Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35652 * 119.95417 * 2 1 4 4 O 1.34690 * 119.11131 * 0.03563 * 3 2 1 5 5 N 1.31854 * 121.78096 * 180.02562 * 3 2 1 6 6 C 1.32568 * 121.60444 * 359.97438 * 5 3 2 7 7 C 1.39432 * 119.70488 * 0.02562 * 6 5 3 8 8 C 1.46893 * 120.82249 * 180.02562 * 7 6 5 9 9 O 1.21669 * 119.99984 * 5.72841 * 8 7 6 10 10 N 1.34780 * 120.00010 * 185.73177 * 8 7 6 11 11 C 1.46498 * 119.99753 * 175.15034 * 10 8 7 12 12 C 1.53001 * 109.46861 * 179.72445 * 11 10 8 13 13 N 1.46896 * 109.47075 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00164 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47404 * 179.97438 * 14 13 12 16 16 O 1.21293 * 119.99601 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99932 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99593 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00136 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99955 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99589 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46999 * 89.99544 * 22 20 18 24 24 H 1.48494 * 109.47413 * 209.99840 * 22 20 18 25 25 H 1.48506 * 109.47059 * 329.99938 * 22 20 18 26 26 C 1.35019 * 119.95678 * 180.30428 * 2 1 3 27 27 O 1.21833 * 120.76964 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47468 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47044 * 120.00438 * 1 2 3 30 30 H 1.08995 * 109.47325 * 240.00383 * 1 2 3 31 31 H 0.96700 * 117.00185 * 179.97438 * 4 3 2 32 32 H 1.08002 * 120.14485 * 180.02562 * 6 5 3 33 33 H 0.96998 * 119.99562 * 354.86614 * 10 8 7 34 34 H 1.09003 * 109.46754 * 299.72139 * 11 10 8 35 35 H 1.08998 * 109.47376 * 59.71746 * 11 10 8 36 36 H 1.09003 * 109.46758 * 299.99751 * 12 11 10 37 37 H 1.08993 * 109.47435 * 59.99861 * 12 11 10 38 38 H 1.00907 * 111.00010 * 56.04197 * 13 12 11 39 39 H 1.09002 * 109.47217 * 299.99893 * 14 13 12 40 40 H 1.08996 * 109.47134 * 59.99912 * 14 13 12 41 41 H 0.97000 * 119.99907 * 0.02562 * 17 15 14 42 42 H 0.97003 * 119.99806 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1753 0.0000 4 8 1.4499 2.3306 0.0007 5 7 3.4602 1.2174 -0.0005 6 6 4.1905 0.1110 -0.0005 7 6 3.5605 -1.1328 -0.0006 8 6 4.3457 -2.3743 0.0000 9 8 5.5569 -2.3280 0.1056 10 7 3.7245 -3.5647 -0.1166 11 6 4.5127 -4.7949 -0.2230 12 6 3.5712 -5.9956 -0.3368 13 7 4.3615 -7.2291 -0.4441 14 6 3.4889 -8.4056 -0.5547 15 6 4.3333 -9.6491 -0.6633 16 8 5.5431 -9.5636 -0.6494 17 7 3.7441 -10.8561 -0.7747 18 6 4.5123 -11.9874 -0.8730 19 1 5.5896 -11.9113 -0.8606 20 6 3.9050 -13.2318 -0.9885 21 7 2.5942 -13.3243 -1.0030 22 14 4.9516 -14.7733 -1.1216 23 1 5.2213 -15.3073 0.2375 24 1 4.2286 -15.7951 -1.9205 25 1 6.2371 -14.4428 -1.7877 26 6 2.1392 -1.1698 -0.0062 27 8 1.5435 -2.2325 -0.0114 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5137 0.8900 31 1 1.9633 3.1501 0.0011 32 1 5.2688 0.1729 -0.0005 33 1 2.7554 -3.6071 -0.1259 34 1 5.1464 -4.7449 -1.1085 35 1 5.1363 -4.9048 0.6642 36 1 2.9375 -6.0455 0.5487 37 1 2.9477 -5.8856 -1.2240 38 1 4.9954 -7.3214 0.3356 39 1 2.8552 -8.4723 0.3297 40 1 2.8642 -8.3123 -1.4430 41 1 2.7765 -10.9244 -0.7855 42 1 2.1701 -14.1930 -1.0832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132242534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -124.795275 kcal Electronic energy + Delta-G solvation = -27801.654657 eV Core-core repulsion = 23395.792999 eV Total energy + Delta-G solvation = -4405.861658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.18481 -40.74213 -40.16740 -39.76401 -38.12961 -37.40801 -36.41870 -35.97986 -35.07833 -33.27502 -32.13405 -30.39953 -29.07609 -27.78226 -26.26320 -25.40399 -24.78506 -23.13630 -22.15042 -21.11179 -20.52709 -20.01808 -19.92032 -18.95777 -18.09046 -17.81533 -17.31916 -17.19309 -17.11543 -16.82580 -16.52501 -16.21636 -15.91958 -15.74052 -15.56698 -15.28525 -15.26597 -14.85271 -14.52598 -14.38961 -14.27717 -13.98415 -13.54245 -13.50441 -13.33099 -13.14376 -12.93076 -12.62505 -12.44800 -12.41056 -12.11708 -11.93486 -11.51242 -11.44432 -11.43695 -11.07269 -10.37645 -10.15519 -10.02204 -9.64872 -9.42478 -8.46936 -5.95874 -0.79280 0.51535 0.59443 1.38321 1.42029 1.55207 1.59929 2.03830 2.09619 2.18224 2.31521 2.53085 2.99804 3.01949 3.20028 3.21057 3.54270 3.79082 3.89059 4.06183 4.13385 4.18678 4.30577 4.32191 4.43911 4.47638 4.52009 4.58631 4.72628 4.83065 4.87450 4.91475 5.11111 5.40710 5.43745 5.81791 5.94211 6.05170 6.30145 6.32872 6.51732 6.59464 6.64726 7.11955 7.25113 7.55009 8.10553 8.70461 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032157 B = 0.001574 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.507716 B =17790.326009 C =18618.713296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.509 5.509 3 C 0.625 3.375 4 O -0.431 6.431 5 N -0.589 5.589 6 C 0.295 3.705 7 C -0.388 4.388 8 C 0.580 3.420 9 O -0.586 6.586 10 N -0.716 5.716 11 C 0.127 3.873 12 C 0.061 3.939 13 N -0.681 5.681 14 C 0.066 3.934 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.554 3.446 27 O -0.543 6.543 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.468 0.532 32 H 0.197 0.803 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.347 0.653 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 37.688 3.018 39.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.235 5.235 3 C 0.328 3.672 4 O -0.232 6.232 5 N -0.330 5.330 6 C 0.145 3.855 7 C -0.399 4.399 8 C 0.369 3.631 9 O -0.469 6.469 10 N -0.376 5.376 11 C 0.002 3.998 12 C -0.069 4.069 13 N -0.314 5.314 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.199 1.199 26 C 0.356 3.644 27 O -0.422 6.422 28 H 0.149 0.851 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.336 0.664 32 H 0.214 0.786 33 H 0.261 0.739 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.231 0.769 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.086 37.445 2.378 38.853 hybrid contribution -0.683 -1.444 0.790 1.782 sum -10.768 36.001 3.168 37.710 Atomic orbital electron populations 1.22535 0.73540 1.07285 1.05485 1.46274 1.12366 1.04660 1.60223 1.20466 0.84718 0.82328 0.79699 1.84184 1.39013 1.14635 1.85328 1.68673 1.01068 1.30546 1.32690 1.23250 1.01455 0.84293 0.76453 1.21327 0.92387 0.96336 1.29867 1.17533 0.86502 0.83483 0.75604 1.90779 1.14887 1.87885 1.53336 1.46321 1.12478 1.05356 1.73451 1.21079 0.93907 0.82885 1.01921 1.22003 0.94908 0.87869 1.02079 1.59926 1.19712 1.00620 1.51108 1.21542 0.94020 0.87600 1.03464 1.20837 0.88894 0.85443 0.82404 1.90498 1.16463 1.87104 1.56916 1.41910 1.09465 1.05010 1.64500 1.19693 0.92130 0.85202 1.49565 0.90333 1.26058 0.97280 1.01691 0.96208 1.69676 1.09309 1.27039 1.50014 0.84903 0.77778 0.76881 0.78607 1.19561 1.19428 1.19876 1.16913 0.87529 0.82594 0.77410 1.90653 1.70317 1.27782 1.53483 0.85099 0.89170 0.89170 0.66427 0.78583 0.73940 0.91806 0.92179 0.93309 0.89501 0.83419 0.91109 0.87452 0.76879 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 10.10 127.77 1.29 1.51 16 2 N -0.51 -5.11 2.99 -789.43 -2.36 -7.47 16 3 C 0.63 3.62 8.60 179.67 1.55 5.16 16 4 O -0.43 1.40 11.91 -79.55 -0.95 0.46 16 5 N -0.59 -5.26 10.31 -311.73 -3.21 -8.47 16 6 C 0.29 4.22 10.83 84.87 0.92 5.14 16 7 C -0.39 -7.90 5.93 -19.75 -0.12 -8.02 16 8 C 0.58 16.17 7.73 86.51 0.67 16.84 16 9 O -0.59 -19.60 16.42 -4.25 -0.07 -19.67 16 10 N -0.72 -19.36 5.48 -466.87 -2.56 -21.92 16 11 C 0.13 3.61 5.94 86.38 0.51 4.12 16 12 C 0.06 1.64 5.80 86.30 0.50 2.14 16 13 N -0.68 -23.44 6.13 -517.95 -3.17 -26.61 16 14 C 0.07 2.38 6.17 85.56 0.53 2.91 16 15 C 0.44 21.66 7.82 87.66 0.69 22.34 16 16 O -0.62 -36.05 15.78 -3.07 -0.05 -36.10 16 17 N -0.57 -30.22 5.29 -306.97 -1.62 -31.85 16 18 C -0.34 -19.63 9.68 84.04 0.81 -18.82 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.40 13.05 21.66 0.28 -50.11 16 22 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.55 10.20 7.47 85.18 0.64 10.84 16 27 O -0.54 -12.51 13.90 -4.78 -0.07 -12.57 16 28 H 0.13 -0.22 6.77 -2.39 -0.02 -0.23 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.47 -5.82 9.08 -74.06 -0.67 -6.50 16 32 H 0.20 2.49 7.70 -2.91 -0.02 2.47 16 33 H 0.42 10.68 5.14 -92.71 -0.48 10.21 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.35 12.48 8.43 -89.69 -0.76 11.73 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.40 19.82 7.90 -92.71 -0.73 19.08 16 42 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -83.81 369.31 -4.80 -88.62 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -1.50 Total: 35.90 kcal Atomic # 6 Polarization: 35.50 SS G_CDS: 8.45 Total: 43.95 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -12.65 Total: -146.44 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: -1.13 Total: -67.90 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -83.81 -4.80 -88.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132242534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.179 kcal (2) G-P(sol) polarization free energy of solvation -83.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds