Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47324 * 2 1 4 4 C 1.34234 * 116.99997 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00016 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47112 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.47430 * 304.98536 * 7 6 4 9 9 O 1.42907 * 109.47029 * 64.98045 * 7 6 4 10 10 C 1.50691 * 109.47283 * 184.98048 * 7 6 4 11 11 O 1.21292 * 120.00080 * 252.84373 * 10 7 6 12 12 N 1.34780 * 120.00045 * 72.83981 * 10 7 6 13 13 C 1.46502 * 119.99855 * 5.01142 * 12 10 7 14 14 C 1.50696 * 109.46989 * 264.26265 * 13 12 10 15 15 H 1.08000 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99868 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47080 * 119.99583 * 18 16 14 21 21 H 1.48503 * 109.46998 * 239.99678 * 18 16 14 22 22 C 1.40024 * 120.00082 * 185.00653 * 12 10 7 23 23 C 1.38848 * 120.04708 * 353.19466 * 22 12 10 24 24 C 1.38116 * 119.95478 * 180.25218 * 23 22 12 25 25 C 1.38473 * 120.04741 * 359.47320 * 24 23 22 26 26 F 1.35096 * 119.95838 * 180.23318 * 25 24 23 27 27 C 1.38477 * 120.08854 * 0.50327 * 25 24 23 28 28 C 1.38122 * 120.04219 * 359.77211 * 27 25 24 29 29 H 1.08996 * 109.46630 * 300.00102 * 1 2 3 30 30 H 1.08998 * 109.46638 * 59.99672 * 1 2 3 31 31 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47025 * 239.99540 * 2 1 3 33 33 H 1.09006 * 109.46909 * 120.00457 * 2 1 3 34 34 H 1.08997 * 109.47224 * 60.00176 * 6 4 3 35 35 H 1.08996 * 109.47117 * 299.99903 * 6 4 3 36 36 H 0.96697 * 113.99575 * 60.00133 * 9 7 6 37 37 H 1.09002 * 109.46707 * 24.26029 * 13 12 10 38 38 H 1.08997 * 109.46985 * 144.25774 * 13 12 10 39 39 H 0.96996 * 119.99935 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.02515 * 359.97438 * 23 22 12 41 41 H 1.08002 * 119.97389 * 179.72187 * 24 23 22 42 42 H 1.07992 * 119.98117 * 179.74649 * 27 25 24 43 43 H 1.07998 * 120.01891 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 6 5.4488 2.8571 0.0023 8 1 5.7802 2.2496 0.8444 9 8 5.8956 2.2633 -1.2183 10 6 6.0245 4.2442 0.1263 11 8 6.5479 4.7716 -0.8324 12 7 5.9578 4.8989 1.3025 13 6 5.4255 4.2226 2.4881 14 6 3.9654 4.5604 2.6459 15 1 3.4823 5.2139 1.9346 16 6 3.2464 4.0362 3.6991 17 7 3.8348 3.2408 4.5657 18 14 1.4363 4.4543 3.8944 19 1 1.0166 5.3613 2.7961 20 1 0.6318 3.2072 3.8419 21 1 1.2219 5.1272 5.2008 22 6 6.3972 6.2254 1.3913 23 6 7.0308 6.8219 0.3093 24 6 7.4682 8.1287 0.4009 25 6 7.2655 8.8477 1.5668 26 9 7.6899 10.1274 1.6527 27 6 6.6334 8.2549 2.6469 28 6 6.1996 6.9464 2.5614 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.5847 3.4692 0.8912 35 1 3.5853 3.4697 -0.8888 36 1 5.6361 2.7519 -2.0114 37 1 5.5387 3.1447 2.3729 38 1 5.9725 4.5531 3.3711 39 1 3.3289 2.8717 5.3064 40 1 7.1856 6.2628 -0.6017 41 1 7.9651 8.5915 -0.4390 42 1 6.4799 8.8159 3.5568 43 1 5.7070 6.4843 3.4042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362118366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -177.808350 kcal Electronic energy + Delta-G solvation = -30344.500378 eV Core-core repulsion = 25884.127188 eV Total energy + Delta-G solvation = -4460.373190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -48.50288 -40.78221 -39.99628 -38.19227 -36.66966 -35.81165 -35.53924 -32.94694 -31.91692 -31.06463 -30.71073 -29.06102 -27.66777 -25.52351 -23.71951 -23.06017 -22.46980 -21.80096 -20.67536 -19.61057 -17.77665 -17.34757 -17.21594 -17.02885 -16.87921 -16.45748 -16.03810 -15.51567 -15.24444 -15.16680 -15.02028 -14.58755 -14.43512 -14.03064 -13.71278 -13.55729 -13.15408 -13.07190 -12.76068 -12.72893 -12.64287 -12.37815 -12.14890 -12.06896 -11.79169 -11.53404 -11.40655 -11.34288 -11.22948 -10.99782 -10.81082 -10.44362 -10.37157 -10.34479 -10.25250 -10.04418 -9.31793 -8.93532 -8.77503 -8.69809 -7.37065 -6.49059 -4.60221 1.46527 1.66715 2.59969 2.65574 3.05926 3.06841 3.17025 3.18897 3.35745 4.07293 4.13920 4.52839 4.68361 4.72538 4.84408 4.87763 4.97534 5.02509 5.15927 5.21400 5.26165 5.28475 5.32399 5.71462 5.73448 5.75477 5.79938 5.86138 5.97417 5.98930 6.26300 6.28788 6.48898 6.59985 6.63739 6.70546 6.73512 6.85002 7.03656 7.41231 7.51226 7.62694 7.71975 7.82977 8.11679 8.36094 8.50386 9.08318 10.55960 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.004158 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.488656 B = 6732.798004 C = 8444.166917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.475 3.525 5 O -0.501 6.501 6 C -0.170 4.170 7 C 0.117 3.883 8 H 0.137 0.863 9 O -0.530 6.530 10 C 0.492 3.508 11 O -0.533 6.533 12 N -0.527 5.527 13 C 0.220 3.780 14 C -0.555 4.555 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.874 5.874 18 Si 0.894 3.106 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.158 3.842 23 C -0.152 4.152 24 C -0.139 4.139 25 C 0.054 3.946 26 F -0.152 7.152 27 C -0.136 4.136 28 C -0.112 4.112 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.375 0.625 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.271 0.729 40 H 0.188 0.812 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 0.156 -6.088 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.318 3.682 5 O -0.388 6.388 6 C -0.207 4.207 7 C 0.055 3.945 8 H 0.154 0.846 9 O -0.334 6.334 10 C 0.282 3.718 11 O -0.413 6.413 12 N -0.247 5.247 13 C 0.101 3.899 14 C -0.593 4.593 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.510 5.510 18 Si 0.720 3.280 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.205 1.205 22 C 0.062 3.938 23 C -0.172 4.172 24 C -0.158 4.158 25 C 0.034 3.966 26 F -0.131 7.131 27 C -0.155 4.155 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.187 0.813 35 H 0.121 0.879 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.204 0.796 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.529 -0.535 -5.989 6.204 hybrid contribution -1.245 0.747 0.209 1.467 sum -2.774 0.212 -5.780 6.414 Atomic orbital electron populations 1.21800 0.93001 1.02621 1.03530 1.22951 0.95099 0.80752 1.02420 1.86509 1.24897 1.31841 1.84377 1.23345 0.80324 0.92406 0.72110 1.90668 1.60153 1.42937 1.45046 1.22577 0.94930 0.93037 1.10136 1.21538 0.91596 0.91046 0.90326 0.84613 1.86709 1.79955 1.51988 1.14764 1.21533 0.79404 0.88604 0.82240 1.90260 1.44997 1.67031 1.39047 1.46076 1.56373 1.10286 1.11998 1.19890 0.95029 0.93371 0.81608 1.21343 0.93903 1.31706 1.12343 0.91015 1.24952 0.99116 0.94145 0.94944 1.69916 1.37068 1.30094 1.13915 0.86472 0.84015 0.78794 0.78695 1.19117 1.20373 1.20513 1.18091 0.96189 0.84727 0.94766 1.22677 0.98201 0.94820 1.01473 1.21055 1.02829 0.95183 0.96754 1.17750 1.02893 0.79553 0.96417 1.91427 1.88477 1.36303 1.96886 1.20885 1.00777 0.95716 0.98136 1.21044 1.00576 0.93195 0.98385 0.91379 0.91642 0.90515 0.91519 0.91233 0.81324 0.87902 0.77777 0.93171 0.93130 0.91948 0.79641 0.85364 0.85056 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.36 -5.87 10.22 -39.27 -0.40 -6.27 16 4 C 0.48 8.38 7.84 36.01 0.28 8.66 16 5 O -0.50 -9.87 15.17 -24.05 -0.36 -10.24 16 6 C -0.17 -2.81 5.38 -27.88 -0.15 -2.96 16 7 C 0.12 2.03 2.14 -27.89 -0.06 1.97 16 8 H 0.14 2.53 6.35 -51.93 -0.33 2.20 16 9 O -0.53 -8.87 12.29 -62.68 -0.77 -9.64 16 10 C 0.49 9.01 6.93 -10.99 -0.08 8.94 16 11 O -0.53 -10.05 12.71 -14.03 -0.18 -10.23 16 12 N -0.53 -10.01 2.69 -114.72 -0.31 -10.32 16 13 C 0.22 4.52 4.12 -5.19 -0.02 4.50 16 14 C -0.56 -12.15 5.95 -34.44 -0.21 -12.35 16 15 H 0.07 1.59 7.59 -52.49 -0.40 1.19 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.87 -21.39 13.29 55.43 0.74 -20.66 16 18 Si 0.89 18.43 29.54 -169.99 -5.02 13.41 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.16 2.94 6.47 -83.66 -0.54 2.40 16 23 C -0.15 -2.67 9.05 -39.40 -0.36 -3.03 16 24 C -0.14 -2.20 10.02 -39.54 -0.40 -2.60 16 25 C 0.05 0.87 7.30 -39.41 -0.29 0.58 16 26 F -0.15 -2.40 17.26 2.25 0.04 -2.36 16 27 C -0.14 -2.17 10.02 -39.54 -0.40 -2.56 16 28 C -0.11 -1.97 9.02 -39.40 -0.36 -2.33 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 34 H 0.17 3.14 4.17 -51.93 -0.22 2.92 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.37 5.01 8.71 45.56 0.40 5.41 16 37 H 0.05 1.07 5.93 -51.93 -0.31 0.76 16 38 H 0.05 1.10 6.86 -51.93 -0.36 0.74 16 39 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 40 H 0.19 3.37 4.53 -56.22 -0.25 3.12 16 41 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.15 2.79 6.14 -52.49 -0.32 2.47 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -26.64 364.20 -7.13 -33.77 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -4.31 Total: 14.33 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.05 Total: 2.73 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.43 Total: -30.98 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.71 Total: -36.38 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.64 -7.13 -33.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362118366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.038 kcal (2) G-P(sol) polarization free energy of solvation -26.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds