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47390 * 300.00422 * 1 2 3 30 30 H 1.08002 * 120.02294 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.97115 * 179.97438 * 5 4 3 32 32 H 1.08993 * 109.47297 * 329.99337 * 7 6 5 33 33 H 1.09001 * 109.46970 * 209.99489 * 7 6 5 34 34 H 1.09000 * 109.46803 * 29.71572 * 9 8 7 35 35 H 1.09000 * 109.47214 * 149.72366 * 9 8 7 36 36 H 1.09000 * 109.47214 * 300.00285 * 10 9 8 37 37 H 1.09008 * 109.47142 * 59.99450 * 10 9 8 38 38 H 1.08997 * 109.47037 * 300.00424 * 11 10 9 39 39 H 1.09000 * 109.46839 * 60.00324 * 11 10 9 40 40 H 0.96701 * 113.99607 * 180.02562 * 12 11 10 41 41 H 1.08999 * 109.47685 * 300.00183 * 15 13 8 42 42 H 1.08997 * 109.47517 * 60.00530 * 15 13 8 43 43 H 0.97004 * 119.99696 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.96920 * 179.70778 * 25 6 5 45 45 H 1.07999 * 120.02674 * 180.24895 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5168 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2072 5.4551 -1.3781 9 6 3.1874 6.2494 -2.0674 10 6 2.2187 5.3150 -2.7950 11 6 1.1532 6.1445 -3.5144 12 8 0.2482 5.2716 -4.1934 13 6 5.3513 5.1307 -2.0123 14 8 6.1957 4.4731 -1.4417 15 6 5.5814 5.5852 -3.4306 16 16 7.1956 4.9952 -3.9988 17 6 7.2021 5.6497 -5.6347 18 1 6.3580 6.2215 -5.9909 19 6 8.2921 5.4305 -6.4656 20 7 9.3207 4.7332 -6.0315 21 14 8.2993 6.1250 -8.1997 22 1 7.0345 6.8644 -8.4420 23 1 9.4513 7.0486 -8.3581 24 1 8.4177 5.0137 -9.1774 25 6 1.9211 3.6047 0.0079 26 6 1.2915 2.3750 0.0012 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0208 0.3799 -0.0005 31 1 5.1345 2.5750 0.0000 32 1 4.9442 4.9376 0.5162 33 1 3.3583 5.7457 0.5176 34 1 2.6383 6.8464 -1.3392 35 1 3.6677 6.9090 -2.7901 36 1 2.7677 4.7178 -3.5230 37 1 1.7384 4.6552 -2.0722 38 1 0.6044 6.7413 -2.7860 39 1 1.6333 6.8043 -4.2370 40 1 -0.4554 5.7302 -4.6728 41 1 4.8000 5.1798 -4.0734 42 1 5.5572 6.6741 -3.4718 43 1 10.0826 4.5803 -6.6121 44 1 1.3342 4.5114 0.0139 45 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890644073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -125.210050 kcal Electronic energy + Delta-G solvation = -27167.425774 eV Core-core repulsion = 23275.546593 eV Total energy + Delta-G solvation = -3891.879181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41011 -40.68338 -38.59693 -38.05345 -36.68418 -34.59109 -33.35957 -32.25206 -31.79625 -30.49982 -28.44269 -27.69062 -26.74895 -25.81507 -23.65006 -22.73342 -22.29738 -20.60342 -19.56321 -19.13031 -18.26345 -18.13656 -17.42253 -17.01744 -16.89229 -16.72866 -16.62789 -16.32052 -16.01600 -15.80994 -15.21380 -14.97010 -14.75709 -14.51823 -14.42284 -14.22590 -14.02610 -13.85715 -13.51230 -13.34987 -13.15714 -12.97586 -12.92222 -12.70123 -12.64265 -12.52582 -12.13991 -12.06158 -11.77640 -11.71336 -11.67528 -11.16354 -10.87761 -10.80757 -10.26751 -9.94928 -9.79209 -9.10156 -8.67010 -8.35257 -6.13068 0.33563 0.37894 1.26610 1.40385 1.46100 1.56613 1.60537 2.12525 2.26884 2.36362 2.83942 2.98861 3.21257 3.42801 3.70394 3.85042 3.91334 3.93906 3.98003 4.18827 4.21454 4.30630 4.37288 4.38864 4.41509 4.44048 4.45564 4.47415 4.57731 4.66078 4.69781 4.72188 4.73328 4.82792 5.06293 5.07551 5.26052 5.30792 5.34645 5.40957 5.58276 5.66456 5.81653 6.19149 6.28751 6.43766 6.96698 7.05974 7.17573 8.74243 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.003026 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.803303 B = 9250.035127 C = 9967.693692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.118 3.882 4 C -0.177 4.177 5 C -0.074 4.074 6 C -0.147 4.147 7 C 0.159 3.841 8 N -0.598 5.598 9 C 0.110 3.890 10 C -0.144 4.144 11 C 0.080 3.920 12 O -0.600 6.600 13 C 0.533 3.467 14 O -0.556 6.556 15 C -0.123 4.123 16 S -0.151 6.151 17 C -0.543 4.543 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.056 4.056 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.397 0.603 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.159 0.841 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.131 3.123 12.451 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.073 3.927 4 C -0.196 4.196 5 C -0.093 4.093 6 C -0.148 4.148 7 C 0.038 3.962 8 N -0.331 5.331 9 C -0.013 4.013 10 C -0.183 4.183 11 C 0.002 3.998 12 O -0.409 6.409 13 C 0.321 3.679 14 O -0.434 6.434 15 C -0.274 4.274 16 S 0.076 5.924 17 C -0.691 4.691 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.201 1.201 25 C -0.074 4.074 26 C -0.228 4.228 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.247 0.753 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.176 0.824 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.266 1.466 13.540 27.827 hybrid contribution -0.671 0.899 -2.050 2.337 sum -24.937 2.365 11.490 27.559 Atomic orbital electron populations 1.23347 0.76290 1.05548 1.02373 1.86043 1.23686 1.27068 1.88657 1.19186 0.92099 0.85188 0.96253 1.20530 0.92439 0.98606 1.08004 1.21021 0.99829 0.92105 0.96316 1.20233 0.94453 0.95283 1.04881 1.20478 1.01151 0.92760 0.81854 1.47937 1.16800 1.54024 1.14295 1.21770 0.88894 0.92590 0.98004 1.22058 0.96862 0.99544 0.99843 1.22112 0.90544 0.91462 0.95661 1.86455 1.44778 1.38661 1.70968 1.20081 0.81766 0.78859 0.87234 1.90665 1.45380 1.39641 1.67686 1.23393 1.02621 1.05136 0.96286 1.85553 1.18579 1.72523 1.15727 1.23199 1.07367 1.39609 0.98957 0.90114 1.26133 0.93973 0.95113 1.03968 1.70196 1.07309 1.38771 1.38489 0.84910 0.78924 0.78062 0.76087 1.17967 1.19723 1.20073 1.21090 0.92961 0.98148 0.95240 1.21489 1.01129 0.91691 1.08464 0.91971 0.86503 0.91094 0.86048 0.87125 0.90879 0.85241 0.85472 0.89678 0.94742 0.90236 0.90249 0.93095 0.75300 0.88666 0.87281 0.92019 0.82360 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.96 10.50 -92.38 -0.97 -8.93 16 3 C 0.12 2.97 6.69 22.51 0.15 3.12 16 4 C -0.18 -5.16 9.99 22.36 0.22 -4.94 16 5 C -0.07 -2.22 9.69 22.25 0.22 -2.01 16 6 C -0.15 -3.52 5.39 -19.85 -0.11 -3.62 16 7 C 0.16 3.47 5.58 85.63 0.48 3.95 16 8 N -0.60 -15.43 2.46 -826.15 -2.03 -17.46 16 9 C 0.11 1.90 5.26 86.38 0.45 2.36 16 10 C -0.14 -2.88 5.91 30.59 0.18 -2.70 16 11 C 0.08 1.17 7.05 71.98 0.51 1.68 16 12 O -0.60 -10.87 13.66 -148.98 -2.04 -12.91 16 13 C 0.53 20.26 7.69 87.66 0.67 20.93 16 14 O -0.56 -25.85 14.98 -3.04 -0.05 -25.90 16 15 C -0.12 -5.09 4.71 71.24 0.34 -4.76 16 16 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 17 C -0.54 -31.57 9.50 67.95 0.65 -30.92 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.77 13.22 21.65 0.29 -56.48 16 21 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C -0.06 -1.03 7.55 22.26 0.17 -0.86 16 26 C -0.21 -4.08 9.04 22.37 0.20 -3.88 16 27 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 30 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.11 3.84 7.59 -2.91 -0.02 3.82 16 32 H 0.07 1.93 7.36 -2.39 -0.02 1.91 16 33 H 0.13 1.59 7.83 -2.39 -0.02 1.57 16 34 H 0.13 1.07 7.89 -2.39 -0.02 1.05 16 35 H 0.08 1.52 6.44 -2.39 -0.02 1.50 16 36 H 0.03 0.97 7.22 -2.39 -0.02 0.95 16 37 H 0.08 1.57 5.33 -2.38 -0.01 1.56 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.40 3.28 9.12 -74.06 -0.68 2.61 16 41 H 0.10 3.79 7.19 -2.40 -0.02 3.77 16 42 H 0.11 4.00 7.40 -2.40 -0.02 3.98 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.16 1.72 7.76 -2.91 -0.02 1.70 16 45 H 0.15 2.05 6.30 -2.91 -0.02 2.03 16 Total: -1.00 -85.50 386.95 2.11 -83.38 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.34 Total: 20.93 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 5.71 Total: -19.08 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -1.74 Total: -73.95 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -3.05 Total: -47.74 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -85.50 2.11 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890644073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.826 kcal (2) G-P(sol) polarization free energy of solvation -85.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds