Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20755 * 120.00025 * 2 1 4 4 C 1.50696 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47142 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46969 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47075 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47128 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46698 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99510 * 164.72670 * 9 8 7 11 11 O 1.42106 * 106.40261 * 178.54339 * 10 9 8 12 12 O 1.42097 * 106.40533 * 311.46033 * 10 9 8 13 13 C 1.76200 * 107.22079 * 65.00170 * 10 9 8 14 14 C 1.38630 * 119.74993 * 269.72817 * 13 10 9 15 15 C 1.37618 * 120.24695 * 179.71446 * 14 13 10 16 16 C 1.40719 * 119.74378 * 0.57642 * 15 14 13 17 17 C 1.41396 * 120.24427 * 179.67814 * 16 15 14 18 18 H 1.07991 * 120.00468 * 155.30906 * 17 16 15 19 19 C 1.39949 * 119.99931 * 335.31140 * 17 16 15 20 20 N 1.30824 * 120.00276 * 342.22899 * 19 17 16 21 21 Si 1.86800 * 120.00191 * 162.23310 * 19 17 16 22 22 H 1.48501 * 109.47159 * 94.66023 * 21 19 17 23 23 H 1.48499 * 109.47216 * 214.66410 * 21 19 17 24 24 H 1.48502 * 109.47008 * 334.66239 * 21 19 17 25 25 C 1.40711 * 119.51194 * 359.69948 * 16 15 14 26 26 C 1.37614 * 119.74678 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47212 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.46957 * 59.99818 * 1 2 3 30 30 H 1.08997 * 109.47409 * 59.99751 * 4 2 1 31 31 H 1.09007 * 109.47141 * 300.00012 * 4 2 1 32 32 H 1.08997 * 109.47451 * 59.99434 * 5 4 2 33 33 H 1.08996 * 109.46679 * 299.99387 * 5 4 2 34 34 H 1.08997 * 109.47394 * 59.99524 * 6 5 4 35 35 H 1.08996 * 109.47022 * 299.99302 * 6 5 4 36 36 H 1.09007 * 109.46944 * 59.99848 * 7 6 5 37 37 H 1.09007 * 109.47090 * 300.00206 * 7 6 5 38 38 H 1.09003 * 109.47112 * 60.00792 * 8 7 6 39 39 H 1.08996 * 109.47306 * 299.99889 * 8 7 6 40 40 H 0.97002 * 120.00488 * 345.00798 * 9 8 7 41 41 H 1.08001 * 119.87848 * 359.97438 * 14 13 10 42 42 H 1.08005 * 120.12838 * 180.27790 * 15 14 13 43 43 H 0.96993 * 120.00542 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.12820 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.87955 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5297 -2.3506 0.0002 7 6 6.0340 -2.0710 0.0004 8 6 6.7990 -3.3960 0.0011 9 7 8.2393 -3.1283 0.0006 10 16 9.3062 -4.3370 0.3789 11 8 10.6066 -3.7771 0.2569 12 8 8.8269 -4.9354 1.5753 13 6 9.1725 -5.5635 -0.8790 14 6 8.2673 -6.6032 -0.7327 15 6 8.1503 -7.5634 -1.7115 16 6 8.9624 -7.4937 -2.8586 17 6 8.8558 -8.4783 -3.8677 18 1 9.1474 -8.2466 -4.8813 19 6 8.3722 -9.7534 -3.5529 20 7 8.3471 -10.1545 -2.3079 21 14 7.7627 -10.8826 -4.9103 22 1 8.8632 -11.7847 -5.3352 23 1 6.6249 -11.6930 -4.4065 24 1 7.3155 -10.0678 -6.0685 25 6 9.8818 -6.4370 -2.9937 26 6 9.9770 -5.4842 -2.0054 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9972 -1.8763 -0.8908 31 1 1.9972 -1.8771 0.8892 32 1 4.0278 -0.4545 0.8906 33 1 4.0284 -0.4535 -0.8894 34 1 4.2668 -2.9220 -0.8899 35 1 4.2661 -2.9222 0.8900 36 1 6.2973 -1.4994 0.8904 37 1 6.2974 -1.4994 -0.8896 38 1 6.5359 -3.9679 -0.8888 39 1 6.5355 -3.9672 0.8912 40 1 8.5678 -2.2420 -0.2174 41 1 7.6486 -6.6575 0.1509 42 1 7.4412 -8.3701 -1.5976 43 1 8.0124 -11.0383 -2.0897 44 1 10.5103 -6.3740 -3.8697 45 1 10.6822 -4.6725 -2.1067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261856992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -151.559164 kcal Electronic energy + Delta-G solvation = -26052.325302 eV Core-core repulsion = 22159.303538 eV Total energy + Delta-G solvation = -3893.021764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.44716 -39.37062 -38.18256 -37.58951 -36.76588 -35.79731 -35.28627 -32.23201 -32.05714 -31.28137 -30.47773 -27.60985 -26.82517 -23.43339 -23.19249 -22.91378 -22.00800 -20.43037 -20.22670 -19.41293 -18.58929 -18.10576 -17.25630 -17.11708 -16.97804 -16.56411 -16.11688 -15.93262 -15.82806 -15.73652 -15.15532 -14.95182 -14.79515 -14.13157 -13.97067 -13.96056 -13.57214 -13.43689 -13.35508 -13.10426 -13.02087 -12.96911 -12.95795 -12.88939 -12.85329 -12.81518 -12.55237 -12.06575 -11.99686 -11.92770 -11.82508 -11.53506 -11.41239 -11.30447 -11.19413 -10.50518 -10.31207 -9.77704 -9.53820 -8.86389 -6.64022 -0.27505 0.49688 1.06623 1.07182 1.36635 1.42639 1.53690 2.12158 2.28315 2.55692 2.95898 3.19972 3.53758 3.61373 3.94061 3.98678 4.04838 4.22746 4.29441 4.33208 4.34087 4.51437 4.54218 4.62018 4.72710 4.77758 4.79143 4.87756 4.94430 4.95355 5.02824 5.05661 5.10270 5.12829 5.24891 5.25318 5.32471 5.44922 5.53123 5.53728 5.60591 5.77568 5.94091 6.16399 6.23588 6.50022 6.64302 6.69250 6.82051 8.09026 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.002493 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.269235 B =11226.701045 C =13474.069915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.352 3.648 3 O -0.513 6.513 4 C -0.174 4.174 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.112 3.888 9 N -1.111 6.111 10 S 2.727 3.273 11 O -1.006 7.006 12 O -1.005 7.005 13 C -0.796 4.796 14 C -0.019 4.019 15 C -0.206 4.206 16 C 0.110 3.890 17 C -0.466 4.466 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.799 5.799 21 Si 0.992 3.008 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.253 1.253 25 C -0.258 4.258 26 C -0.003 4.003 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.423 0.577 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.298 0.702 44 H 0.110 0.890 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 11.111 1.598 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.232 3.768 3 O -0.391 6.391 4 C -0.211 4.211 5 C -0.148 4.148 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.014 4.014 9 N -0.872 5.872 10 S 2.822 3.178 11 O -0.996 6.996 12 O -0.995 6.995 13 C -0.889 4.889 14 C -0.039 4.039 15 C -0.227 4.227 16 C 0.106 3.894 17 C -0.493 4.493 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.422 5.422 21 Si 0.811 3.189 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.177 1.177 25 C -0.278 4.278 26 C -0.023 4.023 27 H 0.125 0.875 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.825 11.266 2.575 18.798 hybrid contribution 0.026 -0.631 -1.113 1.279 sum -14.799 10.636 1.462 18.283 Atomic orbital electron populations 1.22308 0.92262 1.06440 1.04965 1.25309 0.93434 0.90178 0.67856 1.90411 1.73152 1.37044 1.38466 1.22281 0.95115 0.96956 1.06728 1.21353 0.94225 0.97134 1.02048 1.21543 0.93030 0.97367 1.03509 1.21752 0.95310 0.95511 1.03351 1.21444 0.78225 0.99479 1.02224 1.55284 1.17507 1.25832 1.88586 1.00205 0.71710 0.72623 0.73222 1.93458 1.39283 1.78992 1.87891 1.93454 1.81860 1.78272 1.45885 1.29636 1.18071 1.20975 1.20179 1.20459 0.94478 0.92297 0.96620 1.21361 1.03427 1.00782 0.97089 1.18221 0.87747 0.91174 0.92210 1.20212 1.36196 0.95885 0.96964 0.89056 1.27036 0.92151 1.00267 0.99096 1.69857 1.30524 1.20297 1.21493 0.85036 0.78872 0.77217 0.77777 1.18550 1.18592 1.17653 1.21251 1.04256 1.00655 1.01638 1.20458 0.93962 0.96443 0.91442 0.87452 0.88750 0.88821 0.86251 0.86123 0.92659 0.92745 0.90748 0.90588 0.90900 0.90742 0.91708 0.90823 0.74080 0.86493 0.87029 0.89030 0.87213 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 10.33 71.24 0.74 -0.62 16 2 C 0.35 4.83 7.27 29.10 0.21 5.04 16 3 O -0.51 -12.00 16.72 -1.44 -0.02 -12.03 16 4 C -0.17 -1.73 5.55 29.85 0.17 -1.56 16 5 C -0.11 -1.64 4.51 30.60 0.14 -1.51 16 6 C -0.12 -1.71 5.21 30.60 0.16 -1.55 16 7 C -0.12 -2.16 5.36 30.59 0.16 -2.00 16 8 C 0.11 2.69 6.22 86.38 0.54 3.23 16 9 N -1.11 -30.25 6.00 -187.49 -1.12 -31.37 16 10 S 2.73 101.18 5.73 -56.49 -0.32 100.85 16 11 O -1.01 -41.39 17.26 -128.00 -2.21 -43.60 16 12 O -1.00 -41.91 16.72 -128.00 -2.14 -44.05 16 13 C -0.80 -34.46 5.97 22.46 0.13 -34.32 16 14 C -0.02 -0.85 9.49 22.22 0.21 -0.64 16 15 C -0.21 -10.43 8.70 22.73 0.20 -10.23 16 16 C 0.11 5.67 5.57 -21.29 -0.12 5.55 16 17 C -0.47 -23.10 9.05 23.46 0.21 -22.88 16 18 H 0.09 4.27 7.91 -2.92 -0.02 4.24 16 19 C 0.03 1.55 5.14 85.26 0.44 1.99 16 20 N -0.80 -38.61 10.97 21.83 0.24 -38.37 16 21 Si 0.99 34.03 29.59 68.60 2.03 36.06 16 22 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 23 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 24 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 25 C -0.26 -12.33 9.80 22.73 0.22 -12.11 16 26 C 0.00 -0.15 9.49 22.22 0.21 0.06 16 27 H 0.11 0.18 8.00 -2.39 -0.02 0.16 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.95 8.10 -2.39 -0.02 0.94 16 33 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.82 7.75 -2.39 -0.02 1.80 16 40 H 0.42 9.35 8.65 -96.74 -0.84 8.51 16 41 H 0.12 4.91 7.59 -2.91 -0.02 4.88 16 42 H 0.11 5.74 6.18 -2.91 -0.02 5.73 16 43 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 44 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 45 H 0.12 4.89 7.60 -2.91 -0.02 4.87 16 Total: -1.00 -70.17 391.47 0.22 -69.95 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.15 Total: 34.11 kcal Atomic # 6 Polarization: -75.17 SS G_CDS: 3.62 Total: -71.55 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.89 Total: -69.74 kcal Atomic # 8 Polarization: -95.30 SS G_CDS: -4.37 Total: -99.67 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 16 Polarization: 101.18 SS G_CDS: -0.32 Total: 100.85 kcal Total: -70.17 0.22 -69.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261856992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.612 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds