Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47137 * 2 1 4 4 O 1.41607 * 119.99931 * 255.00072 * 3 2 1 5 5 C 1.42896 * 114.00034 * 269.99835 * 4 3 2 6 6 C 1.34775 * 120.00069 * 75.00103 * 3 2 1 7 7 O 1.21280 * 119.99844 * 0.02562 * 6 3 2 8 8 C 1.50697 * 120.00138 * 180.02562 * 6 3 2 9 9 N 1.46501 * 109.47349 * 180.02562 * 8 6 3 10 10 C 1.34769 * 120.00323 * 180.02562 * 9 8 6 11 11 O 1.21365 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.49310 * 120.00069 * 179.97438 * 10 9 8 13 13 O 1.21401 * 120.00204 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99824 * 179.97438 * 12 10 9 15 15 C 1.40291 * 119.99920 * 179.97438 * 14 12 10 16 16 C 1.40728 * 126.10038 * 359.96768 * 15 14 12 17 17 N 1.30879 * 108.37511 * 179.78865 * 16 15 14 18 18 N 1.40063 * 108.43330 * 0.38015 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.87892 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48504 * 109.46920 * 59.99981 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99751 * 23 21 19 27 27 C 1.35786 * 126.10045 * 180.02562 * 15 14 12 28 28 H 1.08997 * 109.46911 * 59.99788 * 1 2 3 29 29 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46988 * 299.99798 * 1 2 3 31 31 H 1.09008 * 109.47315 * 240.00002 * 2 1 3 32 32 H 1.08997 * 109.47628 * 120.00009 * 2 1 3 33 33 H 1.09007 * 109.47280 * 60.00008 * 5 4 3 34 34 H 1.08998 * 109.47357 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47545 * 300.00260 * 5 4 3 36 36 H 1.08996 * 109.47125 * 59.99705 * 8 6 3 37 37 H 1.09009 * 109.46831 * 299.99924 * 8 6 3 38 38 H 0.97005 * 119.99816 * 0.02562 * 9 8 6 39 39 H 0.97005 * 120.00106 * 0.02562 * 14 12 10 40 40 H 1.07994 * 125.80747 * 359.97438 * 16 15 14 41 41 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 42 42 H 1.08006 * 126.25013 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 8 2.5536 1.9430 -1.1846 5 6 3.9621 1.7532 -1.3329 6 6 1.9581 2.1173 1.1274 7 8 1.5002 1.6360 2.1421 8 6 2.4599 3.5382 1.1273 9 7 2.2864 4.1176 2.4616 10 6 2.6672 5.3884 2.6993 11 8 3.1543 6.0527 1.8080 12 6 2.4897 5.9790 4.0591 13 8 2.0029 5.3143 4.9508 14 7 2.8710 7.2496 4.2969 15 6 2.7038 7.8047 5.5744 16 6 2.1547 7.1550 6.6954 17 7 2.1681 7.9894 7.7036 18 7 2.7154 9.2026 7.2671 19 6 2.8964 10.3288 8.0314 20 1 3.3346 11.2136 7.5938 21 6 2.5211 10.3282 9.3698 22 7 1.9885 9.2526 9.9017 23 14 2.7744 11.8579 10.4115 24 1 2.0104 12.9883 9.8251 25 1 2.2948 11.6008 11.7932 26 1 4.2189 12.2009 10.4442 27 6 3.0419 9.0652 5.9495 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.1848 0.6864 -1.3537 34 1 4.2945 2.2124 -2.2639 35 1 4.4815 2.2165 -0.4941 36 1 1.8956 4.1228 0.4008 37 1 3.5169 3.5503 0.8610 38 1 1.8974 3.5865 3.1741 39 1 3.2604 7.7806 3.5845 40 1 1.7879 6.1396 6.7204 41 1 1.7262 9.2524 10.8356 42 1 3.4872 9.8212 5.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332179561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = 1.255282 kcal Electronic energy + Delta-G solvation = -28341.103123 eV Core-core repulsion = 23940.707427 eV Total energy + Delta-G solvation = -4400.395696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.83657 -40.21486 -39.40917 -38.04007 -37.81507 -35.24165 -34.45227 -34.01282 -33.13844 -30.99114 -30.31335 -28.68404 -27.90453 -26.99695 -25.32971 -24.20164 -23.06160 -21.03575 -20.78421 -20.41456 -19.50391 -18.89186 -17.60758 -17.52639 -17.26646 -16.75307 -16.19305 -15.86660 -15.57710 -15.39295 -15.06951 -15.00095 -14.92927 -14.51838 -14.28639 -14.01267 -13.87746 -13.49393 -13.40704 -13.10432 -12.96728 -12.71643 -12.62717 -12.35349 -11.72868 -11.59785 -11.56602 -11.27698 -11.26198 -11.22584 -10.89024 -10.57236 -10.39054 -10.27998 -9.66196 -9.44161 -9.21299 -9.16928 -8.86224 -8.11562 -6.76982 -6.59024 -4.26553 1.25450 1.61044 1.90608 2.44851 2.95150 3.04326 3.08323 3.31299 3.36388 3.71739 3.76418 3.95999 4.38223 4.40696 4.53219 4.58690 4.63664 4.68025 4.72575 4.86842 4.91319 4.98573 4.99520 5.05567 5.07517 5.25591 5.44949 5.77802 5.87223 5.96876 6.21099 6.37138 6.74704 6.77516 6.89820 6.91480 7.16535 7.18021 7.41729 7.73660 7.83581 8.08731 8.19544 8.48981 8.70377 9.32446 9.61195 10.36667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034170 B = 0.001823 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.233216 B =15355.108199 C =16003.654986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.478 5.478 4 O -0.140 6.140 5 C -0.011 4.011 6 C 0.520 3.480 7 O -0.506 6.506 8 C 0.105 3.895 9 N -0.697 5.697 10 C 0.520 3.480 11 O -0.528 6.528 12 C 0.485 3.515 13 O -0.517 6.517 14 N -0.582 5.582 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.260 5.260 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.077 4.077 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.425 0.575 39 H 0.409 0.591 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -14.738 -21.687 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.258 5.258 4 O -0.144 6.144 5 C -0.108 4.108 6 C 0.309 3.691 7 O -0.381 6.381 8 C -0.022 4.022 9 N -0.354 5.354 10 C 0.302 3.698 11 O -0.404 6.404 12 C 0.266 3.734 13 O -0.394 6.394 14 N -0.225 5.225 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.265 0.735 39 H 0.244 0.756 40 H 0.195 0.805 41 H 0.087 0.913 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.782 -14.838 -19.809 24.814 hybrid contribution 0.755 0.490 -0.818 1.216 sum 2.537 -14.348 -20.627 25.254 Atomic orbital electron populations 1.22141 0.94456 1.02873 1.03374 1.21753 0.95618 0.79356 1.03541 1.50165 1.58954 1.13348 1.03325 1.90687 1.23101 1.74878 1.25777 1.23484 0.81796 1.02115 1.03433 1.20663 0.78609 0.88202 0.81628 1.90812 1.45352 1.72109 1.29797 1.21066 1.03437 0.90890 0.86800 1.45439 1.63503 1.13686 1.12819 1.20304 0.78362 0.81838 0.89336 1.90735 1.43081 1.60449 1.46110 1.19475 0.82790 0.83219 0.87959 1.90683 1.43743 1.60190 1.44808 1.42111 1.57448 1.11582 1.11368 1.17245 1.19755 0.94898 0.85666 1.24167 1.05307 1.00962 0.89742 1.78271 1.20806 0.90043 1.19983 1.44564 1.32570 1.08873 1.04484 1.19875 1.43308 0.89730 0.92524 0.86478 1.25669 0.95326 0.98765 0.97403 1.70201 1.28964 1.26549 1.13638 0.85870 0.79390 0.80116 0.78638 1.19097 1.20101 1.19108 1.21295 1.15408 0.97499 0.88649 0.91943 0.90911 0.91268 0.89264 0.89539 0.92544 0.86992 0.92520 0.87169 0.88110 0.73519 0.75574 0.80513 0.91290 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.04 37.16 0.37 -0.73 16 2 C 0.12 0.73 6.38 -4.04 -0.03 0.70 16 3 N -0.48 -3.81 3.02 -60.29 -0.18 -3.99 16 4 O -0.14 -0.97 10.84 -11.47 -0.12 -1.09 16 5 C -0.01 -0.04 11.44 101.05 1.16 1.11 16 6 C 0.52 5.30 7.63 -10.99 -0.08 5.22 16 7 O -0.51 -6.56 14.74 5.56 0.08 -6.47 16 8 C 0.11 1.06 5.46 -5.19 -0.03 1.03 16 9 N -0.70 -9.11 5.52 -61.96 -0.34 -9.45 16 10 C 0.52 7.99 7.88 -11.65 -0.09 7.90 16 11 O -0.53 -8.43 16.47 5.48 0.09 -8.34 16 12 C 0.49 8.97 7.85 -11.65 -0.09 8.87 16 13 O -0.52 -10.85 13.62 5.45 0.07 -10.78 16 14 N -0.58 -11.04 5.45 -10.45 -0.06 -11.10 16 15 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 16 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 17 N -0.26 -7.53 10.39 30.81 0.32 -7.21 16 18 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 19 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.28 11.81 55.50 0.66 -20.63 16 23 Si 0.94 18.77 29.55 -169.99 -5.02 13.74 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 C -0.08 -1.82 11.50 -16.38 -0.19 -2.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.61 7.34 -51.93 -0.38 0.23 16 31 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.09 0.56 7.90 -51.93 -0.41 0.15 16 33 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 34 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.24 7.13 -51.93 -0.37 -0.13 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.87 7.13 -51.92 -0.37 0.50 16 38 H 0.42 5.90 6.91 -40.82 -0.28 5.62 16 39 H 0.41 6.60 8.29 -40.82 -0.34 6.26 16 40 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 41 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -34.40 371.81 -3.91 -38.30 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -4.97 Total: 13.72 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 0.01 Total: 11.52 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.35 Total: -56.20 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.12 Total: -26.68 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.40 -3.91 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332179561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.556 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds