Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47087 * 2 1 4 4 C 1.50702 * 109.47270 * 119.99153 * 2 1 3 5 5 O 1.21286 * 120.00026 * 109.44411 * 4 2 1 6 6 N 1.34772 * 120.00222 * 289.44873 * 4 2 1 7 7 C 1.39933 * 120.00271 * 185.41419 * 6 4 2 8 8 C 1.38867 * 120.06434 * 324.50991 * 7 6 4 9 9 C 1.38115 * 119.92627 * 179.71929 * 8 7 6 10 10 C 1.38282 * 120.06916 * 0.54000 * 9 8 7 11 11 C 1.50704 * 119.93228 * 179.74263 * 10 9 8 12 12 C 1.50696 * 109.46904 * 270.01872 * 11 10 9 13 13 H 1.08005 * 120.00284 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99886 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00012 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99851 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46880 * 90.00113 * 16 14 12 18 18 H 1.48501 * 109.46932 * 209.99855 * 16 14 12 19 19 H 1.48499 * 109.47170 * 330.00063 * 16 14 12 20 20 C 1.38281 * 120.14302 * 359.75646 * 10 9 8 21 21 C 1.38118 * 120.06802 * 359.96240 * 20 10 9 22 22 C 1.53002 * 109.47600 * 239.99463 * 2 1 3 23 23 H 1.08999 * 109.46767 * 299.11548 * 22 2 1 24 24 C 1.53002 * 109.47047 * 179.11906 * 22 2 1 25 25 S 1.81399 * 109.46766 * 59.11645 * 22 2 1 26 26 C 1.81403 * 101.91882 * 180.02562 * 25 22 2 27 27 O 1.42096 * 108.57823 * 294.48763 * 25 22 2 28 28 O 1.42098 * 108.57680 * 65.51726 * 25 22 2 29 29 H 1.08996 * 109.47379 * 60.00942 * 1 2 3 30 30 H 1.09006 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47399 * 300.00170 * 1 2 3 32 32 H 0.97007 * 120.00027 * 5.40647 * 6 4 2 33 33 H 1.08003 * 120.04322 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.96595 * 180.25458 * 9 8 7 35 35 H 1.09001 * 109.46843 * 30.01859 * 11 10 9 36 36 H 1.08998 * 109.47238 * 150.01583 * 11 10 9 37 37 H 0.96998 * 119.99896 * 180.02562 * 15 14 12 38 38 H 1.07997 * 119.96828 * 179.97438 * 20 10 9 39 39 H 1.07999 * 120.03332 * 179.97438 * 21 20 10 40 40 H 1.08995 * 109.47188 * 306.17566 * 24 22 2 41 41 H 1.08999 * 109.47114 * 66.18002 * 24 22 2 42 42 H 1.09006 * 109.46564 * 186.17832 * 24 22 2 43 43 H 1.08997 * 109.47000 * 59.99907 * 26 25 22 44 44 H 1.08996 * 109.47284 * 180.02562 * 26 25 22 45 45 H 1.09000 * 109.47122 * 300.00117 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 8 2.5641 -1.7956 1.1297 6 7 1.8906 -0.1394 2.4432 7 6 2.4563 -0.7437 3.5714 8 6 2.4966 -2.1281 3.6726 9 6 3.0609 -2.7215 4.7848 10 6 3.5752 -1.9386 5.8020 11 6 4.1850 -2.5894 7.0169 12 6 3.1191 -2.8031 8.0605 13 1 2.1019 -2.4978 7.8639 14 6 3.4424 -3.3884 9.2663 15 7 4.6810 -3.7597 9.5058 16 14 2.1212 -3.6526 10.5602 17 1 1.4958 -4.9851 10.3641 18 1 2.7322 -3.5867 11.9121 19 1 1.0854 -2.5961 10.4330 20 6 3.5311 -0.5598 5.7071 21 6 2.9733 0.0398 4.5948 22 6 2.0401 -0.7214 -1.2491 23 1 1.6898 -1.7535 -1.2411 24 6 3.5699 -0.7021 -1.2602 25 16 1.4140 0.1183 -2.7302 26 6 2.1282 -0.8867 -4.0608 27 8 0.0004 -0.0218 -2.7666 28 8 1.9841 1.4186 -2.7885 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.3965 0.6905 2.5339 33 1 2.0909 -2.7402 2.8806 34 1 3.0963 -3.7981 4.8623 35 1 4.6166 -3.5502 6.7362 36 1 4.9654 -1.9448 7.4212 37 1 4.9083 -4.1718 10.3540 38 1 3.9332 0.0490 6.5033 39 1 2.9388 1.1167 4.5214 40 1 3.9211 0.3246 -1.1575 41 1 3.9468 -1.2998 -0.4302 42 1 3.9317 -1.1175 -2.2008 43 1 1.7750 -1.9138 -3.9699 44 1 1.8238 -0.4814 -5.0257 45 1 3.2155 -0.8685 -3.9862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -87.029799 kcal Electronic energy + Delta-G solvation = -26865.650500 eV Core-core repulsion = 22975.426939 eV Total energy + Delta-G solvation = -3890.223561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71531 -38.49935 -37.47583 -36.57544 -35.80992 -34.94993 -33.07943 -31.63458 -30.42008 -30.32095 -29.47199 -26.82165 -24.89251 -24.11585 -22.81194 -22.40148 -20.60248 -19.95971 -19.22665 -18.23119 -17.47634 -16.63999 -16.44545 -16.31860 -16.14600 -15.60295 -15.01494 -14.86588 -14.44409 -14.31792 -14.18951 -13.99531 -13.71763 -13.61121 -13.18939 -13.05340 -12.87714 -12.80108 -12.59980 -12.45674 -12.29341 -12.06969 -12.01128 -11.80243 -11.64589 -11.40647 -11.36927 -11.30568 -10.92871 -10.77725 -10.60159 -10.39182 -10.04348 -9.80042 -9.41713 -9.28970 -8.43931 -8.32874 -7.45406 -6.05215 -4.09331 -0.50719 1.78499 2.02062 2.22071 2.55223 2.89740 3.20908 3.29409 3.35683 3.39578 3.51773 3.77935 4.07492 4.28856 4.31643 4.38304 4.46657 4.53062 4.64991 4.82556 4.87487 5.02250 5.20070 5.28761 5.29134 5.31859 5.39437 5.48742 5.54519 5.77865 5.82192 5.94002 6.02209 6.07420 6.16136 6.60960 6.73143 6.85152 7.12861 7.17109 7.41282 7.49227 7.66639 7.83847 7.90437 8.05955 8.30655 8.95947 9.54477 11.04398 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.002011 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.291623 B =13916.798210 C =14079.302893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.094 4.094 3 H 0.112 0.888 4 C 0.524 3.476 5 O -0.515 6.515 6 N -0.665 5.665 7 C 0.099 3.901 8 C -0.116 4.116 9 C -0.110 4.110 10 C -0.040 4.040 11 C 0.047 3.953 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.109 4.109 21 C -0.141 4.141 22 C -0.551 4.551 23 H 0.148 0.852 24 C -0.152 4.152 25 S 2.417 3.583 26 C -0.656 4.656 27 O -0.935 6.935 28 O -0.936 6.936 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.406 0.594 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 8.859 -26.459 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.116 4.116 3 H 0.130 0.870 4 C 0.309 3.691 5 O -0.390 6.390 6 N -0.309 5.309 7 C 0.007 3.993 8 C -0.136 4.136 9 C -0.129 4.129 10 C -0.040 4.040 11 C 0.011 3.989 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.128 4.128 21 C -0.161 4.161 22 C -0.661 4.661 23 H 0.166 0.834 24 C -0.210 4.210 25 S 2.600 3.400 26 C -0.806 4.806 27 O -0.932 6.932 28 O -0.933 6.933 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.650 8.763 -26.526 28.502 hybrid contribution -0.425 -0.533 0.911 1.138 sum -6.075 8.230 -25.616 27.583 Atomic orbital electron populations 1.22350 0.91206 1.05041 1.05237 1.21095 0.98324 1.00717 0.91463 0.86959 1.20214 0.78857 0.86103 0.83876 1.90678 1.42285 1.20060 1.85944 1.43324 1.54365 1.27400 1.05824 1.17523 1.01668 0.92286 0.87820 1.21118 1.01086 0.92870 0.98497 1.21023 0.98820 1.00089 0.92961 1.20739 0.94258 0.93207 0.95819 1.18359 0.95903 0.95831 0.88854 1.21055 0.94901 1.39896 0.99081 0.92473 1.25021 0.95486 0.95533 0.98361 1.69954 1.17538 1.41391 1.24403 0.86534 0.81730 0.78644 0.80770 1.20593 1.21169 1.19821 1.20896 1.00090 0.94937 0.96864 1.20768 1.01605 0.98585 0.95134 1.30005 1.07684 1.13899 1.14480 0.83423 1.21856 0.89465 1.04554 1.05129 1.08099 0.76182 0.77166 0.78586 1.30262 1.14436 1.16650 1.19234 1.93588 1.27050 1.86956 1.85651 1.93597 1.79811 1.34184 1.85708 0.88918 0.90544 0.90589 0.75850 0.85403 0.86107 0.95300 0.95298 0.92834 0.85967 0.86761 0.90756 0.88220 0.91404 0.85031 0.85122 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.60 37.15 0.32 -1.05 16 2 C -0.09 -0.76 2.31 -91.77 -0.21 -0.98 16 3 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.52 6.08 6.47 -10.99 -0.07 6.01 16 5 O -0.51 -7.54 11.62 5.55 0.06 -7.47 16 6 N -0.66 -7.76 5.33 -9.86 -0.05 -7.81 16 7 C 0.10 1.56 6.30 -83.69 -0.53 1.03 16 8 C -0.12 -2.06 8.70 -39.39 -0.34 -2.41 16 9 C -0.11 -2.20 9.69 -39.61 -0.38 -2.59 16 10 C -0.04 -0.86 5.07 -104.59 -0.53 -1.39 16 11 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 12 C -0.51 -14.21 9.09 -34.44 -0.31 -14.53 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.11 -2.06 9.69 -39.61 -0.38 -2.45 16 21 C -0.14 -2.22 9.97 -39.39 -0.39 -2.62 16 22 C -0.55 -3.80 1.97 -26.73 -0.05 -3.85 16 23 H 0.15 0.88 7.95 -51.92 -0.41 0.47 16 24 C -0.15 -1.06 8.65 37.16 0.32 -0.74 16 25 S 2.42 15.65 4.54 -107.50 -0.49 15.16 16 26 C -0.66 -2.13 10.18 101.05 1.03 -1.10 16 27 O -0.94 -8.59 15.30 -57.83 -0.88 -9.48 16 28 O -0.94 -8.99 17.99 -57.83 -1.04 -10.03 16 29 H 0.09 0.72 5.26 -51.93 -0.27 0.45 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.41 3.35 8.83 -40.82 -0.36 2.99 16 33 H 0.13 2.23 6.23 -52.48 -0.33 1.91 16 34 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.96 6.15 -51.93 -0.32 0.64 16 42 H 0.07 0.27 6.27 -51.93 -0.33 -0.06 16 43 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.13 0.24 6.72 -51.92 -0.35 -0.11 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -36.31 378.82 -9.32 -45.62 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.55 Total: 1.53 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.79 Total: -24.07 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.68 Total: -33.39 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.86 Total: -26.98 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 15.65 SS G_CDS: -0.49 Total: 15.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.31 -9.32 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.408 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds