Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20755 * 120.00025 * 2 1 4 4 C 1.50696 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47142 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46969 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47075 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47128 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46698 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99510 * 164.72670 * 9 8 7 11 11 O 1.42106 * 106.40261 * 178.54339 * 10 9 8 12 12 O 1.42097 * 106.40533 * 311.46033 * 10 9 8 13 13 C 1.76200 * 107.22079 * 65.00170 * 10 9 8 14 14 C 1.38630 * 119.74993 * 269.72817 * 13 10 9 15 15 C 1.37618 * 120.24695 * 179.71446 * 14 13 10 16 16 C 1.40719 * 119.74378 * 0.57642 * 15 14 13 17 17 C 1.41396 * 120.24427 * 179.67814 * 16 15 14 18 18 H 1.07991 * 120.00468 * 155.30906 * 17 16 15 19 19 C 1.39949 * 119.99931 * 335.31140 * 17 16 15 20 20 N 1.30824 * 120.00276 * 342.22899 * 19 17 16 21 21 Si 1.86800 * 120.00191 * 162.23310 * 19 17 16 22 22 H 1.48501 * 109.47159 * 94.66023 * 21 19 17 23 23 H 1.48499 * 109.47216 * 214.66410 * 21 19 17 24 24 H 1.48502 * 109.47008 * 334.66239 * 21 19 17 25 25 C 1.40711 * 119.51194 * 359.69948 * 16 15 14 26 26 C 1.37614 * 119.74678 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47212 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.46957 * 59.99818 * 1 2 3 30 30 H 1.08997 * 109.47409 * 59.99751 * 4 2 1 31 31 H 1.09007 * 109.47141 * 300.00012 * 4 2 1 32 32 H 1.08997 * 109.47451 * 59.99434 * 5 4 2 33 33 H 1.08996 * 109.46679 * 299.99387 * 5 4 2 34 34 H 1.08997 * 109.47394 * 59.99524 * 6 5 4 35 35 H 1.08996 * 109.47022 * 299.99302 * 6 5 4 36 36 H 1.09007 * 109.46944 * 59.99848 * 7 6 5 37 37 H 1.09007 * 109.47090 * 300.00206 * 7 6 5 38 38 H 1.09003 * 109.47112 * 60.00792 * 8 7 6 39 39 H 1.08996 * 109.47306 * 299.99889 * 8 7 6 40 40 H 0.97002 * 120.00488 * 345.00798 * 9 8 7 41 41 H 1.08001 * 119.87848 * 359.97438 * 14 13 10 42 42 H 1.08005 * 120.12838 * 180.27790 * 15 14 13 43 43 H 0.96993 * 120.00542 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.12820 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.87955 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5297 -2.3506 0.0002 7 6 6.0340 -2.0710 0.0004 8 6 6.7990 -3.3960 0.0011 9 7 8.2393 -3.1283 0.0006 10 16 9.3062 -4.3370 0.3789 11 8 10.6066 -3.7771 0.2569 12 8 8.8269 -4.9354 1.5753 13 6 9.1725 -5.5635 -0.8790 14 6 8.2673 -6.6032 -0.7327 15 6 8.1503 -7.5634 -1.7115 16 6 8.9624 -7.4937 -2.8586 17 6 8.8558 -8.4783 -3.8677 18 1 9.1474 -8.2466 -4.8813 19 6 8.3722 -9.7534 -3.5529 20 7 8.3471 -10.1545 -2.3079 21 14 7.7627 -10.8826 -4.9103 22 1 8.8632 -11.7847 -5.3352 23 1 6.6249 -11.6930 -4.4065 24 1 7.3155 -10.0678 -6.0685 25 6 9.8818 -6.4370 -2.9937 26 6 9.9770 -5.4842 -2.0054 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9972 -1.8763 -0.8908 31 1 1.9972 -1.8771 0.8892 32 1 4.0278 -0.4545 0.8906 33 1 4.0284 -0.4535 -0.8894 34 1 4.2668 -2.9220 -0.8899 35 1 4.2661 -2.9222 0.8900 36 1 6.2973 -1.4994 0.8904 37 1 6.2974 -1.4994 -0.8896 38 1 6.5359 -3.9679 -0.8888 39 1 6.5355 -3.9672 0.8912 40 1 8.5678 -2.2420 -0.2174 41 1 7.6486 -6.6575 0.1509 42 1 7.4412 -8.3701 -1.5976 43 1 8.0124 -11.0383 -2.0897 44 1 10.5103 -6.3740 -3.8697 45 1 10.6822 -4.6725 -2.1067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261856992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -131.483520 kcal Electronic energy + Delta-G solvation = -26051.454757 eV Core-core repulsion = 22159.303538 eV Total energy + Delta-G solvation = -3892.151219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.81229 -37.57695 -36.83113 -36.36931 -35.09929 -34.39355 -34.03693 -31.55912 -30.25984 -29.85736 -29.46785 -26.04656 -25.81670 -22.47506 -21.55081 -21.23569 -21.12278 -19.82647 -18.77989 -17.62070 -17.04986 -16.52957 -16.39319 -16.09689 -15.68105 -15.51143 -15.34183 -15.24838 -14.35424 -14.15795 -14.02996 -13.39999 -13.23251 -13.12281 -12.90532 -12.77314 -12.44087 -12.30544 -12.22921 -12.14007 -11.89955 -11.75122 -11.46385 -11.38326 -11.34807 -11.26808 -11.21467 -11.20006 -10.88203 -10.85240 -10.70872 -10.44656 -9.90229 -9.76183 -9.64107 -9.49500 -9.01651 -7.95937 -7.70627 -7.14492 -4.80382 1.28459 1.62645 2.25669 2.86392 2.88100 2.91982 2.94702 3.64702 3.66320 3.78945 4.24150 4.52193 4.53975 4.63356 4.66449 4.83518 4.92297 5.06066 5.06807 5.14652 5.27726 5.32828 5.38312 5.44123 5.51283 5.57595 5.71516 5.75128 5.85103 5.92595 6.07541 6.11148 6.14693 6.19675 6.33780 6.67692 6.70993 6.91056 7.04904 7.17618 7.31353 7.35558 7.42783 7.63184 7.76520 7.96756 8.31424 8.50930 8.64730 9.77135 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.002493 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.269235 B =11226.701045 C =13474.069915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.352 3.648 3 O -0.461 6.461 4 C -0.175 4.175 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.125 4.125 8 C 0.120 3.880 9 N -1.128 6.128 10 S 2.695 3.305 11 O -0.987 6.987 12 O -0.985 6.985 13 C -0.787 4.787 14 C -0.016 4.016 15 C -0.184 4.184 16 C 0.139 3.861 17 C -0.436 4.436 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.239 4.239 26 C 0.002 3.998 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.409 0.591 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 11.101 1.896 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.228 3.772 3 O -0.335 6.335 4 C -0.212 4.212 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.164 4.164 8 C -0.006 4.006 9 N -0.884 5.884 10 S 2.794 3.206 11 O -0.978 6.978 12 O -0.975 6.975 13 C -0.883 4.883 14 C -0.037 4.037 15 C -0.204 4.204 16 C 0.135 3.865 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.387 5.387 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.260 4.260 26 C -0.018 4.018 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.242 0.758 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.298 11.277 2.887 17.673 hybrid contribution -0.452 -0.727 -1.297 1.554 sum -13.750 10.550 1.590 17.403 Atomic orbital electron populations 1.22289 0.94731 1.04648 1.04676 1.24729 0.91913 0.90536 0.69975 1.90419 1.71966 1.35367 1.35766 1.22221 0.96882 0.97224 1.04864 1.21422 0.92558 0.97701 1.03268 1.21566 0.94295 0.97160 1.02838 1.21768 0.94608 0.97201 1.02832 1.21212 0.79350 0.97713 1.02364 1.55724 1.17225 1.26419 1.89017 1.01153 0.72023 0.73029 0.74438 1.93489 1.37489 1.78913 1.87893 1.93479 1.81480 1.77351 1.45191 1.29152 1.19118 1.20182 1.19841 1.20260 0.94215 0.92546 0.96639 1.21335 1.02807 1.00154 0.96095 1.17857 0.86985 0.90102 0.91507 1.19923 1.34639 0.94936 0.96833 0.89484 1.26142 0.92840 0.99283 0.96751 1.69823 1.30081 1.19306 1.19538 0.86155 0.79310 0.79508 0.81110 1.19109 1.19588 1.18023 1.21023 1.03977 1.00372 1.00603 1.20167 0.93724 0.96252 0.91637 0.89955 0.89165 0.89150 0.88168 0.88223 0.91444 0.91396 0.91285 0.91393 0.91319 0.91277 0.91487 0.90648 0.75849 0.87890 0.86037 0.89960 0.88224 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.90 10.33 36.01 0.37 -0.53 16 2 C 0.35 2.62 7.27 -29.03 -0.21 2.41 16 3 O -0.46 -5.36 16.72 6.00 0.10 -5.26 16 4 C -0.17 -1.05 5.55 -27.88 -0.15 -1.21 16 5 C -0.11 -0.91 4.51 -26.73 -0.12 -1.03 16 6 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 7 C -0.13 -1.24 5.36 -26.73 -0.14 -1.38 16 8 C 0.12 1.54 6.22 -4.04 -0.03 1.51 16 9 N -1.13 -16.31 6.00 -10.61 -0.06 -16.38 16 10 S 2.70 51.58 5.73 -107.50 -0.62 50.97 16 11 O -0.99 -20.99 17.26 -57.17 -0.99 -21.98 16 12 O -0.98 -21.09 16.72 -57.17 -0.96 -22.05 16 13 C -0.79 -17.18 5.97 -39.29 -0.23 -17.42 16 14 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 15 C -0.18 -4.53 8.70 -38.87 -0.34 -4.87 16 16 C 0.14 3.50 5.57 -106.82 -0.60 2.91 16 17 C -0.44 -10.61 9.05 -37.74 -0.34 -10.95 16 18 H 0.09 2.00 7.91 -52.49 -0.41 1.58 16 19 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 20 N -0.77 -18.23 10.97 55.55 0.61 -17.62 16 21 Si 0.92 16.80 29.59 -169.99 -5.03 11.77 16 22 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 25 C -0.24 -5.65 9.80 -38.88 -0.38 -6.03 16 26 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 27 H 0.08 0.20 8.00 -51.93 -0.42 -0.21 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 40 H 0.41 4.95 8.65 -34.47 -0.30 4.65 16 41 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 42 H 0.12 3.02 6.18 -52.48 -0.32 2.70 16 43 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 44 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 45 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -32.14 391.47 -11.05 -43.19 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.86 Total: 8.68 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: -3.15 Total: -37.22 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.55 Total: -34.00 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.84 Total: -49.29 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -0.62 Total: 50.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.14 -11.05 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261856992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.294 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds