Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.53039 * 109.46074 * 295.06704 * 9 8 7 11 11 C 1.53195 * 109.31121 * 178.61597 * 10 9 8 12 12 N 1.46928 * 108.77594 * 54.63750 * 11 10 9 13 13 S 1.65605 * 120.63050 * 126.40772 * 12 11 10 14 14 O 1.42106 * 106.40210 * 23.52174 * 13 12 11 15 15 O 1.42104 * 106.39998 * 156.43524 * 13 12 11 16 16 C 1.76195 * 107.22032 * 269.97747 * 13 12 11 17 17 H 1.07996 * 120.00122 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99973 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99846 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00102 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47107 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47558 * 120.00358 * 20 18 16 23 23 H 1.48508 * 109.46976 * 240.00363 * 20 18 16 24 24 C 1.46926 * 118.73928 * 306.38927 * 12 11 10 25 25 C 1.53048 * 109.45779 * 175.00115 * 9 8 7 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 34 34 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 35 35 H 1.08994 * 109.46292 * 55.03044 * 9 8 7 36 36 H 1.09005 * 109.49898 * 298.56870 * 10 9 8 37 37 H 1.08997 * 109.49669 * 58.66389 * 10 9 8 38 38 H 1.08990 * 109.58814 * 294.84618 * 11 10 9 39 39 H 1.09007 * 109.58488 * 174.42193 * 11 10 9 40 40 H 0.96996 * 119.99788 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58443 * 293.82482 * 24 12 11 42 42 H 1.08995 * 109.70496 * 173.46544 * 24 12 11 43 43 H 1.09002 * 109.49734 * 301.33480 * 25 9 8 44 44 H 1.08998 * 109.49760 * 61.43174 * 25 9 8 45 45 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 5.7329 1.2987 -2.1281 11 6 6.2123 1.3429 -3.5824 12 7 7.6410 1.6857 -3.5992 13 16 8.7292 0.7274 -4.3991 14 8 7.9914 0.0203 -5.3865 15 8 9.8431 1.5549 -4.7055 16 6 9.3058 -0.4780 -3.2506 17 1 8.9336 -0.4794 -2.2368 18 6 10.2314 -1.4201 -3.6465 19 7 10.6843 -1.4187 -4.8812 20 14 10.8422 -2.6985 -2.4291 21 1 10.1826 -2.4862 -1.1157 22 1 10.5161 -4.0569 -2.9324 23 1 12.3132 -2.5689 -2.2715 24 6 8.0857 2.8950 -2.8931 25 6 7.5852 2.8334 -1.4465 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8760 3.5065 0.5126 34 1 5.9718 1.7291 0.5125 35 1 5.5895 3.4432 -1.9822 36 1 6.2321 0.4830 -1.6050 37 1 4.6547 1.1403 -2.1051 38 1 5.6489 2.0982 -4.1301 39 1 6.0652 0.3671 -4.0455 40 1 11.3357 -2.0812 -5.1596 41 1 7.6749 3.7769 -3.3846 42 1 9.1744 2.9459 -2.9012 43 1 7.8254 3.7673 -0.9384 44 1 8.0670 2.0033 -0.9298 45 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192966294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -143.048754 kcal Electronic energy + Delta-G solvation = -27759.932046 eV Core-core repulsion = 23867.279321 eV Total energy + Delta-G solvation = -3892.652725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.13078 -39.73937 -38.29138 -37.46039 -36.13636 -35.26827 -34.90549 -32.15019 -31.65801 -31.19665 -28.26810 -28.24297 -27.59169 -24.23858 -24.05156 -23.28582 -21.80839 -21.20673 -20.28756 -19.21227 -18.59097 -18.26455 -17.12921 -17.03773 -16.84317 -16.61138 -16.59455 -16.00076 -15.52579 -15.25102 -15.16780 -15.04728 -14.78398 -14.50848 -14.32831 -14.00304 -13.85947 -13.54552 -13.30958 -13.18967 -13.03627 -12.79725 -12.72902 -12.51094 -12.42695 -12.38047 -12.33447 -12.30023 -12.03961 -11.92475 -11.72181 -11.65059 -11.27204 -11.17275 -11.14134 -10.89751 -9.75564 -9.62884 -9.06828 -8.74162 -7.47587 0.32805 0.43674 0.57251 1.31435 1.32353 1.50063 2.19841 2.43407 2.57280 2.84947 2.87005 3.76447 3.78781 3.87939 3.94523 3.97871 4.08282 4.19103 4.30829 4.33493 4.38968 4.39935 4.46763 4.52532 4.56151 4.57429 4.64362 4.71900 4.73708 4.86576 4.87839 4.94272 4.98384 5.01008 5.14144 5.21338 5.25913 5.28123 5.29184 5.42756 5.49862 5.57516 5.60059 5.79120 5.92461 5.94543 6.05195 6.52982 6.78483 8.21025 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.003106 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.699488 B = 9012.061640 C = 9742.509961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.109 3.891 4 C -0.220 4.220 5 C -0.082 4.082 6 C -0.159 4.159 7 C -0.040 4.040 8 C -0.072 4.072 9 C -0.068 4.068 10 C -0.126 4.126 11 C 0.120 3.880 12 N -1.007 6.007 13 S 2.716 3.284 14 O -1.045 7.045 15 O -1.041 7.041 16 C -1.036 5.036 17 H 0.117 0.883 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.988 3.012 21 H -0.248 1.248 22 H -0.260 1.260 23 H -0.257 1.257 24 C 0.115 3.885 25 C -0.123 4.123 26 C -0.169 4.169 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.298 0.702 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 9.598 15.158 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.064 3.936 4 C -0.238 4.238 5 C -0.100 4.100 6 C -0.177 4.177 7 C -0.040 4.040 8 C -0.109 4.109 9 C -0.087 4.087 10 C -0.164 4.164 11 C -0.005 4.005 12 N -0.846 5.846 13 S 2.818 3.182 14 O -1.035 7.035 15 O -1.032 7.032 16 C -1.169 5.169 17 H 0.135 0.865 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.807 3.193 21 H -0.170 1.170 22 H -0.184 1.184 23 H -0.182 1.182 24 C -0.010 4.010 25 C -0.162 4.162 26 C -0.188 4.188 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.750 9.481 14.063 25.283 hybrid contribution 0.300 -1.192 0.404 1.294 sum -18.450 8.289 14.467 24.868 Atomic orbital electron populations 1.23289 0.76660 1.05260 1.02185 1.86058 1.23372 1.27458 1.88860 1.19255 0.92558 0.84805 0.96993 1.21457 1.00863 0.92170 1.09351 1.21260 0.94811 0.97575 0.96314 1.21247 0.94019 0.98480 1.03945 1.19781 0.96152 0.92026 0.96010 1.20688 0.89776 1.04089 0.96366 1.20990 0.95064 0.97247 0.95373 1.22019 1.01313 0.98711 0.94405 1.21415 0.79953 1.00791 0.98357 1.57673 1.18250 1.38149 1.70561 1.00046 0.71141 0.72955 0.74018 1.93285 1.73828 1.74815 1.61552 1.93285 1.53627 1.70772 1.85483 1.30994 1.37803 1.32911 1.15203 0.86501 1.26019 0.92180 0.98649 0.97426 1.70001 1.27948 1.35855 1.18990 0.85129 0.78960 0.76762 0.78489 1.17048 1.18432 1.18160 1.21512 0.99610 0.86422 0.93409 1.21975 0.95619 1.03526 0.95084 1.20478 0.91714 0.98730 1.07863 0.91536 0.91866 0.86896 0.83888 0.83388 0.83924 0.88339 0.91178 0.89753 0.92521 0.89960 0.90541 0.91711 0.89167 0.90170 0.91111 0.87800 0.92308 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.59 10.50 -92.48 -0.97 -8.56 16 3 C 0.11 2.40 6.69 22.50 0.15 2.55 16 4 C -0.22 -3.79 9.04 22.37 0.20 -3.59 16 5 C -0.08 -1.25 10.04 22.26 0.22 -1.02 16 6 C -0.16 -2.61 9.70 22.28 0.22 -2.39 16 7 C -0.04 -0.78 4.71 -19.88 -0.09 -0.87 16 8 C -0.07 -1.32 4.84 29.85 0.14 -1.18 16 9 C -0.07 -1.52 2.14 -10.77 -0.02 -1.55 16 10 C -0.13 -3.55 4.97 30.67 0.15 -3.40 16 11 C 0.12 4.24 6.38 86.36 0.55 4.79 16 12 N -1.01 -41.58 3.29 -513.06 -1.69 -43.27 16 13 S 2.72 151.25 4.97 -56.49 -0.28 150.97 16 14 O -1.04 -64.59 16.73 -128.00 -2.14 -66.73 16 15 O -1.04 -63.61 16.74 -128.00 -2.14 -65.75 16 16 C -1.04 -58.45 9.75 67.73 0.66 -57.79 16 17 H 0.12 6.01 7.81 -2.91 -0.02 5.98 16 18 C 0.07 3.96 5.46 84.65 0.46 4.42 16 19 N -0.90 -54.74 13.19 21.45 0.28 -54.46 16 20 Si 0.99 42.23 29.54 68.60 2.03 44.25 16 21 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 24 C 0.12 3.82 6.37 86.36 0.55 4.37 16 25 C -0.12 -3.06 5.36 30.68 0.16 -2.90 16 26 C -0.17 -3.90 7.86 22.36 0.18 -3.72 16 27 H 0.07 0.64 7.67 -2.39 -0.02 0.63 16 28 H 0.06 0.67 7.65 -2.39 -0.02 0.66 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.14 1.77 6.30 -2.91 -0.02 1.76 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.10 1.37 8.09 -2.39 -0.02 1.35 16 34 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.08 2.14 6.18 -2.39 -0.01 2.12 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.58 7.13 -2.38 -0.02 2.57 16 40 H 0.30 16.30 8.31 -92.71 -0.77 15.53 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.61 7.13 -2.39 -0.02 2.59 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.12 2.92 8.04 -2.91 -0.02 2.89 16 Total: -1.00 -80.81 374.89 0.71 -80.10 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.98 Total: 24.35 kcal Atomic # 6 Polarization: -65.55 SS G_CDS: 4.65 Total: -60.90 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -1.40 Total: -97.73 kcal Atomic # 8 Polarization: -135.78 SS G_CDS: -5.25 Total: -141.04 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 151.25 SS G_CDS: -0.28 Total: 150.97 kcal Total: -80.81 0.71 -80.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.952 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds