Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 116.99963 * 2 1 4 4 C 1.38739 * 120.05396 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94347 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05583 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.94309 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.47118 * 90.00472 * 7 6 5 9 9 O 1.42096 * 110.54165 * 68.37465 * 8 7 6 10 10 O 1.42098 * 110.54096 * 291.62282 * 8 7 6 11 11 N 1.65607 * 104.45033 * 180.02562 * 8 7 6 12 12 C 1.46499 * 120.00033 * 64.99697 * 11 8 7 13 13 H 1.09002 * 109.41166 * 334.99932 * 12 11 8 14 14 C 1.52960 * 109.35486 * 94.82528 * 12 11 8 15 15 C 1.53226 * 109.40263 * 183.66833 * 14 12 11 16 16 C 1.51275 * 108.53854 * 305.37175 * 15 14 12 17 17 C 1.37878 * 120.85231 * 231.37589 * 16 15 14 18 18 N 1.31521 * 119.99563 * 348.89606 * 17 16 15 19 19 Si 1.86794 * 120.00022 * 168.90306 * 17 16 15 20 20 H 1.48501 * 109.47394 * 354.65255 * 19 17 16 21 21 H 1.48494 * 109.47338 * 114.65689 * 19 17 16 22 22 H 1.48508 * 109.47042 * 234.65412 * 19 17 16 23 23 C 1.51267 * 118.29671 * 51.34655 * 16 15 14 24 24 C 1.52958 * 109.40993 * 215.14162 * 12 11 8 25 25 C 1.38268 * 120.11296 * 0.27956 * 6 5 4 26 26 C 1.38153 * 120.05232 * 359.44702 * 25 6 5 27 27 H 1.09006 * 109.47307 * 300.00418 * 1 2 3 28 28 H 1.08997 * 109.46996 * 60.00188 * 1 2 3 29 29 H 1.08994 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.02519 * 359.95518 * 4 3 2 31 31 H 1.07996 * 119.97352 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47492 * 330.00512 * 7 6 5 33 33 H 1.08999 * 109.47312 * 210.00364 * 7 6 5 34 34 H 0.96997 * 119.99620 * 245.00603 * 11 8 7 35 35 H 1.08993 * 109.48143 * 303.65034 * 14 12 11 36 36 H 1.09001 * 109.47808 * 63.68542 * 14 12 11 37 37 H 1.09002 * 109.62489 * 185.66426 * 15 14 12 38 38 H 1.08993 * 109.78700 * 65.17858 * 15 14 12 39 39 H 0.97006 * 119.99328 * 180.02562 * 18 17 16 40 40 H 1.09005 * 109.62451 * 188.93903 * 23 16 15 41 41 H 1.09004 * 109.78467 * 68.46358 * 23 16 15 42 42 H 1.08995 * 109.48767 * 296.34549 * 24 12 11 43 43 H 1.09006 * 109.48208 * 56.37808 * 24 12 11 44 44 H 1.07997 * 119.97508 * 179.70436 * 25 6 5 45 45 H 1.07997 * 120.02519 * 180.27180 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 16 4.2613 5.5553 -1.7135 9 8 3.0250 5.8524 -2.3478 10 8 5.2293 4.7292 -2.3458 11 7 5.0109 7.0251 -1.5698 12 6 6.3453 7.1114 -0.9713 13 1 6.4989 6.2628 -0.3047 14 6 7.4002 7.0857 -2.0786 15 6 8.7977 7.0835 -1.4503 16 6 8.9059 8.2665 -0.5138 17 6 9.9631 9.1467 -0.6056 18 7 11.0005 8.8521 -1.3585 19 14 9.9221 10.7576 0.3392 20 1 8.6020 10.9091 1.0022 21 1 10.9946 10.7566 1.3662 22 1 10.1370 11.8878 -0.5998 23 6 7.8240 8.4594 0.5257 24 6 6.4617 8.4117 -0.1742 25 6 1.9211 3.6048 0.0032 26 6 1.2915 2.3751 -0.0020 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.0209 0.3798 0.0017 31 1 5.1346 2.5750 0.0000 32 1 4.9440 4.9387 0.5115 33 1 3.3580 5.7468 0.5100 34 1 4.5664 7.8287 -1.8819 35 1 7.2716 6.1874 -2.6824 36 1 7.2865 7.9673 -2.7095 37 1 9.5513 7.1666 -2.2335 38 1 8.9499 6.1597 -0.8923 39 1 11.7445 9.4712 -1.4228 40 1 7.9520 9.4264 1.0122 41 1 7.8814 7.6648 1.2698 42 1 6.3704 9.2619 -0.8501 43 1 5.6679 8.4532 0.5716 44 1 1.3343 4.5114 0.0067 45 1 0.2130 2.3202 -0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259903902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -97.503285 kcal Electronic energy + Delta-G solvation = -27345.965282 eV Core-core repulsion = 23455.287556 eV Total energy + Delta-G solvation = -3890.677725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.45656 -38.03005 -37.60316 -36.81595 -35.73606 -33.71203 -32.58403 -31.38303 -31.29768 -29.63884 -28.31103 -26.90326 -26.52685 -23.00158 -22.09933 -21.76782 -21.51737 -19.70456 -19.09481 -18.47306 -17.51377 -16.69195 -16.53144 -16.21304 -16.07400 -15.76637 -15.41457 -14.75326 -14.57922 -14.47927 -14.16380 -13.80268 -13.23143 -13.13052 -13.00890 -12.74490 -12.54843 -12.39659 -12.37762 -12.25293 -12.10316 -11.91368 -11.79658 -11.67433 -11.30157 -11.25074 -11.11946 -10.88686 -10.81013 -10.67182 -10.30573 -9.95239 -9.50448 -9.33494 -9.30796 -8.91972 -8.50650 -8.41165 -8.32461 -6.13221 -4.02610 0.25964 1.04455 1.15597 2.90216 2.95760 3.23517 3.31635 3.34191 3.42313 3.86094 4.19068 4.32403 4.35369 4.47958 4.57798 4.72692 4.77429 4.92381 5.02909 5.09106 5.12022 5.22078 5.29256 5.30171 5.43102 5.72421 5.79956 5.92008 5.92213 5.99911 6.01060 6.22857 6.41110 6.45116 6.58893 6.71203 6.81458 7.01641 7.03278 7.06870 7.18056 7.30011 7.38196 7.63498 7.77038 7.84617 8.36488 8.95190 9.51827 10.96131 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.002508 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.805843 B =11163.720408 C =11304.271841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.132 3.868 4 C -0.148 4.148 5 C -0.063 4.063 6 C -0.126 4.126 7 C -0.585 4.585 8 S 2.605 3.395 9 O -0.967 6.967 10 O -0.945 6.945 11 N -1.115 6.115 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.125 4.125 15 C 0.012 3.988 16 C -0.491 4.491 17 C 0.077 3.923 18 N -0.883 5.883 19 Si 0.878 3.122 20 H -0.256 1.256 21 H -0.283 1.283 22 H -0.286 1.286 23 C -0.024 4.024 24 C -0.113 4.113 25 C -0.065 4.065 26 C -0.207 4.207 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.413 0.587 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.044 0.956 41 H 0.018 0.982 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.133 0.867 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.957 -11.617 4.898 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.086 3.914 4 C -0.166 4.166 5 C -0.082 4.082 6 C -0.128 4.128 7 C -0.711 4.711 8 S 2.697 3.303 9 O -0.957 6.957 10 O -0.935 6.935 11 N -0.874 5.874 12 C 0.057 3.943 13 H 0.088 0.912 14 C -0.165 4.165 15 C -0.027 4.027 16 C -0.510 4.510 17 C -0.127 4.127 18 N -0.520 5.520 19 Si 0.706 3.294 20 H -0.181 1.181 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.062 4.062 24 C -0.153 4.153 25 C -0.084 4.084 26 C -0.226 4.226 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.247 0.753 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.151 0.849 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.817 -12.336 4.084 23.697 hybrid contribution -0.336 1.620 1.083 1.978 sum -20.152 -10.716 5.167 23.402 Atomic orbital electron populations 1.23093 0.78243 1.04076 1.01545 1.86080 1.21537 1.26820 1.88496 1.19124 0.92461 0.84217 0.95609 1.20460 0.91359 0.98744 1.06068 1.21073 1.00703 0.90759 0.95699 1.18901 0.93627 0.92449 1.07793 1.29642 1.10299 1.03505 1.27702 1.05236 0.73926 0.74170 0.76973 1.93556 1.45837 1.83563 1.72766 1.93615 1.60251 1.68503 1.71086 1.55831 1.28324 1.25456 1.77820 1.20875 0.79428 0.99201 0.94838 0.91186 1.22146 0.97311 1.00307 0.96735 1.19355 0.91575 0.95055 0.96672 1.20036 1.05432 1.09960 1.15560 1.24864 0.94662 0.97914 0.95212 1.69910 1.06531 1.36045 1.39553 0.86766 0.78416 0.84232 0.79959 1.18143 1.20969 1.21257 1.19956 0.92108 0.98153 0.96028 1.21923 0.99219 0.96004 0.98157 1.20954 0.93495 0.97863 0.96127 1.21223 1.00293 0.92016 1.09067 0.92542 0.92416 0.88121 0.84439 0.84079 0.83893 0.84215 0.75327 0.93233 0.92781 0.92538 0.97517 0.92634 0.93790 0.96326 0.92265 0.94378 0.84903 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.10 10.50 -19.41 -0.20 -3.30 16 3 C 0.13 1.42 6.69 -39.21 -0.26 1.16 16 4 C -0.15 -1.63 9.99 -39.43 -0.39 -2.02 16 5 C -0.06 -0.74 9.69 -39.60 -0.38 -1.12 16 6 C -0.13 -1.48 5.14 -104.60 -0.54 -2.02 16 7 C -0.59 -6.48 6.09 36.00 0.22 -6.26 16 8 S 2.60 38.15 5.36 -107.50 -0.58 37.57 16 9 O -0.97 -15.96 18.08 -57.54 -1.04 -17.00 16 10 O -0.94 -17.14 17.02 -57.54 -0.98 -18.12 16 11 N -1.12 -16.40 5.35 -4.93 -0.03 -16.43 16 12 C 0.16 2.84 2.45 -67.97 -0.17 2.68 16 13 H 0.07 1.15 7.14 -51.93 -0.37 0.78 16 14 C -0.13 -2.64 5.53 -26.63 -0.15 -2.79 16 15 C 0.01 0.28 5.93 -27.48 -0.16 0.12 16 16 C -0.49 -12.38 5.48 -98.92 -0.54 -12.92 16 17 C 0.08 2.03 5.44 -17.82 -0.10 1.94 16 18 N -0.88 -24.98 12.82 55.43 0.71 -24.27 16 19 Si 0.88 20.04 27.95 -169.99 -4.75 15.29 16 20 H -0.26 -5.50 5.58 56.52 0.32 -5.18 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.02 -0.52 5.65 -27.48 -0.16 -0.68 16 24 C -0.11 -2.04 5.46 -26.63 -0.15 -2.19 16 25 C -0.07 -0.71 9.69 -39.60 -0.38 -1.09 16 26 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 27 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.14 1.41 7.38 -51.92 -0.38 1.03 16 33 H 0.14 1.19 8.08 -51.92 -0.42 0.78 16 34 H 0.41 5.36 8.80 -34.47 -0.30 5.06 16 35 H 0.05 1.04 7.34 -51.93 -0.38 0.66 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.53 7.19 -51.93 -0.37 1.15 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.04 0.94 4.36 -51.93 -0.23 0.72 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -33.12 372.23 -10.39 -43.51 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.61 Total: 3.61 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.52 Total: -26.47 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.68 Total: -40.70 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.22 Total: -38.42 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.75 Total: 15.29 kcal Atomic # 16 Polarization: 38.15 SS G_CDS: -0.58 Total: 37.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.12 -10.39 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259903902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.992 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds