Wall clock time and date at job start Sat Apr 11 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47089 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99771 * 2 1 3 5 5 O 1.21281 * 120.00122 * 240.00216 * 4 2 1 6 6 N 1.34783 * 119.99763 * 60.00475 * 4 2 1 7 7 C 1.39920 * 119.99800 * 184.63474 * 6 4 2 8 8 C 1.38870 * 120.07415 * 144.91287 * 7 6 4 9 9 C 1.38117 * 119.92921 * 180.29683 * 8 7 6 10 10 C 1.38279 * 120.07054 * 359.41923 * 9 8 7 11 11 C 1.50697 * 119.93255 * 180.32472 * 10 9 8 12 12 C 1.50702 * 109.47018 * 270.28062 * 11 10 9 13 13 H 1.07996 * 119.99889 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99968 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00024 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00012 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47394 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47179 * 120.00000 * 16 14 12 19 19 H 1.48501 * 109.47549 * 239.99805 * 16 14 12 20 20 C 1.38284 * 120.13889 * 0.59876 * 10 9 8 21 21 C 1.38114 * 120.07387 * 359.68353 * 20 10 9 22 22 C 1.52997 * 109.47097 * 120.00034 * 2 1 3 23 23 H 1.08992 * 109.47178 * 180.02562 * 22 2 1 24 24 C 1.52997 * 109.47123 * 59.99670 * 22 2 1 25 25 S 1.81403 * 109.47170 * 300.00109 * 22 2 1 26 26 C 1.81399 * 101.92149 * 180.02562 * 25 22 2 27 27 O 1.42103 * 108.57416 * 294.48598 * 25 22 2 28 28 O 1.42102 * 108.58260 * 65.51043 * 25 22 2 29 29 H 1.08996 * 109.47098 * 59.99775 * 1 2 3 30 30 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47052 * 300.00269 * 1 2 3 32 32 H 0.96994 * 119.99686 * 4.62682 * 6 4 2 33 33 H 1.07997 * 120.03315 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.95839 * 179.69917 * 9 8 7 35 35 H 1.09004 * 109.46667 * 30.27568 * 11 10 9 36 36 H 1.08997 * 109.47567 * 150.27667 * 11 10 9 37 37 H 0.97004 * 119.99934 * 179.97438 * 15 14 12 38 38 H 1.08005 * 119.96032 * 179.69703 * 20 10 9 39 39 H 1.07993 * 120.03865 * 179.97438 * 21 20 10 40 40 H 1.09000 * 109.47680 * 300.00176 * 24 22 2 41 41 H 1.09005 * 109.47135 * 60.00237 * 24 22 2 42 42 H 1.09004 * 109.47061 * 180.02562 * 24 22 2 43 43 H 1.09000 * 109.47190 * 59.99838 * 26 25 22 44 44 H 1.09010 * 109.46733 * 179.97438 * 26 25 22 45 45 H 1.08997 * 109.47320 * 299.99312 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.0911 -0.9632 -3.5954 8 6 1.2606 -0.9966 -4.7078 9 6 1.6401 -1.7066 -5.8301 10 6 2.8511 -2.3738 -5.8511 11 6 3.2655 -3.1415 -7.0799 12 6 2.7653 -4.5595 -6.9787 13 1 2.2040 -4.8734 -6.1111 14 6 3.0244 -5.4560 -7.9936 15 7 3.7075 -5.0735 -9.0504 16 14 2.4051 -7.2138 -7.8679 17 1 1.6687 -7.3890 -6.5903 18 1 1.4956 -7.5009 -9.0062 19 1 3.5580 -8.1490 -7.9075 20 6 3.6803 -2.3427 -4.7449 21 6 3.3040 -1.6394 -3.6174 22 6 2.0401 -0.7212 1.2492 23 1 3.1300 -0.7209 1.2495 24 6 1.5300 -2.1637 1.2492 25 16 1.4354 0.1339 2.7304 26 6 2.1478 -0.8723 4.0610 27 8 2.0222 1.4272 2.7776 28 8 0.0204 0.0118 2.7777 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2060 0.5758 -2.5447 33 1 0.3169 -0.4716 -4.6938 34 1 0.9924 -1.7370 -6.6937 35 1 2.8395 -2.6683 -7.9647 36 1 4.3527 -3.1443 -7.1572 37 1 3.8901 -5.7044 -9.7643 38 1 4.6233 -2.8689 -4.7627 39 1 3.9517 -1.6158 -2.7536 40 1 0.4400 -2.1637 1.2492 41 1 1.8933 -2.6776 0.3592 42 1 1.8930 -2.6774 2.1395 43 1 3.2346 -0.8675 3.9781 44 1 1.8555 -0.4580 5.0260 45 1 1.7816 -1.8956 3.9787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:25 Heat of formation + Delta-G solvation = -83.143960 kcal Electronic energy + Delta-G solvation = -27001.334622 eV Core-core repulsion = 23111.279564 eV Total energy + Delta-G solvation = -3890.055058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76220 -38.53862 -37.47204 -36.56735 -35.87683 -34.98495 -33.07692 -31.32448 -30.38567 -30.30817 -29.16741 -26.77891 -25.77747 -23.96076 -22.67835 -22.39523 -20.56042 -19.94016 -19.10674 -17.80222 -17.44475 -16.69300 -16.55918 -16.32974 -16.16710 -15.80275 -15.12915 -15.03210 -14.54446 -14.24462 -13.91553 -13.78190 -13.73139 -13.63632 -13.24752 -13.06165 -12.85819 -12.74893 -12.59648 -12.46020 -12.37090 -12.07662 -11.93500 -11.65487 -11.53443 -11.42478 -11.32935 -11.27529 -10.89070 -10.78610 -10.59661 -10.36425 -10.12235 -9.64257 -9.43759 -9.25966 -8.43671 -8.33137 -7.45039 -6.04969 -4.08809 -0.48502 1.78624 2.01827 2.24028 2.54766 2.90842 3.22579 3.28887 3.36584 3.42158 3.54204 3.81824 4.10367 4.30822 4.33357 4.38646 4.48558 4.54020 4.67505 4.79807 4.91246 5.08285 5.20999 5.29203 5.32067 5.38819 5.42914 5.49030 5.54469 5.80811 5.87763 5.99338 6.07188 6.10990 6.16365 6.60850 6.72902 6.85577 7.12758 7.16973 7.41317 7.49125 7.66800 7.83639 7.91078 8.06928 8.31251 8.96897 9.55177 11.04658 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.002195 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.004926 B =12752.021064 C =13277.401742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.113 0.887 4 C 0.523 3.477 5 O -0.512 6.512 6 N -0.664 5.664 7 C 0.100 3.900 8 C -0.141 4.141 9 C -0.109 4.109 10 C -0.040 4.040 11 C 0.047 3.953 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.549 4.549 23 H 0.144 0.856 24 C -0.160 4.160 25 S 2.416 3.584 26 C -0.655 4.655 27 O -0.941 6.941 28 O -0.932 6.932 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.406 0.594 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 12.455 24.106 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.116 4.116 3 H 0.131 0.869 4 C 0.308 3.692 5 O -0.387 6.387 6 N -0.309 5.309 7 C 0.007 3.993 8 C -0.161 4.161 9 C -0.128 4.128 10 C -0.041 4.041 11 C 0.010 3.990 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.658 4.658 23 H 0.162 0.838 24 C -0.218 4.218 25 S 2.599 3.401 26 C -0.805 4.805 27 O -0.938 6.938 28 O -0.929 6.929 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.241 0.759 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.930 12.446 24.155 27.616 hybrid contribution 0.040 -1.305 -0.108 1.310 sum -4.890 11.140 24.047 26.950 Atomic orbital electron populations 1.22401 0.91309 1.05156 1.05116 1.21036 0.98585 1.00518 0.91495 0.86869 1.20238 0.80332 0.84606 0.83974 1.90649 1.36295 1.25796 1.85970 1.43317 1.56675 1.26355 1.04513 1.17525 0.94939 1.00056 0.86733 1.20758 0.98544 1.02875 0.93923 1.20893 0.96890 0.97401 0.97567 1.20740 0.92851 0.93121 0.97356 1.18364 0.97347 0.93982 0.89278 1.21101 1.34771 0.94378 1.04572 0.92429 1.25014 0.95201 0.98886 0.95291 1.69966 1.39824 1.35243 1.08313 0.86485 0.78635 0.84537 0.78100 1.19662 1.20948 1.20934 1.21023 1.00420 0.98975 0.92446 1.21116 0.94839 0.99002 0.98697 1.29938 1.12441 1.09089 1.14352 0.83829 1.22045 1.02129 0.91372 1.06239 1.08113 0.76474 0.76856 0.78632 1.30251 1.14207 1.16857 1.19201 1.93603 1.79448 1.34882 1.85877 1.93576 1.26904 1.86899 1.85532 0.90746 0.90256 0.88894 0.75879 0.86770 0.85972 0.95284 0.95291 0.92902 0.86105 0.85403 0.90634 0.87190 0.91574 0.85145 0.85172 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.20 37.16 0.30 -1.09 16 2 C -0.09 -0.77 2.56 -91.77 -0.24 -1.01 16 3 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.52 6.12 6.71 -10.98 -0.07 6.04 16 5 O -0.51 -7.61 11.09 5.56 0.06 -7.55 16 6 N -0.66 -7.69 5.19 -9.86 -0.05 -7.74 16 7 C 0.10 1.56 6.30 -83.69 -0.53 1.03 16 8 C -0.14 -2.22 9.97 -39.39 -0.39 -2.61 16 9 C -0.11 -2.05 9.69 -39.61 -0.38 -2.44 16 10 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 11 C 0.05 1.20 5.10 -29.04 -0.15 1.06 16 12 C -0.51 -14.29 9.09 -34.44 -0.31 -14.60 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.11 -2.19 9.69 -39.61 -0.38 -2.58 16 21 C -0.12 -2.07 8.70 -39.39 -0.34 -2.41 16 22 C -0.55 -3.89 2.24 -26.73 -0.06 -3.95 16 23 H 0.14 0.84 8.10 -51.93 -0.42 0.42 16 24 C -0.16 -1.21 8.27 37.16 0.31 -0.90 16 25 S 2.42 16.06 4.56 -107.50 -0.49 15.57 16 26 C -0.66 -2.31 10.17 101.05 1.03 -1.28 16 27 O -0.94 -9.37 18.10 -57.83 -1.05 -10.42 16 28 O -0.93 -8.54 15.13 -57.83 -0.87 -9.42 16 29 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 30 H 0.08 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.09 0.72 5.28 -51.93 -0.27 0.45 16 32 H 0.41 3.25 8.39 -40.82 -0.34 2.91 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 39 H 0.13 2.21 6.22 -52.49 -0.33 1.89 16 40 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 41 H 0.11 1.18 5.51 -51.93 -0.29 0.89 16 42 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 43 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 44 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.13 0.29 6.87 -51.93 -0.36 -0.07 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -36.50 373.63 -9.23 -45.73 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.33 Total: 1.84 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -1.85 Total: -24.60 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.69 Total: -33.37 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -1.86 Total: -27.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 16.06 SS G_CDS: -0.49 Total: 15.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.50 -9.23 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.418 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds