Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 13 13 O 1.20827 * 120.00318 * 240.00383 * 12 2 1 14 14 O 1.34233 * 119.99906 * 59.99730 * 12 2 1 15 15 C 1.45204 * 116.99847 * 180.02562 * 14 12 2 16 16 C 1.50693 * 109.47015 * 179.97438 * 15 14 12 17 17 O 1.21279 * 120.00082 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99996 * 179.97438 * 16 15 14 19 19 C 1.46496 * 119.99883 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47093 * 180.02562 * 19 18 16 21 21 O 1.42899 * 109.47307 * 64.99855 * 20 19 18 22 22 C 1.35896 * 117.00117 * 180.02562 * 21 20 19 23 23 C 1.38770 * 120.04526 * 359.72429 * 22 21 20 24 24 C 1.38134 * 119.99626 * 179.74771 * 23 22 21 25 25 C 1.38250 * 120.08078 * 0.52782 * 24 23 22 26 26 C 1.38478 * 120.08440 * 359.74800 * 25 24 23 27 27 F 1.35095 * 120.00056 * 179.97438 * 26 25 24 28 28 C 1.38390 * 120.00387 * 359.97438 * 26 25 24 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46912 * 300.00457 * 15 14 12 34 34 H 1.09002 * 109.47079 * 60.00117 * 15 14 12 35 35 H 0.96997 * 119.99676 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.47704 * 300.00122 * 19 18 16 37 37 H 1.09002 * 109.47165 * 60.00320 * 19 18 16 38 38 H 1.08993 * 109.47500 * 185.00379 * 20 19 18 39 39 H 1.09002 * 109.47113 * 305.00110 * 20 19 18 40 40 H 1.08002 * 119.99813 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.95607 * 180.27985 * 24 23 22 42 42 H 1.08000 * 119.95864 * 179.77045 * 25 24 23 43 43 H 1.07995 * 120.04072 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6928 -1.1197 14 8 1.7079 -0.2517 -2.4496 15 6 2.2266 -0.9862 -3.5897 16 6 1.7617 -0.3297 -4.8639 17 8 1.0625 0.6600 -4.8160 18 7 2.1238 -0.8419 -6.0569 19 6 1.6722 -0.2033 -7.2956 20 6 2.2186 -0.9773 -8.4970 21 8 1.6496 -2.2879 -8.5181 22 6 2.0335 -3.1110 -9.5290 23 6 2.9351 -2.6641 -10.4845 24 6 3.3286 -3.5033 -11.5087 25 6 2.8169 -4.7851 -11.5896 26 6 1.9126 -5.2326 -10.6412 27 9 1.4132 -6.4853 -10.7221 28 6 1.5203 -4.3967 -9.6103 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 0.7095 1.1617 3.4844 33 1 3.3161 -0.9860 -3.5569 34 1 1.8624 -2.0131 -3.5566 35 1 2.6833 -1.6333 -6.0952 36 1 0.5827 -0.2039 -7.3286 37 1 2.0361 0.8237 -7.3286 38 1 1.9577 -0.4530 -9.4162 39 1 3.3031 -1.0533 -8.4175 40 1 3.3326 -1.6616 -10.4248 41 1 4.0339 -3.1564 -12.2494 42 1 3.1231 -5.4383 -12.3933 43 1 0.8154 -4.7452 -8.8701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261591485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -202.553507 kcal Electronic energy + Delta-G solvation = -27525.625707 eV Core-core repulsion = 23064.179486 eV Total energy + Delta-G solvation = -4461.446221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.98644 -41.63217 -41.20101 -40.45838 -38.41015 -37.41654 -35.96737 -35.92680 -32.77716 -32.28138 -31.40326 -30.55819 -29.02137 -27.28770 -25.20328 -24.51399 -23.85568 -22.62039 -21.93503 -21.61940 -19.67823 -18.76797 -18.62234 -18.09207 -17.73820 -17.55015 -17.44776 -17.20426 -17.16264 -16.96534 -16.70115 -16.33876 -16.09612 -15.89522 -15.27701 -14.88749 -14.74697 -14.70343 -14.40761 -14.01520 -13.77559 -13.57618 -13.41392 -13.34294 -13.07180 -12.98213 -12.76221 -12.67736 -12.61540 -12.30983 -12.05759 -12.03156 -11.91791 -11.79696 -11.24131 -11.10651 -10.97990 -10.54048 -10.26824 -9.92467 -9.33424 -8.19644 -6.33593 0.10072 0.27428 1.32436 1.36092 1.41062 1.43283 1.45134 1.58559 1.95271 2.34616 2.50453 2.58176 3.10438 3.32974 3.56662 3.64135 3.84420 3.98485 4.02266 4.04133 4.07770 4.08787 4.23118 4.24301 4.32688 4.42155 4.62597 4.67282 4.77104 4.88765 4.97598 4.99837 5.08666 5.20911 5.23482 5.30993 5.33641 5.41377 5.67626 5.69665 5.86480 6.07876 6.29838 6.31798 6.73404 6.96431 7.05373 7.35376 8.87307 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.001666 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.945412 B =16802.346292 C =17622.757417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.477 3.523 13 O -0.534 6.534 14 O -0.351 6.351 15 C 0.034 3.966 16 C 0.523 3.477 17 O -0.561 6.561 18 N -0.709 5.709 19 C 0.120 3.880 20 C 0.049 3.951 21 O -0.326 6.326 22 C 0.151 3.849 23 C -0.215 4.215 24 C -0.046 4.046 25 C -0.196 4.196 26 C 0.116 3.884 27 F -0.147 7.147 28 C -0.211 4.211 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.268 0.732 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.419 0.581 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -6.184 -32.710 33.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.322 3.678 13 O -0.423 6.423 14 O -0.267 6.267 15 C -0.043 4.043 16 C 0.309 3.691 17 O -0.439 6.439 18 N -0.364 5.364 19 C -0.002 4.002 20 C -0.026 4.026 21 O -0.240 6.240 22 C 0.105 3.895 23 C -0.233 4.233 24 C -0.064 4.064 25 C -0.215 4.215 26 C 0.097 3.903 27 F -0.126 7.126 28 C -0.231 4.231 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.256 0.744 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.181 0.819 41 H 0.186 0.814 42 H 0.169 0.831 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.373 -5.725 -32.404 33.341 hybrid contribution 0.288 -1.094 0.884 1.436 sum 5.661 -6.819 -31.519 32.741 Atomic orbital electron populations 1.21563 0.94582 0.99970 1.01787 1.18709 0.95813 0.96299 0.86182 0.93200 1.21280 1.32615 1.13313 0.90185 0.92071 1.25703 0.94896 0.95675 1.01766 1.69988 1.36708 1.23478 1.24721 0.85353 0.78297 0.78502 0.78588 1.19802 1.19932 1.19956 1.24868 0.76061 0.82635 0.84232 1.90477 1.37243 1.27359 1.87175 1.86646 1.69944 1.55320 1.14816 1.22871 1.01767 0.96789 0.82841 1.20097 0.79898 0.83860 0.85265 1.90745 1.38344 1.27100 1.87694 1.45642 1.53868 1.32643 1.04246 1.21583 1.00724 0.97094 0.80830 1.23338 0.99616 0.80448 0.99175 1.86108 1.66403 1.25567 1.45954 1.18673 0.93411 0.89394 0.88006 1.21698 1.01587 1.03263 0.96771 1.21219 0.96877 0.91330 0.96930 1.21377 1.00166 0.99125 1.00802 1.17585 0.96447 0.79592 0.96662 1.91491 1.86331 1.38711 1.96049 1.20384 1.07061 0.93709 1.01901 0.94961 0.90293 0.93926 0.92267 0.86531 0.87123 0.74430 0.91414 0.87730 0.87133 0.88331 0.81863 0.81375 0.83057 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.90 71.98 0.64 -5.35 16 2 C 0.05 2.59 2.74 -12.29 -0.03 2.55 16 3 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 4 C -0.54 -30.59 8.37 25.60 0.21 -30.38 16 5 H 0.06 3.62 6.76 -2.91 -0.02 3.60 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -51.31 11.32 21.45 0.24 -51.07 16 8 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.48 22.69 7.25 71.24 0.52 23.20 16 13 O -0.53 -26.53 15.21 21.96 0.33 -26.19 16 14 O -0.35 -14.55 9.66 -45.09 -0.44 -14.99 16 15 C 0.03 1.01 5.94 71.23 0.42 1.44 16 16 C 0.52 14.24 7.91 87.65 0.69 14.94 16 17 O -0.56 -20.54 16.50 15.77 0.26 -20.28 16 18 N -0.71 -11.83 5.50 -463.07 -2.55 -14.38 16 19 C 0.12 1.52 6.06 86.38 0.52 2.04 16 20 C 0.05 0.31 4.87 71.98 0.35 0.66 16 21 O -0.33 -4.22 10.08 -92.38 -0.93 -5.15 16 22 C 0.15 1.94 6.68 22.50 0.15 2.09 16 23 C -0.21 -1.59 9.04 22.37 0.20 -1.39 16 24 C -0.05 -0.30 10.04 22.25 0.22 -0.07 16 25 C -0.20 -2.04 10.02 22.33 0.22 -1.81 16 26 C 0.12 1.82 7.30 22.36 0.16 1.98 16 27 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 28 C -0.21 -3.39 9.97 22.41 0.22 -3.17 16 29 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 4.18 6.07 -2.39 -0.01 4.17 16 31 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 32 H 0.27 14.17 8.31 -92.71 -0.77 13.39 16 33 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 34 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 35 H 0.42 4.78 8.47 -92.71 -0.79 3.99 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 0.19 7.65 -2.39 -0.02 0.17 16 39 H 0.10 0.21 7.67 -2.39 -0.02 0.19 16 40 H 0.16 0.23 6.30 -2.91 -0.02 0.21 16 41 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.90 379.15 4.96 -70.94 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.27 Total: 8.86 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 4.96 Total: 8.25 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -2.31 Total: -65.45 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -0.77 Total: -66.62 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.90 4.96 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261591485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.609 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds