Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34946 * 119.71216 * 2 1 4 4 C 1.38324 * 119.02163 * 180.02562 * 3 2 1 5 5 C 1.47301 * 120.73571 * 179.97438 * 4 3 2 6 6 O 1.21623 * 120.00406 * 174.68746 * 5 4 3 7 7 N 1.34782 * 119.99927 * 354.68897 * 5 4 3 8 8 C 1.46504 * 119.99829 * 185.10489 * 7 5 4 9 9 C 1.52993 * 109.46947 * 179.97438 * 8 7 5 10 10 N 1.46905 * 109.47145 * 179.97438 * 9 8 7 11 11 C 1.46906 * 111.00065 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46894 * 179.97438 * 11 10 9 13 13 O 1.21294 * 120.00218 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99461 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99518 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00148 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00047 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00201 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47159 * 60.00545 * 19 17 15 21 21 H 1.48507 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47117 * 300.00219 * 19 17 15 23 23 C 1.42090 * 118.52876 * 0.02562 * 4 3 2 24 24 O 1.35011 * 120.33668 * 179.97438 * 23 4 3 25 25 N 1.32225 * 119.33134 * 0.02562 * 23 4 3 26 26 C 1.33315 * 120.93069 * 359.97438 * 25 23 4 27 27 O 1.21910 * 119.20215 * 180.02562 * 26 25 23 28 28 H 1.09001 * 109.47244 * 90.00023 * 1 2 3 29 29 H 1.08996 * 109.47839 * 210.00991 * 1 2 3 30 30 H 1.08999 * 109.46774 * 330.00604 * 1 2 3 31 31 H 1.08004 * 120.48655 * 359.71613 * 3 2 1 32 32 H 0.96992 * 119.99812 * 5.10379 * 7 5 4 33 33 H 1.09001 * 109.47118 * 299.99994 * 8 7 5 34 34 H 1.08996 * 109.47437 * 59.99605 * 8 7 5 35 35 H 1.09001 * 109.47377 * 300.00044 * 9 8 7 36 36 H 1.09009 * 109.47453 * 59.99773 * 9 8 7 37 37 H 1.00897 * 111.00072 * 56.04943 * 10 9 8 38 38 H 1.08997 * 109.46962 * 300.00373 * 11 10 9 39 39 H 1.09001 * 109.47100 * 59.99572 * 11 10 9 40 40 H 0.97001 * 120.00289 * 0.02562 * 14 12 11 41 41 H 0.97006 * 119.99805 * 180.02562 * 18 17 15 42 42 H 0.96699 * 114.00381 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1338 1.1720 0.0000 4 6 3.5170 1.1554 -0.0005 5 6 4.2850 2.4123 -0.0011 6 8 5.4970 2.3845 0.0959 7 7 3.6446 3.5933 -0.1092 8 6 4.4129 4.8356 -0.2224 9 6 3.4522 6.0212 -0.3316 10 7 4.2226 7.2669 -0.4446 11 6 3.3310 8.4295 -0.5522 12 6 4.1553 9.6859 -0.6654 13 8 5.3664 9.6195 -0.6577 14 7 3.5467 10.8834 -0.7763 15 6 4.2966 12.0265 -0.8787 16 1 5.3750 11.9674 -0.8710 17 6 3.6693 13.2610 -0.9936 18 7 2.3572 13.3328 -1.0035 19 14 4.6910 14.8186 -1.1324 20 1 5.5517 14.7400 -2.3400 21 1 3.7897 15.9937 -1.2421 22 1 5.5438 14.9604 0.0750 23 6 4.1805 -0.1011 -0.0016 24 8 5.5293 -0.1599 -0.0027 25 7 3.4636 -1.2121 -0.0026 26 6 2.1312 -1.1680 -0.0021 27 8 1.5015 -2.2118 -0.0026 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.5971 2.1092 -0.0046 32 1 2.6750 3.6207 -0.1120 33 1 5.0407 4.9562 0.6605 34 1 5.0413 4.7944 -1.1121 35 1 2.8247 5.9003 -1.2147 36 1 2.8235 6.0626 0.5579 37 1 4.8610 7.2278 -1.2249 38 1 2.7033 8.3252 -1.4372 39 1 2.7008 8.4874 0.3353 40 1 2.5782 10.9365 -0.7828 41 1 1.9192 14.1946 -1.0840 42 1 5.8838 -1.0596 -0.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150978641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -87.446667 kcal Electronic energy + Delta-G solvation = -27619.105216 eV Core-core repulsion = 23214.863115 eV Total energy + Delta-G solvation = -4404.242101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50152 -40.05669 -39.02285 -38.36388 -37.37978 -36.37357 -35.23166 -34.51876 -33.82911 -32.23769 -31.27550 -29.35542 -28.27885 -26.20784 -25.66435 -24.45575 -23.68164 -22.27085 -21.37670 -20.34951 -19.37297 -18.85534 -18.59426 -17.93691 -17.30315 -16.82549 -16.36837 -16.24368 -15.92309 -15.77075 -15.37177 -15.27598 -14.94811 -14.59027 -14.35329 -14.20082 -14.03655 -13.90952 -13.78793 -13.48377 -13.34608 -13.22963 -12.53228 -12.21403 -11.99734 -11.59391 -11.54410 -11.50814 -11.50001 -11.04780 -10.69184 -10.66609 -10.47235 -10.26383 -10.23281 -9.54437 -9.48579 -9.22068 -8.56798 -8.20226 -8.01225 -6.46206 -3.87119 -0.14496 0.67367 1.64155 2.50846 2.59867 2.64289 3.17495 3.20978 3.23536 3.28049 3.39492 3.61890 3.84785 4.00678 4.10089 4.28042 4.32721 4.45451 4.51410 4.60226 4.77605 4.88600 4.90297 5.10693 5.20877 5.21448 5.27418 5.54744 5.64536 5.72110 5.81842 5.87041 6.00973 6.19006 6.60736 6.97382 7.05986 7.13442 7.48643 7.51148 7.51308 7.82777 8.01208 8.56040 9.13298 9.48789 10.00051 10.71332 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.001547 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.263084 B =18099.594559 C =19053.161872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.518 5.518 3 C 0.243 3.757 4 C -0.295 4.295 5 C 0.578 3.422 6 O -0.506 6.506 7 N -0.729 5.729 8 C 0.122 3.878 9 C 0.049 3.951 10 N -0.665 5.665 11 C 0.053 3.947 12 C 0.439 3.561 13 O -0.582 6.582 14 N -0.562 5.562 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.495 3.505 24 O -0.411 6.411 25 N -0.614 5.614 26 C 0.654 3.346 27 O -0.523 6.523 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.188 0.812 32 H 0.393 0.607 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -24.748 1.243 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.231 5.231 3 C 0.102 3.898 4 C -0.308 4.308 5 C 0.363 3.637 6 O -0.381 6.381 7 N -0.383 5.383 8 C -0.001 4.001 9 C -0.081 4.081 10 N -0.299 5.299 11 C -0.080 4.080 12 C 0.224 3.776 13 O -0.466 6.466 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.293 3.707 24 O -0.202 6.202 25 N -0.372 5.372 26 C 0.355 3.645 27 O -0.397 6.397 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.205 0.795 32 H 0.227 0.773 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.812 -25.544 1.960 26.509 hybrid contribution -1.305 1.036 -0.992 1.939 sum -8.117 -24.508 0.968 25.836 Atomic orbital electron populations 1.22385 0.75219 1.06060 1.04999 1.46313 1.11152 1.07118 1.58515 1.22857 0.91746 0.91412 0.83807 1.19729 0.91761 0.94231 1.25044 1.17193 0.87226 0.82040 0.77288 1.90908 1.12870 1.86479 1.47814 1.45741 1.09888 1.06414 1.76218 1.21326 0.94131 0.80934 1.03756 1.22088 0.95403 0.89642 1.01009 1.59935 1.18784 0.99874 1.51258 1.21669 0.94685 0.90513 1.01127 1.19768 0.88722 0.84430 0.84689 1.90540 1.14031 1.86444 1.55570 1.41848 1.09350 1.04925 1.63779 1.19668 0.92875 0.83283 1.47207 0.87909 1.25264 0.95916 0.99467 0.97233 1.69602 1.07790 1.26680 1.50256 0.85905 0.79036 0.80085 0.79132 1.19890 1.20976 1.19844 1.20195 0.85016 0.88025 0.77455 1.85278 1.13928 1.36496 1.84534 1.69763 1.05426 1.27196 1.34849 1.17478 0.84758 0.82990 0.79224 1.91015 1.65877 1.29930 1.52851 0.89528 0.87841 0.88750 0.79502 0.77322 0.89714 0.91017 0.94920 0.90437 0.82704 0.93711 0.89464 0.77467 0.91799 0.72863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.11 10.35 59.85 0.62 0.73 16 2 N -0.52 -2.79 2.96 -128.87 -0.38 -3.17 16 3 C 0.24 0.82 9.90 -16.15 -0.16 0.66 16 4 C -0.29 -2.07 5.90 -104.70 -0.62 -2.69 16 5 C 0.58 5.26 7.75 -12.57 -0.10 5.16 16 6 O -0.51 -6.93 15.32 -15.91 -0.24 -7.18 16 7 N -0.73 -4.71 5.51 -61.42 -0.34 -5.04 16 8 C 0.12 1.11 5.94 -4.04 -0.02 1.09 16 9 C 0.05 0.44 5.80 -3.83 -0.02 0.42 16 10 N -0.67 -9.46 6.13 -115.05 -0.70 -10.16 16 11 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 12 C 0.44 9.89 7.82 -10.98 -0.09 9.80 16 13 O -0.58 -15.36 15.78 5.55 0.09 -15.27 16 14 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 15 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 19 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 C 0.50 4.37 7.93 -15.91 -0.13 4.24 16 24 O -0.41 -3.43 11.78 -37.91 -0.45 -3.87 16 25 N -0.61 -6.40 10.38 -16.47 -0.17 -6.57 16 26 C 0.65 6.77 8.32 -88.50 -0.74 6.03 16 27 O -0.52 -7.15 16.67 5.00 0.08 -7.07 16 28 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 0.36 7.36 -51.93 -0.38 -0.02 16 30 H 0.09 -0.14 8.02 -51.93 -0.42 -0.56 16 31 H 0.19 -0.32 6.48 -52.48 -0.34 -0.66 16 32 H 0.39 0.96 6.58 -40.82 -0.27 0.69 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.35 5.27 8.43 -39.29 -0.33 4.94 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.41 1.60 8.98 45.56 0.41 2.01 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -40.41 370.99 -6.52 -46.93 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.12 Total: 8.74 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: -1.52 Total: 18.41 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.93 Total: -61.89 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.52 Total: -33.39 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.41 -6.52 -46.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150978641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.515 kcal (2) G-P(sol) polarization free energy of solvation -40.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds