Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35652 * 119.95417 * 2 1 4 4 O 1.34690 * 119.11131 * 0.03563 * 3 2 1 5 5 N 1.31854 * 121.78096 * 180.02562 * 3 2 1 6 6 C 1.32568 * 121.60444 * 359.97438 * 5 3 2 7 7 C 1.39432 * 119.70488 * 0.02562 * 6 5 3 8 8 C 1.46893 * 120.82249 * 180.02562 * 7 6 5 9 9 O 1.21669 * 119.99984 * 5.72841 * 8 7 6 10 10 N 1.34780 * 120.00010 * 185.73177 * 8 7 6 11 11 C 1.46498 * 119.99753 * 175.15034 * 10 8 7 12 12 C 1.53001 * 109.46861 * 179.72445 * 11 10 8 13 13 N 1.46896 * 109.47075 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00164 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47404 * 179.97438 * 14 13 12 16 16 O 1.21293 * 119.99601 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99932 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99593 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00136 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99955 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99589 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46999 * 89.99544 * 22 20 18 24 24 H 1.48494 * 109.47413 * 209.99840 * 22 20 18 25 25 H 1.48506 * 109.47059 * 329.99938 * 22 20 18 26 26 C 1.35019 * 119.95678 * 180.30428 * 2 1 3 27 27 O 1.21833 * 120.76964 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47468 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47044 * 120.00438 * 1 2 3 30 30 H 1.08995 * 109.47325 * 240.00383 * 1 2 3 31 31 H 0.96700 * 117.00185 * 179.97438 * 4 3 2 32 32 H 1.08002 * 120.14485 * 180.02562 * 6 5 3 33 33 H 0.96998 * 119.99562 * 354.86614 * 10 8 7 34 34 H 1.09003 * 109.46754 * 299.72139 * 11 10 8 35 35 H 1.08998 * 109.47376 * 59.71746 * 11 10 8 36 36 H 1.09003 * 109.46758 * 299.99751 * 12 11 10 37 37 H 1.08993 * 109.47435 * 59.99861 * 12 11 10 38 38 H 1.00907 * 111.00010 * 56.04197 * 13 12 11 39 39 H 1.09002 * 109.47217 * 299.99893 * 14 13 12 40 40 H 1.08996 * 109.47134 * 59.99912 * 14 13 12 41 41 H 0.97000 * 119.99907 * 0.02562 * 17 15 14 42 42 H 0.97003 * 119.99806 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1753 0.0000 4 8 1.4499 2.3306 0.0007 5 7 3.4602 1.2174 -0.0005 6 6 4.1905 0.1110 -0.0005 7 6 3.5605 -1.1328 -0.0006 8 6 4.3457 -2.3743 0.0000 9 8 5.5569 -2.3280 0.1056 10 7 3.7245 -3.5647 -0.1166 11 6 4.5127 -4.7949 -0.2230 12 6 3.5712 -5.9956 -0.3368 13 7 4.3615 -7.2291 -0.4441 14 6 3.4889 -8.4056 -0.5547 15 6 4.3333 -9.6491 -0.6633 16 8 5.5431 -9.5636 -0.6494 17 7 3.7441 -10.8561 -0.7747 18 6 4.5123 -11.9874 -0.8730 19 1 5.5896 -11.9113 -0.8606 20 6 3.9050 -13.2318 -0.9885 21 7 2.5942 -13.3243 -1.0030 22 14 4.9516 -14.7733 -1.1216 23 1 5.2213 -15.3073 0.2375 24 1 4.2286 -15.7951 -1.9205 25 1 6.2371 -14.4428 -1.7877 26 6 2.1392 -1.1698 -0.0062 27 8 1.5435 -2.2325 -0.0114 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5137 0.8900 31 1 1.9633 3.1501 0.0011 32 1 5.2688 0.1729 -0.0005 33 1 2.7554 -3.6071 -0.1259 34 1 5.1464 -4.7449 -1.1085 35 1 5.1363 -4.9048 0.6642 36 1 2.9375 -6.0455 0.5487 37 1 2.9477 -5.8856 -1.2240 38 1 4.9954 -7.3214 0.3356 39 1 2.8552 -8.4723 0.3297 40 1 2.8642 -8.3123 -1.4430 41 1 2.7765 -10.9244 -0.7855 42 1 2.1701 -14.1930 -1.0832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132242534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -88.814345 kcal Electronic energy + Delta-G solvation = -27800.094407 eV Core-core repulsion = 23395.792999 eV Total energy + Delta-G solvation = -4404.301408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65109 -40.00011 -39.08161 -38.24810 -37.64155 -36.13084 -35.87618 -34.15665 -33.61866 -31.43459 -31.16794 -29.16578 -28.70995 -26.28704 -25.29457 -24.39834 -23.68626 -22.00665 -21.23698 -20.13675 -19.45789 -19.20759 -18.19921 -17.82463 -17.61206 -16.80174 -16.44766 -16.05606 -15.94236 -15.74278 -15.26607 -15.18810 -14.91499 -14.58155 -14.38456 -14.05356 -14.01841 -13.82736 -13.60762 -13.31430 -13.29078 -13.03577 -12.75025 -12.30420 -11.82576 -11.46820 -11.37503 -11.29412 -11.24814 -10.99896 -10.98144 -10.77774 -10.35626 -10.17953 -10.09579 -9.46701 -9.17343 -8.87823 -8.42571 -8.03365 -7.91576 -6.37594 -3.78201 -0.25837 0.99248 1.10649 2.37586 2.54004 3.10125 3.21456 3.29761 3.31222 3.36456 3.39450 3.75550 3.95796 4.18004 4.33356 4.48335 4.55979 4.65689 4.71870 4.89765 5.00928 5.07821 5.12733 5.27227 5.29685 5.34011 5.57039 5.61238 5.82820 5.99279 6.02333 6.06871 6.17552 6.30660 6.49051 6.90447 6.99111 7.21604 7.59461 7.61429 7.68791 8.10803 8.23850 8.65898 9.22216 9.58794 10.10520 10.80232 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.001574 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.507716 B =17790.326009 C =18618.713296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.509 5.509 3 C 0.608 3.392 4 O -0.453 6.453 5 N -0.591 5.591 6 C 0.270 3.730 7 C -0.351 4.351 8 C 0.585 3.415 9 O -0.549 6.549 10 N -0.717 5.717 11 C 0.120 3.880 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.554 3.446 27 O -0.514 6.514 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.446 0.554 32 H 0.191 0.809 33 H 0.412 0.588 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.352 0.648 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 35.693 2.943 36.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.236 5.236 3 C 0.310 3.690 4 O -0.251 6.251 5 N -0.332 5.332 6 C 0.124 3.876 7 C -0.362 4.362 8 C 0.371 3.629 9 O -0.429 6.429 10 N -0.377 5.377 11 C -0.004 4.004 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.081 4.081 15 C 0.227 3.773 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C 0.355 3.645 27 O -0.391 6.391 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.309 0.691 32 H 0.208 0.792 33 H 0.256 0.744 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.187 35.350 2.304 36.359 hybrid contribution -1.165 -1.079 0.809 1.782 sum -9.352 34.272 3.112 35.661 Atomic orbital electron populations 1.22308 0.75349 1.05457 1.05495 1.46391 1.11304 1.05027 1.60837 1.20372 0.85128 0.81582 0.81961 1.84145 1.39310 1.14890 1.86776 1.68561 1.00479 1.31843 1.32299 1.23121 1.00930 0.84647 0.78900 1.21620 0.91896 0.97082 1.25595 1.17041 0.86620 0.82568 0.76651 1.90818 1.13356 1.87285 1.51430 1.46322 1.12428 1.05569 1.73423 1.21266 0.93941 0.82171 1.03034 1.22058 0.95303 0.89716 1.00915 1.59951 1.19109 0.99875 1.50875 1.21672 0.94841 0.90215 1.01362 1.19797 0.88796 0.84253 0.84481 1.90530 1.14232 1.86273 1.55517 1.41855 1.09408 1.04837 1.64011 1.19722 0.92728 0.83433 1.46956 0.87885 1.25264 0.95988 0.99357 0.97389 1.69619 1.08334 1.25905 1.50549 0.85845 0.79565 0.80537 0.78263 1.20455 1.20960 1.19392 1.17061 0.87735 0.82027 0.77682 1.90697 1.69834 1.26539 1.51990 0.87910 0.89075 0.89111 0.69057 0.79181 0.74364 0.90263 0.91336 0.94919 0.90505 0.82878 0.93723 0.89476 0.77452 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.18 10.10 59.85 0.60 0.78 16 2 N -0.51 -3.04 2.99 -128.29 -0.38 -3.42 16 3 C 0.61 2.63 8.60 -88.68 -0.76 1.87 16 4 O -0.45 -0.20 11.91 -15.83 -0.19 -0.38 16 5 N -0.59 -3.32 10.31 -13.97 -0.14 -3.46 16 6 C 0.27 2.06 10.83 -16.79 -0.18 1.88 16 7 C -0.35 -3.58 5.93 -104.44 -0.62 -4.20 16 8 C 0.58 7.88 7.73 -12.76 -0.10 7.78 16 9 O -0.55 -8.79 16.42 5.22 0.09 -8.71 16 10 N -0.72 -9.47 5.48 -61.55 -0.34 -9.80 16 11 C 0.12 1.67 5.94 -4.04 -0.02 1.64 16 12 C 0.05 0.69 5.80 -3.83 -0.02 0.67 16 13 N -0.66 -11.54 6.13 -115.06 -0.70 -12.24 16 14 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 15 C 0.44 10.81 7.82 -10.98 -0.09 10.72 16 16 O -0.58 -16.35 15.78 5.55 0.09 -16.26 16 17 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 18 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 19 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 22 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.55 5.25 7.47 -14.64 -0.11 5.14 16 27 O -0.51 -5.94 13.90 5.07 0.07 -5.87 16 28 H 0.10 0.10 6.77 -51.93 -0.35 -0.25 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.45 -1.78 9.08 45.56 0.41 -1.37 16 32 H 0.19 1.26 7.70 -52.49 -0.40 0.85 16 33 H 0.41 5.24 5.14 -40.82 -0.21 5.03 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.35 6.24 8.43 -39.29 -0.33 5.91 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -37.80 369.31 -5.98 -43.78 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -4.10 Total: 14.37 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: -1.57 Total: 19.02 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.90 Total: -67.96 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: 0.06 Total: -31.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.80 -5.98 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132242534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.038 kcal (2) G-P(sol) polarization free energy of solvation -37.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds