Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 116.99940 * 2 1 4 4 C 1.38750 * 120.05627 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94575 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05404 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.11076 * 359.95407 * 6 5 4 8 8 C 1.50701 * 119.97069 * 179.97438 * 7 6 5 9 9 S 1.81400 * 109.46810 * 90.00415 * 8 7 6 10 10 O 1.42096 * 110.54092 * 68.37784 * 9 8 7 11 11 O 1.42098 * 110.54390 * 291.62541 * 9 8 7 12 12 N 1.65601 * 104.44774 * 179.97438 * 9 8 7 13 13 C 1.46501 * 119.99961 * 65.00416 * 12 9 8 14 14 H 1.08996 * 109.41057 * 334.85316 * 13 12 9 15 15 C 1.52952 * 109.41749 * 94.64580 * 13 12 9 16 16 C 1.53228 * 109.40786 * 183.70332 * 15 13 12 17 17 C 1.51265 * 108.53589 * 305.37245 * 16 15 13 18 18 C 1.37877 * 120.84887 * 231.32614 * 17 16 15 19 19 N 1.31515 * 120.00193 * 359.97438 * 18 17 16 20 20 Si 1.86801 * 120.00019 * 179.97438 * 18 17 16 21 21 H 1.48503 * 109.47177 * 89.99352 * 20 18 17 22 22 H 1.48495 * 109.47285 * 209.99561 * 20 18 17 23 23 H 1.48501 * 109.47225 * 330.00032 * 20 18 17 24 24 C 1.51268 * 118.30322 * 51.34444 * 17 16 15 25 25 C 1.52966 * 109.40962 * 214.99709 * 13 12 9 26 26 C 1.38162 * 120.05636 * 0.28048 * 7 6 5 27 27 H 1.08998 * 109.46904 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47332 * 300.00102 * 1 2 3 29 29 H 1.09006 * 109.46959 * 60.00066 * 1 2 3 30 30 H 1.08002 * 120.02948 * 0.04417 * 4 3 2 31 31 H 1.08001 * 119.97365 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.94407 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.47422 * 330.00222 * 8 7 6 34 34 H 1.08997 * 109.47207 * 210.00481 * 8 7 6 35 35 H 0.96996 * 119.99929 * 244.99806 * 12 9 8 36 36 H 1.09003 * 109.48420 * 303.68322 * 15 13 12 37 37 H 1.08999 * 109.48569 * 63.70535 * 15 13 12 38 38 H 1.08996 * 109.62330 * 65.08468 * 16 15 13 39 39 H 1.09001 * 109.62565 * 185.46161 * 16 15 13 40 40 H 0.96999 * 119.99887 * 180.02562 * 19 18 17 41 41 H 1.08992 * 109.62819 * 188.93853 * 24 17 16 42 42 H 1.09002 * 109.62503 * 68.36646 * 24 17 16 43 43 H 1.08997 * 109.47972 * 296.27079 * 25 13 12 44 44 H 1.08996 * 109.48230 * 56.31651 * 25 13 12 45 45 H 1.07999 * 120.02974 * 179.73739 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0006 8 6 5.5608 2.5983 -0.0018 9 16 6.1657 2.6329 1.7080 10 8 5.9370 1.3825 2.3432 11 8 5.8039 3.8529 2.3404 12 7 7.8129 2.7207 1.5618 13 6 8.4329 3.9046 0.9616 14 1 7.7197 4.3878 0.2938 15 6 8.8361 4.8827 2.0662 16 6 9.3997 6.1599 1.4346 17 6 10.5254 5.7775 0.4993 18 6 11.7579 6.3891 0.5892 19 7 11.9664 7.3182 1.4963 20 14 13.1315 5.8979 -0.5776 21 1 13.0753 6.7477 -1.7941 22 1 14.4423 6.0828 0.0953 23 1 12.9689 4.4726 -0.9616 24 6 10.2643 4.7073 -0.5374 25 6 9.6693 3.4828 0.1658 26 6 3.4311 1.2849 -0.0050 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3204 -0.0002 31 1 1.3340 4.5114 -0.0019 32 1 3.7922 4.6381 -0.0024 33 1 5.8754 3.5058 -0.5170 34 1 5.9711 1.7285 -0.5149 35 1 8.3672 1.9884 1.8736 36 1 7.9625 5.1304 2.6692 37 1 9.5960 4.4238 2.6987 38 1 8.6151 6.6683 0.8744 39 1 9.7773 6.8191 2.2163 40 1 12.8333 7.7486 1.5592 41 1 11.2004 4.4317 -1.0229 42 1 9.5596 5.0813 -1.2801 43 1 10.4096 3.0571 0.8431 44 1 9.3861 2.7382 -0.5781 45 1 4.0206 0.3800 -0.0085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197397160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -98.667811 kcal Electronic energy + Delta-G solvation = -27417.976294 eV Core-core repulsion = 23527.248071 eV Total energy + Delta-G solvation = -3890.728223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44535 -37.97658 -37.60621 -36.82549 -35.74965 -33.71736 -33.02796 -31.29104 -30.82351 -29.63393 -27.94657 -27.19176 -26.89923 -22.88966 -22.11026 -21.73063 -21.51286 -19.71290 -19.14614 -18.13552 -17.46595 -16.66076 -16.45556 -16.29409 -16.06324 -15.94881 -15.76739 -14.78397 -14.51252 -14.44367 -14.14580 -13.65281 -13.23592 -13.09247 -13.00656 -12.75956 -12.53585 -12.38390 -12.37608 -12.24176 -11.96955 -11.91072 -11.80557 -11.62854 -11.26914 -11.21157 -11.20002 -10.93871 -10.88527 -10.66221 -10.33062 -9.95674 -9.61968 -9.38280 -9.08463 -8.85405 -8.53264 -8.48972 -8.41575 -6.11489 -4.03313 0.21653 1.06620 1.16185 2.86247 2.97509 3.24539 3.31991 3.33758 3.43200 3.83881 4.21464 4.25203 4.35134 4.48718 4.72895 4.73766 4.78669 4.86768 5.04248 5.10091 5.13219 5.15773 5.27927 5.31497 5.38028 5.70359 5.79995 5.91740 5.95673 5.99775 6.12391 6.22603 6.39387 6.45610 6.59305 6.70085 6.81938 6.98743 7.06312 7.07080 7.17289 7.29164 7.36952 7.63086 7.76502 7.85480 8.36626 8.95611 9.51751 10.97787 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.002548 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.738900 B =10984.706556 C =11016.528278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.127 3.873 4 C -0.203 4.203 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.048 4.048 8 C -0.594 4.594 9 S 2.608 3.392 10 O -0.963 6.963 11 O -0.943 6.943 12 N -1.114 6.114 13 C 0.161 3.839 14 H 0.070 0.930 15 C -0.125 4.125 16 C 0.010 3.990 17 C -0.490 4.490 18 C 0.076 3.924 19 N -0.887 5.887 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.021 4.021 25 C -0.113 4.113 26 C -0.140 4.140 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.414 0.586 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.005 0.995 39 H 0.060 0.940 40 H 0.264 0.736 41 H 0.038 0.962 42 H 0.019 0.981 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.604 -11.840 -5.079 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.082 3.918 4 C -0.222 4.222 5 C -0.094 4.094 6 C -0.160 4.160 7 C -0.049 4.049 8 C -0.720 4.720 9 S 2.699 3.301 10 O -0.953 6.953 11 O -0.932 6.932 12 N -0.873 5.873 13 C 0.056 3.944 14 H 0.088 0.912 15 C -0.164 4.164 16 C -0.028 4.028 17 C -0.509 4.509 18 C -0.127 4.127 19 N -0.525 5.525 20 Si 0.715 3.285 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.190 1.190 24 C -0.059 4.059 25 C -0.152 4.152 26 C -0.159 4.159 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.972 -11.779 -4.259 23.575 hybrid contribution 0.978 -0.402 -1.244 1.633 sum -18.994 -12.182 -5.503 23.226 Atomic orbital electron populations 1.23084 0.78272 1.04080 1.01425 1.86087 1.21462 1.26684 1.88673 1.18904 0.92028 0.84372 0.96474 1.21331 1.00236 0.92376 1.08300 1.20968 0.94286 0.97301 0.96878 1.21173 0.94170 0.98281 1.02405 1.18729 0.91853 0.93307 1.01054 1.29764 1.00953 1.12878 1.28365 1.05153 0.73692 0.74522 0.76730 1.93571 1.84715 1.44594 1.72448 1.93619 1.82621 1.46188 1.70813 1.55821 1.24844 1.28940 1.77721 1.20885 0.95204 0.83457 0.94862 0.91203 1.22134 0.99509 0.98073 0.96730 1.19376 0.94285 0.92426 0.96705 1.20051 0.96754 1.18798 1.15314 1.24865 0.97913 0.94721 0.95209 1.69840 1.23751 1.25374 1.33502 0.86693 0.81423 0.79257 0.81123 1.20455 1.21677 1.18994 1.19827 0.96923 0.93135 0.96005 1.21899 0.96091 0.99030 0.98197 1.20373 0.91884 0.98114 1.05556 0.88116 0.92493 0.92592 0.85096 0.84965 0.84601 0.83544 0.83835 0.75219 0.93277 0.92686 0.97638 0.92177 0.92561 0.94336 0.96311 0.92147 0.94294 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.31 10.50 -19.44 -0.20 -3.51 16 3 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 4 C -0.20 -1.96 9.04 -39.43 -0.36 -2.32 16 5 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 6 C -0.14 -1.63 9.70 -39.56 -0.38 -2.01 16 7 C -0.05 -0.58 5.14 -104.65 -0.54 -1.12 16 8 C -0.59 -6.75 6.09 36.01 0.22 -6.53 16 9 S 2.61 38.75 5.36 -107.50 -0.58 38.18 16 10 O -0.96 -16.28 18.08 -57.54 -1.04 -17.32 16 11 O -0.94 -17.14 17.02 -57.54 -0.98 -18.12 16 12 N -1.11 -16.54 5.36 -4.93 -0.03 -16.57 16 13 C 0.16 2.84 2.45 -67.97 -0.17 2.67 16 14 H 0.07 1.14 7.14 -51.93 -0.37 0.77 16 15 C -0.12 -2.64 5.53 -26.64 -0.15 -2.79 16 16 C 0.01 0.25 5.96 -27.49 -0.16 0.08 16 17 C -0.49 -12.37 5.51 -98.93 -0.55 -12.91 16 18 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 19 N -0.89 -25.07 12.74 55.43 0.71 -24.37 16 20 Si 0.89 20.33 27.53 -169.99 -4.68 15.65 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.26 -5.78 6.11 56.52 0.35 -5.44 16 24 C -0.02 -0.44 5.59 -27.48 -0.15 -0.60 16 25 C -0.11 -2.04 5.46 -26.63 -0.15 -2.18 16 26 C -0.14 -1.71 9.64 -39.43 -0.38 -2.09 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.15 1.46 7.38 -51.93 -0.38 1.07 16 34 H 0.14 1.28 8.08 -51.93 -0.42 0.86 16 35 H 0.41 5.44 8.80 -34.47 -0.30 5.14 16 36 H 0.05 1.03 7.34 -51.93 -0.38 0.65 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 39 H 0.06 1.63 7.08 -51.93 -0.37 1.26 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 41 H 0.04 0.83 4.59 -51.93 -0.24 0.59 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -33.21 372.39 -10.30 -43.51 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.59 Total: 3.62 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -2.53 Total: -26.69 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.68 Total: -40.93 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -2.22 Total: -38.95 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.68 Total: 15.65 kcal Atomic # 16 Polarization: 38.75 SS G_CDS: -0.58 Total: 38.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.21 -10.30 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197397160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.154 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds