Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46740 * 2 1 4 4 C 1.50701 * 109.47279 * 240.00240 * 2 1 3 5 5 H 1.08000 * 119.99833 * 239.99802 * 4 2 1 6 6 C 1.37877 * 120.00099 * 59.99322 * 4 2 1 7 7 N 1.31515 * 120.00048 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99989 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46946 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47260 * 120.00284 * 8 6 4 11 11 H 1.48496 * 109.46994 * 239.99958 * 8 6 4 12 12 C 1.50696 * 109.47318 * 119.99574 * 2 1 3 13 13 O 1.20829 * 119.99570 * 120.00422 * 12 2 1 14 14 O 1.34229 * 120.00490 * 300.00230 * 12 2 1 15 15 C 1.45199 * 117.00256 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.46975 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00450 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99739 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00000 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47465 * 180.02562 * 19 18 16 21 21 O 1.42903 * 109.46726 * 65.00068 * 20 19 18 22 22 C 1.35904 * 116.99628 * 180.02562 * 21 20 19 23 23 C 1.38771 * 120.04254 * 359.72712 * 22 21 20 24 24 C 1.38137 * 119.99170 * 179.74512 * 23 22 21 25 25 C 1.38249 * 120.07851 * 0.52965 * 24 23 22 26 26 C 1.38476 * 120.08973 * 359.74253 * 25 24 23 27 27 F 1.35096 * 120.00395 * 179.97438 * 26 25 24 28 28 C 1.38388 * 119.99948 * 359.97438 * 26 25 24 29 29 H 1.08992 * 109.47368 * 60.00588 * 1 2 3 30 30 H 1.09001 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46976 * 299.99570 * 1 2 3 32 32 H 0.97003 * 120.00540 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46679 * 60.00047 * 15 14 12 34 34 H 1.08993 * 109.47170 * 300.00500 * 15 14 12 35 35 H 0.96999 * 120.00357 * 0.02562 * 18 16 15 36 36 H 1.09002 * 109.47131 * 60.00453 * 19 18 16 37 37 H 1.09002 * 109.47421 * 300.00408 * 19 18 16 38 38 H 1.09002 * 109.47398 * 185.00312 * 20 19 18 39 39 H 1.09001 * 109.47194 * 305.00492 * 20 19 18 40 40 H 1.07997 * 120.00380 * 359.97438 * 23 22 21 41 41 H 1.07994 * 119.95751 * 180.27410 * 24 23 22 42 42 H 1.07999 * 119.95718 * 179.76792 * 25 24 23 43 43 H 1.08004 * 120.03532 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1466 -2.2869 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 6 2.0324 -0.7103 1.2305 13 8 2.7271 -1.6926 1.1196 14 8 1.7082 -0.2517 2.4496 15 6 2.2269 -0.9862 3.5897 16 6 1.7630 -0.3289 4.8639 17 8 1.0637 0.6608 4.8161 18 7 2.1254 -0.8409 6.0568 19 6 1.6749 -0.2017 7.2956 20 6 2.2225 -0.9749 8.4969 21 8 3.6480 -0.8762 8.5173 22 6 4.2961 -1.5127 9.5282 23 6 3.5740 -2.2131 10.4841 24 6 4.2341 -2.8640 11.5082 25 6 5.6132 -2.8097 11.5884 26 6 6.3367 -2.1071 10.6394 27 9 7.6842 -2.0547 10.7198 28 6 5.6793 -1.4585 9.6087 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1614 -3.4844 33 1 3.3164 -0.9858 3.5568 34 1 1.8628 -2.0130 3.5566 35 1 2.6850 -1.6322 6.0952 36 1 0.5854 -0.2016 7.3291 37 1 2.0395 0.8251 7.3281 38 1 1.8159 -0.5535 9.4163 39 1 1.9319 -2.0225 8.4179 40 1 2.4964 -2.2523 10.4254 41 1 3.6719 -3.4126 12.2493 42 1 6.1271 -3.3162 12.3919 43 1 6.2430 -0.9107 8.8680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261591484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = -181.267099 kcal Electronic energy + Delta-G solvation = -27513.134145 eV Core-core repulsion = 23052.610972 eV Total energy + Delta-G solvation = -4460.523173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.38690 -40.76298 -40.04131 -39.15609 -37.89282 -35.73984 -35.02855 -33.88518 -31.75656 -30.90142 -30.58094 -29.93002 -27.97257 -25.18879 -24.27795 -23.41381 -22.99473 -22.05841 -20.85230 -19.84043 -19.20453 -17.61358 -17.11746 -16.92593 -16.77858 -16.67568 -16.53817 -16.23825 -16.10438 -15.91644 -15.54996 -15.29937 -14.90175 -14.67529 -14.30959 -14.19451 -13.56633 -13.44717 -13.18539 -12.91400 -12.79288 -12.61834 -12.49362 -12.23005 -12.03953 -11.60196 -11.52573 -11.48890 -11.05502 -10.78020 -10.68808 -10.34956 -10.19747 -10.06453 -9.91356 -9.44163 -9.38181 -9.18466 -9.01917 -8.88037 -8.44817 -6.09540 -4.15423 0.56880 0.72599 2.38008 2.52335 2.56050 3.02754 3.24135 3.29690 3.36854 3.43687 3.72830 3.80983 4.04783 4.28880 4.36084 4.41063 4.43752 4.47400 4.60849 4.66852 4.73573 4.82299 5.14340 5.23123 5.24673 5.26183 5.35077 5.39454 5.52683 5.64572 5.74732 5.99464 6.07920 6.14827 6.70023 6.73134 6.89845 6.90318 7.10964 7.22237 7.45270 7.75750 7.94957 8.06033 8.14486 8.78462 8.93360 9.50002 10.97814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.001665 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.786955 B =16809.187370 C =17774.275985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.467 3.533 13 O -0.517 6.517 14 O -0.342 6.342 15 C 0.044 3.956 16 C 0.518 3.482 17 O -0.512 6.512 18 N -0.732 5.732 19 C 0.125 3.875 20 C 0.046 3.954 21 O -0.306 6.306 22 C 0.161 3.839 23 C -0.221 4.221 24 C -0.050 4.050 25 C -0.193 4.193 26 C 0.140 3.860 27 F -0.133 7.133 28 C -0.190 4.190 29 H 0.096 0.904 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.405 0.595 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -6.465 31.000 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.312 3.688 13 O -0.404 6.404 14 O -0.259 6.259 15 C -0.034 4.034 16 C 0.304 3.696 17 O -0.385 6.385 18 N -0.388 5.388 19 C 0.002 3.998 20 C -0.029 4.029 21 O -0.220 6.220 22 C 0.115 3.885 23 C -0.239 4.239 24 C -0.068 4.068 25 C -0.212 4.212 26 C 0.120 3.880 27 F -0.112 7.112 28 C -0.209 4.209 29 H 0.115 0.885 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.239 0.761 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.752 -5.787 30.637 31.403 hybrid contribution 0.806 -1.059 -0.505 1.423 sum 4.558 -6.846 30.131 31.234 Atomic orbital electron populations 1.21738 0.95425 1.00055 1.01981 1.18800 0.95028 0.97095 0.85092 0.91571 1.21166 1.31948 1.13257 0.88694 0.90547 1.24948 0.94922 0.95031 0.99149 1.69895 1.36456 1.22765 1.23782 0.86317 0.78625 0.79681 0.82146 1.19527 1.20897 1.20903 1.25556 0.76446 0.83221 0.83606 1.90501 1.36512 1.26792 1.86608 1.86737 1.69942 1.54766 1.14433 1.22425 1.00442 0.96305 0.84239 1.20307 0.80332 0.84485 0.84499 1.90759 1.35966 1.24768 1.87038 1.45764 1.55176 1.32894 1.04964 1.21387 0.99766 0.97647 0.81048 1.23219 0.78481 1.01623 0.99616 1.86152 1.21010 1.69269 1.45544 1.18588 0.91110 0.91359 0.87398 1.21355 1.00800 1.04058 0.97733 1.20803 0.93270 0.96050 0.96682 1.21089 0.94857 1.04232 1.01064 1.17309 0.77036 0.97995 0.95615 1.91534 1.29056 1.94684 1.95895 1.20315 0.92479 1.06544 1.01566 0.88523 0.95015 0.95469 0.92714 0.88700 0.88768 0.76092 0.88774 0.89923 0.89735 0.90657 0.84648 0.84574 0.84534 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.90 37.16 0.33 -2.93 16 2 C 0.06 1.52 2.74 -92.92 -0.25 1.27 16 3 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 4 C -0.51 -14.43 8.37 -34.44 -0.29 -14.72 16 5 H 0.08 2.23 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.47 11.05 7.25 36.00 0.26 11.31 16 13 O -0.52 -12.86 15.21 -18.75 -0.29 -13.14 16 14 O -0.34 -7.11 9.66 -45.90 -0.44 -7.56 16 15 C 0.04 0.67 5.94 36.00 0.21 0.89 16 16 C 0.52 7.31 7.91 -10.99 -0.09 7.22 16 17 O -0.51 -9.39 16.50 -14.10 -0.23 -9.63 16 18 N -0.73 -6.79 5.50 -60.30 -0.33 -7.12 16 19 C 0.12 0.91 6.06 -4.04 -0.02 0.89 16 20 C 0.05 0.22 4.87 37.16 0.18 0.40 16 21 O -0.31 -2.25 10.08 -19.44 -0.20 -2.45 16 22 C 0.16 1.16 6.68 -39.23 -0.26 0.90 16 23 C -0.22 -1.18 9.04 -39.42 -0.36 -1.53 16 24 C -0.05 -0.24 10.04 -39.61 -0.40 -0.64 16 25 C -0.19 -1.16 10.02 -39.49 -0.40 -1.56 16 26 C 0.14 1.09 7.30 -39.44 -0.29 0.80 16 27 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 28 C -0.19 -1.50 9.97 -39.37 -0.39 -1.90 16 29 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.60 8.11 -51.93 -0.42 0.17 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.40 2.81 8.47 -40.82 -0.35 2.46 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.24 7.65 -51.93 -0.40 -0.15 16 39 H 0.08 0.25 7.67 -51.93 -0.40 -0.15 16 40 H 0.14 0.42 6.30 -52.49 -0.33 0.09 16 41 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -34.45 379.15 -7.49 -41.94 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.50 Total: -0.69 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.85 Total: 1.98 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.30 Total: -31.49 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.16 Total: -32.78 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.45 -7.49 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261591484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.331 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds