Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46740 * 2 1 4 4 C 1.50701 * 109.47279 * 240.00240 * 2 1 3 5 5 H 1.08000 * 119.99833 * 239.99802 * 4 2 1 6 6 C 1.37877 * 120.00099 * 59.99322 * 4 2 1 7 7 N 1.31515 * 120.00048 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99989 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46946 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47260 * 120.00284 * 8 6 4 11 11 H 1.48496 * 109.46994 * 239.99958 * 8 6 4 12 12 C 1.50696 * 109.47318 * 119.99574 * 2 1 3 13 13 O 1.20829 * 119.99570 * 120.00422 * 12 2 1 14 14 O 1.34229 * 120.00490 * 300.00230 * 12 2 1 15 15 C 1.45199 * 117.00256 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.46975 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00450 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99739 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00000 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47465 * 180.02562 * 19 18 16 21 21 O 1.42903 * 109.46726 * 65.00068 * 20 19 18 22 22 C 1.35904 * 116.99628 * 180.02562 * 21 20 19 23 23 C 1.38771 * 120.04254 * 359.72712 * 22 21 20 24 24 C 1.38137 * 119.99170 * 179.74512 * 23 22 21 25 25 C 1.38249 * 120.07851 * 0.52965 * 24 23 22 26 26 C 1.38476 * 120.08973 * 359.74253 * 25 24 23 27 27 F 1.35096 * 120.00395 * 179.97438 * 26 25 24 28 28 C 1.38388 * 119.99948 * 359.97438 * 26 25 24 29 29 H 1.08992 * 109.47368 * 60.00588 * 1 2 3 30 30 H 1.09001 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46976 * 299.99570 * 1 2 3 32 32 H 0.97003 * 120.00540 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46679 * 60.00047 * 15 14 12 34 34 H 1.08993 * 109.47170 * 300.00500 * 15 14 12 35 35 H 0.96999 * 120.00357 * 0.02562 * 18 16 15 36 36 H 1.09002 * 109.47131 * 60.00453 * 19 18 16 37 37 H 1.09002 * 109.47421 * 300.00408 * 19 18 16 38 38 H 1.09002 * 109.47398 * 185.00312 * 20 19 18 39 39 H 1.09001 * 109.47194 * 305.00492 * 20 19 18 40 40 H 1.07997 * 120.00380 * 359.97438 * 23 22 21 41 41 H 1.07994 * 119.95751 * 180.27410 * 24 23 22 42 42 H 1.07999 * 119.95718 * 179.76792 * 25 24 23 43 43 H 1.08004 * 120.03532 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1466 -2.2869 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 6 2.0324 -0.7103 1.2305 13 8 2.7271 -1.6926 1.1196 14 8 1.7082 -0.2517 2.4496 15 6 2.2269 -0.9862 3.5897 16 6 1.7630 -0.3289 4.8639 17 8 1.0637 0.6608 4.8161 18 7 2.1254 -0.8409 6.0568 19 6 1.6749 -0.2017 7.2956 20 6 2.2225 -0.9749 8.4969 21 8 3.6480 -0.8762 8.5173 22 6 4.2961 -1.5127 9.5282 23 6 3.5740 -2.2131 10.4841 24 6 4.2341 -2.8640 11.5082 25 6 5.6132 -2.8097 11.5884 26 6 6.3367 -2.1071 10.6394 27 9 7.6842 -2.0547 10.7198 28 6 5.6793 -1.4585 9.6087 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7087 1.1614 -3.4844 33 1 3.3164 -0.9858 3.5568 34 1 1.8628 -2.0130 3.5566 35 1 2.6850 -1.6322 6.0952 36 1 0.5854 -0.2016 7.3291 37 1 2.0395 0.8251 7.3281 38 1 1.8159 -0.5535 9.4163 39 1 1.9319 -2.0225 8.4179 40 1 2.4964 -2.2523 10.4254 41 1 3.6719 -3.4126 12.2493 42 1 6.1271 -3.3162 12.3919 43 1 6.2430 -0.9107 8.8680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261591484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -202.559012 kcal Electronic energy + Delta-G solvation = -27514.057432 eV Core-core repulsion = 23052.610972 eV Total energy + Delta-G solvation = -4461.446460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98692 -41.63256 -41.20058 -40.45847 -38.41014 -37.41701 -35.96692 -35.92575 -32.77623 -32.28140 -31.40354 -30.55835 -29.02128 -27.28491 -25.20174 -24.51313 -23.85569 -22.62067 -21.93506 -21.61940 -19.67807 -18.76810 -18.62497 -18.08913 -17.70681 -17.55446 -17.49851 -17.23215 -17.10723 -16.97115 -16.69985 -16.28899 -16.18501 -15.83812 -15.33560 -14.81358 -14.73971 -14.69077 -14.47836 -14.01193 -13.72592 -13.60603 -13.43315 -13.32357 -13.07308 -12.98110 -12.76182 -12.67624 -12.61194 -12.30580 -12.05776 -12.03168 -11.91834 -11.79698 -11.24086 -11.10482 -10.97987 -10.54049 -10.26837 -9.92506 -9.33476 -8.19589 -6.33602 0.10032 0.27404 1.33096 1.35074 1.41429 1.43276 1.45079 1.58523 1.95282 2.34591 2.50432 2.58150 3.10447 3.32939 3.56655 3.64124 3.84385 3.98488 4.02250 4.04138 4.07782 4.08805 4.23076 4.24369 4.32667 4.42129 4.62630 4.67752 4.77094 4.89128 4.98182 4.99809 5.08647 5.20889 5.23495 5.31146 5.33612 5.41642 5.67791 5.69633 5.86937 6.08106 6.29779 6.31810 6.73388 6.96450 7.05375 7.35377 8.87318 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.001665 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.786955 B =16809.187370 C =17774.275985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.048 3.952 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.477 3.523 13 O -0.534 6.534 14 O -0.351 6.351 15 C 0.034 3.966 16 C 0.523 3.477 17 O -0.561 6.561 18 N -0.709 5.709 19 C 0.120 3.880 20 C 0.049 3.951 21 O -0.326 6.326 22 C 0.151 3.849 23 C -0.215 4.215 24 C -0.046 4.046 25 C -0.196 4.196 26 C 0.116 3.884 27 F -0.147 7.147 28 C -0.211 4.211 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.419 0.581 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -8.079 32.718 33.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.029 3.971 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.322 3.678 13 O -0.423 6.423 14 O -0.267 6.267 15 C -0.043 4.043 16 C 0.309 3.691 17 O -0.439 6.439 18 N -0.364 5.364 19 C -0.002 4.002 20 C -0.026 4.026 21 O -0.240 6.240 22 C 0.105 3.895 23 C -0.233 4.233 24 C -0.064 4.064 25 C -0.215 4.215 26 C 0.097 3.903 27 F -0.126 7.126 28 C -0.231 4.231 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.256 0.744 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.181 0.819 41 H 0.186 0.814 42 H 0.169 0.831 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.971 -7.422 32.412 33.383 hybrid contribution 1.054 -0.553 -0.887 1.484 sum 4.025 -7.975 31.525 32.766 Atomic orbital electron populations 1.21558 0.94433 1.00054 1.01788 1.18713 0.95943 0.96214 0.86185 0.93373 1.21281 1.32616 1.13316 0.90185 0.92073 1.25703 0.94899 0.95669 1.01764 1.69986 1.36707 1.23482 1.24725 0.85355 0.78316 0.78488 0.78593 1.19798 1.19826 1.20059 1.24865 0.76068 0.82629 0.84229 1.90478 1.37200 1.27407 1.87174 1.86644 1.69892 1.55372 1.14815 1.22870 1.01517 0.97039 0.82841 1.20096 0.79921 0.83837 0.85264 1.90745 1.38536 1.26909 1.87694 1.45641 1.53849 1.32657 1.04247 1.21584 1.00555 0.97263 0.80831 1.23341 0.77326 1.02737 0.99175 1.86111 1.22329 1.69654 1.45949 1.18673 0.90819 0.91984 0.88012 1.21698 1.02142 1.02706 0.96763 1.21219 0.92802 0.95399 0.96934 1.21376 0.95671 1.03627 1.00794 1.17584 0.76683 0.99359 0.96663 1.91491 1.30098 1.94939 1.96054 1.20383 0.93382 1.07390 1.01902 0.90340 0.94800 0.93878 0.92265 0.87118 0.86539 0.74430 0.87720 0.91425 0.87129 0.88323 0.81858 0.81372 0.83059 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.90 71.98 0.64 -5.27 16 2 C 0.05 2.56 2.74 -12.29 -0.03 2.52 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.54 -30.60 8.37 25.60 0.21 -30.39 16 5 H 0.06 3.62 6.76 -2.91 -0.02 3.60 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.48 22.69 7.25 71.23 0.52 23.21 16 13 O -0.53 -26.54 15.21 21.96 0.33 -26.20 16 14 O -0.35 -14.55 9.66 -45.05 -0.44 -14.99 16 15 C 0.03 1.01 5.94 71.24 0.42 1.44 16 16 C 0.52 14.24 7.91 87.66 0.69 14.94 16 17 O -0.56 -20.54 16.50 15.77 0.26 -20.28 16 18 N -0.71 -11.83 5.50 -463.06 -2.55 -14.38 16 19 C 0.12 1.52 6.06 86.38 0.52 2.04 16 20 C 0.05 0.31 4.87 71.98 0.35 0.66 16 21 O -0.33 -4.22 10.08 -92.47 -0.93 -5.16 16 22 C 0.15 1.94 6.68 22.50 0.15 2.09 16 23 C -0.21 -1.59 9.04 22.37 0.20 -1.38 16 24 C -0.05 -0.30 10.04 22.25 0.22 -0.07 16 25 C -0.20 -2.04 10.02 22.33 0.22 -1.81 16 26 C 0.12 1.82 7.30 22.36 0.16 1.98 16 27 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 28 C -0.21 -3.40 9.97 22.41 0.22 -3.17 16 29 H 0.08 4.14 6.07 -2.39 -0.01 4.12 16 30 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.91 8.11 -2.39 -0.02 1.90 16 32 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 34 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 35 H 0.42 4.78 8.47 -92.71 -0.79 4.00 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 0.19 7.65 -2.39 -0.02 0.17 16 39 H 0.10 0.21 7.67 -2.39 -0.02 0.19 16 40 H 0.16 0.22 6.30 -2.91 -0.02 0.21 16 41 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.95 379.15 4.96 -70.99 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.27 Total: 8.79 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 4.96 Total: 8.30 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -2.31 Total: -65.47 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -0.77 Total: -66.63 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.95 4.96 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261591484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.566 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds