Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47087 * 2 1 4 4 C 1.50702 * 109.47270 * 119.99153 * 2 1 3 5 5 O 1.21286 * 120.00026 * 109.44411 * 4 2 1 6 6 N 1.34772 * 120.00222 * 289.44873 * 4 2 1 7 7 C 1.39933 * 120.00271 * 185.41419 * 6 4 2 8 8 C 1.38867 * 120.06434 * 324.50991 * 7 6 4 9 9 C 1.38115 * 119.92627 * 179.71929 * 8 7 6 10 10 C 1.38282 * 120.06916 * 0.54000 * 9 8 7 11 11 C 1.50704 * 119.93228 * 179.74263 * 10 9 8 12 12 C 1.50696 * 109.46904 * 270.01872 * 11 10 9 13 13 H 1.08005 * 120.00284 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99886 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00012 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99851 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46880 * 90.00113 * 16 14 12 18 18 H 1.48501 * 109.46932 * 209.99855 * 16 14 12 19 19 H 1.48499 * 109.47170 * 330.00063 * 16 14 12 20 20 C 1.38281 * 120.14302 * 359.75646 * 10 9 8 21 21 C 1.38118 * 120.06802 * 359.96240 * 20 10 9 22 22 C 1.53002 * 109.47600 * 239.99463 * 2 1 3 23 23 H 1.08999 * 109.46767 * 299.11548 * 22 2 1 24 24 C 1.53002 * 109.47047 * 179.11906 * 22 2 1 25 25 S 1.81399 * 109.46766 * 59.11645 * 22 2 1 26 26 C 1.81403 * 101.91882 * 180.02562 * 25 22 2 27 27 O 1.42096 * 108.57823 * 294.48763 * 25 22 2 28 28 O 1.42098 * 108.57680 * 65.51726 * 25 22 2 29 29 H 1.08996 * 109.47379 * 60.00942 * 1 2 3 30 30 H 1.09006 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47399 * 300.00170 * 1 2 3 32 32 H 0.97007 * 120.00027 * 5.40647 * 6 4 2 33 33 H 1.08003 * 120.04322 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.96595 * 180.25458 * 9 8 7 35 35 H 1.09001 * 109.46843 * 30.01859 * 11 10 9 36 36 H 1.08998 * 109.47238 * 150.01583 * 11 10 9 37 37 H 0.96998 * 119.99896 * 180.02562 * 15 14 12 38 38 H 1.07997 * 119.96828 * 179.97438 * 20 10 9 39 39 H 1.07999 * 120.03332 * 179.97438 * 21 20 10 40 40 H 1.08995 * 109.47188 * 306.17566 * 24 22 2 41 41 H 1.08999 * 109.47114 * 66.18002 * 24 22 2 42 42 H 1.09006 * 109.46564 * 186.17832 * 24 22 2 43 43 H 1.08997 * 109.47000 * 59.99907 * 26 25 22 44 44 H 1.08996 * 109.47284 * 180.02562 * 26 25 22 45 45 H 1.09000 * 109.47122 * 300.00117 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 8 2.5641 -1.7956 1.1297 6 7 1.8906 -0.1394 2.4432 7 6 2.4563 -0.7437 3.5714 8 6 2.4966 -2.1281 3.6726 9 6 3.0609 -2.7215 4.7848 10 6 3.5752 -1.9386 5.8020 11 6 4.1850 -2.5894 7.0169 12 6 3.1191 -2.8031 8.0605 13 1 2.1019 -2.4978 7.8639 14 6 3.4424 -3.3884 9.2663 15 7 4.6810 -3.7597 9.5058 16 14 2.1212 -3.6526 10.5602 17 1 1.4958 -4.9851 10.3641 18 1 2.7322 -3.5867 11.9121 19 1 1.0854 -2.5961 10.4330 20 6 3.5311 -0.5598 5.7071 21 6 2.9733 0.0398 4.5948 22 6 2.0401 -0.7214 -1.2491 23 1 1.6898 -1.7535 -1.2411 24 6 3.5699 -0.7021 -1.2602 25 16 1.4140 0.1183 -2.7302 26 6 2.1282 -0.8867 -4.0608 27 8 0.0004 -0.0218 -2.7666 28 8 1.9841 1.4186 -2.7885 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.3965 0.6905 2.5339 33 1 2.0909 -2.7402 2.8806 34 1 3.0963 -3.7981 4.8623 35 1 4.6166 -3.5502 6.7362 36 1 4.9654 -1.9448 7.4212 37 1 4.9083 -4.1718 10.3540 38 1 3.9332 0.0490 6.5033 39 1 2.9388 1.1167 4.5214 40 1 3.9211 0.3246 -1.1575 41 1 3.9468 -1.2998 -0.4302 42 1 3.9317 -1.1175 -2.2008 43 1 1.7750 -1.9138 -3.9699 44 1 1.8238 -0.4814 -5.0257 45 1 3.2155 -0.8685 -3.9862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -112.445414 kcal Electronic energy + Delta-G solvation = -26866.752603 eV Core-core repulsion = 22975.426939 eV Total energy + Delta-G solvation = -3891.325665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74696 -39.82046 -38.06265 -37.20126 -36.67103 -36.09443 -35.00319 -32.56961 -31.77998 -31.69114 -29.87041 -28.50835 -25.87032 -25.11948 -24.16804 -23.78767 -21.99509 -21.03987 -19.74904 -19.00404 -18.55765 -18.47403 -17.27287 -17.13891 -16.85875 -16.71651 -16.51223 -15.94467 -15.69245 -15.51539 -14.97988 -14.80328 -14.56064 -14.47220 -14.27515 -14.02711 -13.95483 -13.83363 -13.64602 -13.36827 -13.24364 -13.16567 -13.05400 -12.83653 -12.69409 -12.62627 -12.45861 -12.37054 -12.16039 -12.05290 -11.86877 -11.65323 -11.55989 -11.38574 -11.02289 -10.61784 -10.55978 -9.77020 -8.90693 -8.19129 -6.33671 -0.97694 0.42192 0.56339 1.39390 1.40559 1.51546 1.54285 1.78247 1.99150 2.39438 2.66463 2.98279 3.04961 3.10262 3.20691 3.57465 3.61207 4.00265 4.08422 4.09776 4.14648 4.15365 4.29274 4.34173 4.38041 4.59337 4.61579 4.64748 4.72698 4.73001 4.76457 4.94835 5.00809 5.11695 5.21751 5.30003 5.32724 5.33701 5.41952 5.48479 5.60063 5.74966 6.07320 6.11440 6.24084 6.43048 6.79044 7.11302 7.34776 8.88975 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.002011 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.291623 B =13916.798210 C =14079.302893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 H 0.132 0.868 4 C 0.523 3.477 5 O -0.545 6.545 6 N -0.656 5.656 7 C 0.117 3.883 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.073 4.073 11 C 0.057 3.943 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.264 1.264 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.555 4.555 23 H 0.155 0.845 24 C -0.157 4.157 25 S 2.427 3.573 26 C -0.644 4.644 27 O -0.967 6.967 28 O -0.970 6.970 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.426 0.574 33 H 0.131 0.869 34 H 0.109 0.891 35 H -0.001 1.001 36 H 0.006 0.994 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.158 0.842 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.152 0.848 44 H 0.144 0.856 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 10.316 -28.491 31.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.114 4.114 3 H 0.150 0.850 4 C 0.311 3.689 5 O -0.422 6.422 6 N -0.303 5.303 7 C 0.024 3.976 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.074 4.074 11 C 0.020 3.980 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.791 3.209 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.134 4.134 21 C -0.147 4.147 22 C -0.664 4.664 23 H 0.173 0.827 24 C -0.214 4.214 25 S 2.613 3.387 26 C -0.797 4.797 27 O -0.964 6.964 28 O -0.968 6.968 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.176 0.824 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.171 0.829 44 H 0.163 0.837 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.160 10.271 -28.552 31.177 hybrid contribution 0.067 -0.989 1.358 1.682 sum -7.093 9.282 -27.194 29.597 Atomic orbital electron populations 1.22392 0.90644 1.04967 1.06052 1.21176 0.98692 1.01411 0.90088 0.85015 1.20865 0.77866 0.85702 0.84511 1.90677 1.43460 1.21624 1.86396 1.43305 1.54222 1.28020 1.04720 1.17595 0.99772 0.91579 0.88702 1.21141 1.01142 0.94219 0.97622 1.20940 0.99783 0.99632 0.93719 1.20415 0.97112 0.94693 0.95186 1.18091 0.95112 0.94250 0.90549 1.21374 0.95224 1.39875 0.99986 0.92671 1.25955 0.97821 0.95101 1.00708 1.70081 1.19627 1.42169 1.25179 0.85426 0.78854 0.78849 0.77805 1.19875 1.20426 1.18841 1.20977 1.00450 0.93709 0.98251 1.21057 0.99538 1.00649 0.93418 1.30071 1.07693 1.14324 1.14285 0.82704 1.21897 0.89442 1.04400 1.05698 1.07591 0.75345 0.76832 0.78915 1.30157 1.15474 1.16745 1.17285 1.93548 1.29200 1.87429 1.86198 1.93553 1.80106 1.36798 1.86317 0.88909 0.91102 0.89052 0.73453 0.85158 0.87271 0.98273 0.97555 0.92579 0.85723 0.82440 0.90550 0.91039 0.88313 0.82927 0.83747 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.60 71.98 0.62 -1.79 16 2 C -0.09 -1.30 2.31 -11.54 -0.03 -1.33 16 3 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.52 11.17 6.47 87.66 0.57 11.74 16 5 O -0.54 -15.48 11.62 -3.05 -0.04 -15.51 16 6 N -0.66 -13.58 5.33 -303.51 -1.62 -15.20 16 7 C 0.12 3.46 6.30 38.15 0.24 3.70 16 8 C -0.12 -4.31 8.70 22.39 0.19 -4.11 16 9 C -0.12 -5.08 9.69 22.25 0.22 -4.86 16 10 C -0.07 -3.30 5.07 -19.84 -0.10 -3.40 16 11 C 0.06 3.10 5.10 29.10 0.15 3.25 16 12 C -0.53 -30.34 9.09 25.60 0.23 -30.10 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.00 0.12 5.46 84.66 0.46 0.59 16 15 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 16 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.12 -4.34 9.69 22.25 0.22 -4.13 16 21 C -0.13 -3.71 9.97 22.39 0.22 -3.49 16 22 C -0.56 -6.56 1.97 30.60 0.06 -6.50 16 23 H 0.16 1.57 7.95 -2.39 -0.02 1.55 16 24 C -0.16 -1.87 8.65 71.98 0.62 -1.25 16 25 S 2.43 26.32 4.54 -56.49 -0.26 26.07 16 26 C -0.64 -1.82 10.18 113.37 1.15 -0.66 16 27 O -0.97 -16.31 15.30 -127.37 -1.95 -18.26 16 28 O -0.97 -16.97 17.99 -127.37 -2.29 -19.26 16 29 H 0.09 1.29 5.26 -2.39 -0.01 1.28 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.43 5.46 8.83 -92.70 -0.82 4.65 16 33 H 0.13 4.56 6.23 -2.91 -0.02 4.54 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.00 -0.06 8.08 -2.39 -0.02 -0.08 16 36 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.32 6.15 -2.39 -0.01 1.30 16 42 H 0.10 0.49 6.27 -2.38 -0.01 0.48 16 43 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.15 -0.11 6.72 -2.39 -0.02 -0.12 16 Total: -1.00 -81.91 378.82 1.18 -80.74 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.19 Total: 13.51 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.83 Total: -42.35 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.33 Total: -71.45 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -4.27 Total: -53.03 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 26.32 SS G_CDS: -0.26 Total: 26.07 kcal Total: -81.91 1.18 -80.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.709 kcal (2) G-P(sol) polarization free energy of solvation -81.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds