Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35665 * 116.99550 * 2 1 4 4 C 1.38037 * 120.21544 * 0.02562 * 3 2 1 5 5 C 1.39220 * 119.98547 * 179.97438 * 4 3 2 6 6 N 1.38920 * 119.80112 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00154 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46971 * 179.97438 * 7 6 5 9 9 C 1.52578 * 109.24381 * 295.55761 * 8 7 6 10 10 C 1.53050 * 109.97846 * 169.67753 * 9 8 7 11 11 S 1.81671 * 108.96838 * 63.70208 * 10 9 8 12 12 O 1.42101 * 108.66553 * 191.35657 * 11 10 9 13 13 O 1.42100 * 108.74638 * 60.04653 * 11 10 9 14 14 C 1.81671 * 101.30795 * 305.68654 * 11 10 9 15 15 C 1.52594 * 109.23822 * 174.43997 * 8 7 6 16 16 C 1.39717 * 120.40043 * 0.02562 * 5 4 3 17 17 C 1.36224 * 120.43188 * 359.72738 * 16 5 4 18 18 C 1.40853 * 120.00811 * 0.53043 * 17 16 5 19 19 C 1.40969 * 120.20063 * 179.75548 * 18 17 16 20 20 H 1.07998 * 120.00067 * 205.28297 * 19 18 17 21 21 C 1.39844 * 120.00012 * 25.28760 * 19 18 17 22 22 N 1.30955 * 119.99833 * 17.42813 * 21 19 18 23 23 Si 1.86800 * 120.00138 * 197.43140 * 21 19 18 24 24 H 1.48505 * 109.46945 * 265.19164 * 23 21 19 25 25 H 1.48501 * 109.47023 * 25.18886 * 23 21 19 26 26 H 1.48501 * 109.47119 * 145.19168 * 23 21 19 27 27 H 1.09006 * 109.46608 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47595 * 299.99720 * 1 2 3 29 29 H 1.08996 * 109.47196 * 60.00323 * 1 2 3 30 30 H 1.08003 * 120.01002 * 359.94837 * 4 3 2 31 31 H 0.97004 * 119.99471 * 359.97438 * 6 5 4 32 32 H 1.09000 * 109.46776 * 299.99864 * 7 6 5 33 33 H 1.09001 * 109.46910 * 60.00157 * 7 6 5 34 34 H 1.09001 * 109.23459 * 55.00580 * 8 7 6 35 35 H 1.09001 * 109.38723 * 289.87399 * 9 8 7 36 36 H 1.08997 * 109.38979 * 49.55555 * 9 8 7 37 37 H 1.09000 * 109.58089 * 303.85070 * 10 9 8 38 38 H 1.08996 * 109.63279 * 183.59179 * 10 9 8 39 39 H 1.08999 * 109.54724 * 294.43795 * 14 11 10 40 40 H 1.08997 * 109.62627 * 174.20135 * 14 11 10 41 41 H 1.09005 * 109.38510 * 310.44304 * 15 8 7 42 42 H 1.08993 * 109.38469 * 70.23456 * 15 8 7 43 43 H 1.08004 * 119.78288 * 180.02562 * 16 5 4 44 44 H 1.08008 * 119.99551 * 180.25761 * 17 16 5 45 45 H 0.97003 * 119.99577 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2973 2.3693 0.0005 5 6 1.9342 3.6072 0.0011 6 7 1.1781 4.7727 0.0011 7 6 1.8438 6.0777 0.0011 8 6 0.7905 7.1874 0.0004 9 6 -0.0060 7.1241 -1.2995 10 6 -1.2216 8.0500 -1.2136 11 16 -0.6468 9.7652 -1.0465 12 8 -1.7558 10.5852 -0.7042 13 8 0.1383 10.0966 -2.1836 14 6 0.4476 9.6351 0.3977 15 6 1.4843 8.5393 0.1400 16 6 3.3292 3.6846 0.0005 17 6 4.0832 2.5501 0.0051 18 6 3.4573 1.2883 -0.0010 19 6 4.2336 0.1116 -0.0015 20 1 3.8266 -0.8037 -0.4051 21 6 5.5308 0.1295 0.5207 22 7 5.9072 1.1080 1.3055 23 14 6.7265 -1.2423 0.0989 24 1 6.6885 -2.2768 1.1636 25 1 6.3413 -1.8531 -1.1987 26 1 8.1002 -0.6875 -0.0035 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2185 2.3169 0.0001 31 1 0.2094 4.7223 0.0003 32 1 2.4666 6.1678 0.8911 33 1 2.4666 6.1678 -0.8890 34 1 0.1148 7.0417 0.8433 35 1 0.6292 7.4359 -2.1286 36 1 -0.3422 6.1011 -1.4683 37 1 -1.8248 7.7814 -0.3463 38 1 -1.8208 7.9526 -2.1188 39 1 -0.1406 9.3807 1.2794 40 1 0.9548 10.5862 0.5596 41 1 2.1858 8.5016 0.9736 42 1 2.0259 8.7645 -0.7787 43 1 3.8130 4.6503 0.0014 44 1 5.1611 2.6181 0.0088 45 1 6.8069 1.1202 1.6680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168296081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -89.890404 kcal Electronic energy + Delta-G solvation = -27018.011994 eV Core-core repulsion = 23127.664388 eV Total energy + Delta-G solvation = -3890.347606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.02662 -38.39811 -37.25257 -36.43204 -36.32795 -34.57873 -32.72106 -32.21228 -29.99145 -28.86452 -28.02702 -26.50945 -24.62601 -24.16425 -23.37850 -21.22914 -20.63191 -19.93500 -19.17343 -17.39949 -17.30102 -16.71949 -16.66598 -16.07674 -15.91264 -15.10133 -14.95074 -14.74254 -14.62732 -14.46310 -14.11640 -13.89688 -13.79452 -13.54338 -13.26937 -12.84540 -12.72374 -12.44572 -12.31866 -12.24972 -12.15347 -11.78440 -11.77526 -11.44456 -11.31142 -11.23750 -11.07478 -11.00189 -10.88325 -10.64801 -10.46082 -10.36288 -10.22215 -9.74328 -9.55291 -9.13314 -8.44599 -7.16547 -6.64892 -6.42786 -3.95627 -0.31319 2.32059 2.88648 2.97806 3.17461 3.22758 3.30843 3.31498 3.54637 3.93329 4.09419 4.14938 4.23296 4.29719 4.42135 4.52744 4.62720 4.73330 4.75698 4.93230 5.05066 5.21704 5.35637 5.41965 5.49321 5.65021 5.68431 5.75354 5.76457 5.83980 5.93253 5.95498 6.04869 6.13144 6.36400 6.71511 6.95016 7.09009 7.32009 7.48491 7.71578 7.93183 8.08733 8.35331 8.50928 8.58509 8.82954 9.02198 9.19531 10.40575 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.002302 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.429176 B =12160.179204 C =13124.879411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.048 3.952 4 C -0.242 4.242 5 C 0.124 3.876 6 N -0.760 5.760 7 C 0.145 3.855 8 C -0.119 4.119 9 C -0.108 4.108 10 C -0.600 4.600 11 S 2.414 3.586 12 O -0.949 6.949 13 O -0.937 6.937 14 C -0.600 4.600 15 C -0.105 4.105 16 C -0.188 4.188 17 C -0.103 4.103 18 C 0.062 3.938 19 C -0.449 4.449 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.812 5.812 23 Si 0.903 3.097 24 H -0.274 1.274 25 H -0.263 1.263 26 H -0.279 1.279 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.383 0.617 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 13.397 -1.184 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C 0.003 3.997 4 C -0.265 4.265 5 C 0.026 3.974 6 N -0.397 5.397 7 C 0.020 3.980 8 C -0.138 4.138 9 C -0.147 4.147 10 C -0.730 4.730 11 S 2.596 3.404 12 O -0.946 6.946 13 O -0.934 6.934 14 C -0.730 4.730 15 C -0.144 4.144 16 C -0.210 4.210 17 C -0.123 4.123 18 C 0.059 3.941 19 C -0.481 4.481 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.440 5.440 23 Si 0.729 3.271 24 H -0.199 1.199 25 H -0.187 1.187 26 H -0.204 1.204 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.216 0.784 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.143 0.857 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.339 14.146 -1.564 17.591 hybrid contribution -0.030 -1.061 0.567 1.203 sum -10.369 13.086 -0.996 16.725 Atomic orbital electron populations 1.22709 0.81931 1.01616 0.99765 1.85998 1.18067 1.28285 1.90006 1.18982 0.92196 0.82124 1.06408 1.20039 0.97013 0.91526 1.17902 1.16989 0.90399 0.84575 1.05416 1.43874 1.06369 1.02110 1.87303 1.20989 0.93687 0.82144 1.01228 1.21562 0.98441 0.95348 0.98412 1.21391 0.93470 1.01199 0.98593 1.30216 1.08714 1.22265 1.11813 1.08146 0.76606 0.78038 0.77613 1.93589 1.51551 1.64788 1.84668 1.93595 1.70489 1.82037 1.47274 1.30202 1.14113 1.08284 1.20386 1.21283 0.97083 0.90863 1.05141 1.20018 0.91273 0.97788 1.11937 1.20702 0.99561 0.90270 1.01770 1.16936 0.87081 0.94081 0.96005 1.19208 0.97100 0.96649 1.35102 0.90513 1.25772 0.98804 0.96665 0.93035 1.69865 1.19209 1.31346 1.23617 0.86381 0.79427 0.81378 0.79938 1.19930 1.18688 1.20378 0.90141 0.94263 0.94358 0.88717 0.78395 0.92638 0.92663 0.89580 0.89396 0.88814 0.84944 0.84777 0.84898 0.84712 0.88878 0.89310 0.89145 0.85698 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.12 9.79 -18.70 -0.18 -7.30 16 3 C 0.05 1.18 6.71 -38.42 -0.26 0.92 16 4 C -0.24 -5.15 8.86 -39.29 -0.35 -5.49 16 5 C 0.12 2.49 6.66 -83.73 -0.56 1.94 16 6 N -0.76 -11.31 5.30 -58.53 -0.31 -11.62 16 7 C 0.14 1.73 4.25 -4.04 -0.02 1.71 16 8 C -0.12 -0.94 1.98 -91.04 -0.18 -1.12 16 9 C -0.11 -0.83 4.97 -26.92 -0.13 -0.96 16 10 C -0.60 -3.59 6.35 37.18 0.24 -3.36 16 11 S 2.41 18.66 5.30 -107.50 -0.57 18.09 16 12 O -0.95 -10.63 18.10 -57.82 -1.05 -11.67 16 13 O -0.94 -10.66 17.95 -57.82 -1.04 -11.69 16 14 C -0.60 -3.30 6.35 37.18 0.24 -3.07 16 15 C -0.11 -0.70 5.02 -26.92 -0.14 -0.84 16 16 C -0.19 -4.15 9.22 -39.75 -0.37 -4.51 16 17 C -0.10 -2.60 8.62 -39.32 -0.34 -2.94 16 18 C 0.06 1.67 5.58 -106.64 -0.59 1.07 16 19 C -0.45 -12.29 8.69 -37.95 -0.33 -12.62 16 20 H 0.08 2.10 7.66 -52.49 -0.40 1.70 16 21 C 0.07 1.84 5.14 -17.32 -0.09 1.75 16 22 N -0.81 -21.30 10.98 55.54 0.61 -20.69 16 23 Si 0.90 19.37 29.59 -169.99 -5.03 14.34 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 29 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.09 1.75 6.29 -52.48 -0.33 1.42 16 31 H 0.38 4.90 7.62 -40.82 -0.31 4.58 16 32 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 33 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 34 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.09 0.70 8.02 -51.93 -0.42 0.28 16 36 H 0.09 0.77 6.91 -51.93 -0.36 0.41 16 37 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.09 0.60 8.01 -51.93 -0.42 0.18 16 43 H 0.09 1.79 6.67 -52.48 -0.35 1.44 16 44 H 0.13 3.28 6.19 -52.48 -0.32 2.95 16 45 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -34.60 370.18 -10.49 -45.09 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.61 Total: 5.81 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -1.89 Total: -25.93 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.30 Total: -32.31 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -2.27 Total: -30.67 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 16 Polarization: 18.66 SS G_CDS: -0.57 Total: 18.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.60 -10.49 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168296081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.801 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds