Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34946 * 119.71216 * 2 1 4 4 C 1.38324 * 119.02163 * 180.02562 * 3 2 1 5 5 C 1.47301 * 120.73571 * 179.97438 * 4 3 2 6 6 O 1.21623 * 120.00406 * 174.68746 * 5 4 3 7 7 N 1.34782 * 119.99927 * 354.68897 * 5 4 3 8 8 C 1.46504 * 119.99829 * 185.10489 * 7 5 4 9 9 C 1.52993 * 109.46947 * 179.97438 * 8 7 5 10 10 N 1.46905 * 109.47145 * 179.97438 * 9 8 7 11 11 C 1.46906 * 111.00065 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46894 * 179.97438 * 11 10 9 13 13 O 1.21294 * 120.00218 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99461 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99518 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00148 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00047 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00201 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47159 * 60.00545 * 19 17 15 21 21 H 1.48507 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47117 * 300.00219 * 19 17 15 23 23 C 1.42090 * 118.52876 * 0.02562 * 4 3 2 24 24 O 1.35011 * 120.33668 * 179.97438 * 23 4 3 25 25 N 1.32225 * 119.33134 * 0.02562 * 23 4 3 26 26 C 1.33315 * 120.93069 * 359.97438 * 25 23 4 27 27 O 1.21910 * 119.20215 * 180.02562 * 26 25 23 28 28 H 1.09001 * 109.47244 * 90.00023 * 1 2 3 29 29 H 1.08996 * 109.47839 * 210.00991 * 1 2 3 30 30 H 1.08999 * 109.46774 * 330.00604 * 1 2 3 31 31 H 1.08004 * 120.48655 * 359.71613 * 3 2 1 32 32 H 0.96992 * 119.99812 * 5.10379 * 7 5 4 33 33 H 1.09001 * 109.47118 * 299.99994 * 8 7 5 34 34 H 1.08996 * 109.47437 * 59.99605 * 8 7 5 35 35 H 1.09001 * 109.47377 * 300.00044 * 9 8 7 36 36 H 1.09009 * 109.47453 * 59.99773 * 9 8 7 37 37 H 1.00897 * 111.00072 * 56.04943 * 10 9 8 38 38 H 1.08997 * 109.46962 * 300.00373 * 11 10 9 39 39 H 1.09001 * 109.47100 * 59.99572 * 11 10 9 40 40 H 0.97001 * 120.00289 * 0.02562 * 14 12 11 41 41 H 0.97006 * 119.99805 * 180.02562 * 18 17 15 42 42 H 0.96699 * 114.00381 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1338 1.1720 0.0000 4 6 3.5170 1.1554 -0.0005 5 6 4.2850 2.4123 -0.0011 6 8 5.4970 2.3845 0.0959 7 7 3.6446 3.5933 -0.1092 8 6 4.4129 4.8356 -0.2224 9 6 3.4522 6.0212 -0.3316 10 7 4.2226 7.2669 -0.4446 11 6 3.3310 8.4295 -0.5522 12 6 4.1553 9.6859 -0.6654 13 8 5.3664 9.6195 -0.6577 14 7 3.5467 10.8834 -0.7763 15 6 4.2966 12.0265 -0.8787 16 1 5.3750 11.9674 -0.8710 17 6 3.6693 13.2610 -0.9936 18 7 2.3572 13.3328 -1.0035 19 14 4.6910 14.8186 -1.1324 20 1 5.5517 14.7400 -2.3400 21 1 3.7897 15.9937 -1.2421 22 1 5.5438 14.9604 0.0750 23 6 4.1805 -0.1011 -0.0016 24 8 5.5293 -0.1599 -0.0027 25 7 3.4636 -1.2121 -0.0026 26 6 2.1312 -1.1680 -0.0021 27 8 1.5015 -2.2118 -0.0026 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.5971 2.1092 -0.0046 32 1 2.6750 3.6207 -0.1120 33 1 5.0407 4.9562 0.6605 34 1 5.0413 4.7944 -1.1121 35 1 2.8247 5.9003 -1.2147 36 1 2.8235 6.0626 0.5579 37 1 4.8610 7.2278 -1.2249 38 1 2.7033 8.3252 -1.4372 39 1 2.7008 8.4874 0.3353 40 1 2.5782 10.9365 -0.7828 41 1 1.9192 14.1946 -1.0840 42 1 5.8838 -1.0596 -0.0038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150978641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -127.219598 kcal Electronic energy + Delta-G solvation = -27620.829900 eV Core-core repulsion = 23214.863115 eV Total energy + Delta-G solvation = -4405.966785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.07796 -40.75872 -40.10952 -39.63441 -38.07801 -37.37499 -35.96254 -35.80345 -35.21473 -33.25003 -32.86230 -30.30598 -28.61773 -27.64006 -26.20114 -25.72637 -24.61924 -23.04058 -22.06069 -21.05731 -20.96086 -19.89537 -19.38622 -19.19043 -17.87101 -17.75719 -17.37091 -17.12054 -17.00352 -16.57920 -16.34546 -16.19416 -15.92541 -15.66815 -15.58109 -15.21449 -14.89878 -14.80717 -14.73647 -14.40530 -14.23899 -13.92795 -13.49815 -13.47537 -13.25400 -12.90797 -12.63996 -12.50863 -12.40566 -12.30032 -12.26967 -12.10867 -11.47713 -11.40157 -11.30659 -10.96547 -10.31942 -10.19736 -9.98392 -9.80523 -9.29235 -8.44457 -5.92537 -0.55235 0.01049 1.20819 1.41726 1.44110 1.54214 1.85538 1.92928 2.09715 2.12339 2.32285 2.57576 2.97093 3.05536 3.23548 3.31454 3.52379 3.67460 3.96987 4.02503 4.09530 4.20509 4.23927 4.37855 4.43961 4.55093 4.58881 4.69856 4.80665 4.87627 5.00170 5.05285 5.08767 5.35737 5.43643 5.90943 6.11811 6.12901 6.40511 6.45466 6.55113 6.63728 6.87555 7.15991 7.23644 7.60339 8.16366 8.72447 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.001547 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.263084 B =18099.594559 C =19053.161872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.509 5.509 3 C 0.285 3.715 4 C -0.319 4.319 5 C 0.582 3.418 6 O -0.562 6.562 7 N -0.706 5.706 8 C 0.130 3.870 9 C 0.057 3.943 10 N -0.689 5.689 11 C 0.070 3.930 12 C 0.434 3.566 13 O -0.626 6.626 14 N -0.573 5.573 15 C -0.335 4.335 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.918 5.918 19 Si 0.990 3.010 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.490 3.510 24 O -0.425 6.425 25 N -0.648 5.648 26 C 0.645 3.355 27 O -0.571 6.571 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.252 0.748 32 H 0.417 0.583 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.345 0.655 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.398 0.602 41 H 0.277 0.723 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 -23.750 1.164 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.219 5.219 3 C 0.142 3.858 4 C -0.331 4.331 5 C 0.368 3.632 6 O -0.441 6.441 7 N -0.361 5.361 8 C 0.005 3.995 9 C -0.072 4.072 10 N -0.322 5.322 11 C -0.063 4.063 12 C 0.221 3.779 13 O -0.513 6.513 14 N -0.210 5.210 15 C -0.465 4.465 16 H 0.095 0.905 17 C -0.211 4.211 18 N -0.559 5.559 19 Si 0.814 3.186 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.199 1.199 23 C 0.290 3.710 24 O -0.219 6.219 25 N -0.408 5.408 26 C 0.347 3.653 27 O -0.449 6.449 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.267 0.733 32 H 0.256 0.744 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.814 -24.537 1.883 26.494 hybrid contribution -0.416 0.674 -0.960 1.244 sum -10.230 -23.863 0.924 25.980 Atomic orbital electron populations 1.22770 0.72552 1.07538 1.06451 1.46286 1.12681 1.06392 1.56590 1.23642 0.90418 0.92487 0.79231 1.19562 0.93241 0.92437 1.27902 1.17393 0.86639 0.82945 0.76197 1.90888 1.15402 1.87242 1.50536 1.45398 1.10955 1.04714 1.75026 1.21060 0.94283 0.82159 1.01987 1.22118 0.94974 0.86821 1.03311 1.59895 1.19633 1.01419 1.51297 1.21518 0.93810 0.87423 1.03512 1.21048 0.88850 0.85902 0.82059 1.90511 1.16528 1.87406 1.56862 1.41915 1.09437 1.05084 1.64599 1.19614 0.92229 0.85209 1.49430 0.90505 1.25973 0.97052 1.01672 0.96389 1.69651 1.08574 1.27594 1.50105 0.85034 0.77801 0.76941 0.78839 1.19817 1.19492 1.19920 1.20437 0.84953 0.88545 0.77076 1.85270 1.14280 1.37874 1.84454 1.69612 1.06203 1.28551 1.36434 1.17572 0.84777 0.83860 0.79069 1.90974 1.66688 1.31950 1.55279 0.88105 0.89848 0.83839 0.73250 0.74434 0.92288 0.92422 0.91865 0.88324 0.83623 0.90731 0.87119 0.76806 0.91317 0.71399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.01 10.35 127.77 1.32 1.33 16 2 N -0.51 -4.01 2.96 -679.95 -2.01 -6.02 16 3 C 0.28 0.67 9.90 84.23 0.83 1.50 16 4 C -0.32 -3.86 5.90 -19.92 -0.12 -3.97 16 5 C 0.58 9.64 7.75 86.63 0.67 10.31 16 6 O -0.56 -15.62 15.32 16.13 0.25 -15.37 16 7 N -0.71 -6.65 5.51 -466.49 -2.57 -9.22 16 8 C 0.13 2.09 5.94 86.38 0.51 2.61 16 9 C 0.06 0.80 5.80 86.30 0.50 1.30 16 10 N -0.69 -17.99 6.13 -517.91 -3.17 -21.17 16 11 C 0.07 1.99 6.17 85.56 0.53 2.52 16 12 C 0.43 19.34 7.82 87.66 0.69 20.02 16 13 O -0.63 -33.62 15.78 -3.07 -0.05 -33.67 16 14 N -0.57 -27.90 5.29 -306.98 -1.62 -29.53 16 15 C -0.34 -18.52 9.68 84.04 0.81 -17.71 16 16 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 17 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 18 N -0.92 -47.79 13.05 21.66 0.28 -47.51 16 19 Si 0.99 41.92 29.55 68.60 2.03 43.95 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.49 8.72 7.93 85.59 0.68 9.39 16 24 O -0.43 -7.60 11.78 -62.59 -0.74 -8.34 16 25 N -0.65 -13.89 10.38 -438.20 -4.55 -18.44 16 26 C 0.65 13.18 8.32 179.61 1.49 14.67 16 27 O -0.57 -16.11 16.67 -5.02 -0.08 -16.20 16 28 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.08 0.45 7.36 -2.39 -0.02 0.43 16 30 H 0.14 -1.36 8.02 -2.39 -0.02 -1.38 16 31 H 0.25 -2.80 6.48 -2.91 -0.02 -2.82 16 32 H 0.42 -0.44 6.58 -92.71 -0.61 -1.05 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.35 9.92 8.43 -89.70 -0.76 9.16 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.40 18.07 7.90 -92.71 -0.73 17.34 16 41 H 0.28 13.57 8.31 -92.70 -0.77 12.79 16 42 H 0.43 4.03 8.98 -74.06 -0.67 3.36 16 Total: -1.00 -95.31 370.99 -5.48 -100.79 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -1.63 Total: 18.84 kcal Atomic # 6 Polarization: 33.49 SS G_CDS: 8.39 Total: 41.88 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -13.64 Total: -131.88 kcal Atomic # 8 Polarization: -72.95 SS G_CDS: -0.62 Total: -73.57 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -95.31 -5.48 -100.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150978641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.433 kcal (2) G-P(sol) polarization free energy of solvation -95.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds