Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81399 * 109.46790 * 2 1 4 4 O 1.42098 * 108.57995 * 65.51362 * 3 2 1 5 5 O 1.42108 * 108.57878 * 294.48545 * 3 2 1 6 6 C 1.81393 * 101.91998 * 180.02562 * 3 2 1 7 7 C 1.53007 * 109.47204 * 179.97438 * 6 3 2 8 8 N 1.46504 * 109.47180 * 180.02562 * 7 6 3 9 9 C 1.46506 * 119.99601 * 269.99835 * 8 7 6 10 10 C 1.34771 * 120.00375 * 89.99796 * 8 7 6 11 11 O 1.21283 * 119.99496 * 0.02562 * 10 8 7 12 12 C 1.50697 * 120.00272 * 179.97438 * 10 8 7 13 13 H 1.09008 * 109.46887 * 60.00289 * 12 10 8 14 14 C 1.50692 * 109.47395 * 300.00409 * 12 10 8 15 15 H 1.08001 * 119.99945 * 325.22797 * 14 12 10 16 16 C 1.37883 * 120.00295 * 144.94863 * 14 12 10 17 17 N 1.31510 * 120.00060 * 184.98883 * 16 14 12 18 18 Si 1.86796 * 119.99545 * 4.99597 * 16 14 12 19 19 H 1.48503 * 109.47370 * 84.63958 * 18 16 14 20 20 H 1.48501 * 109.47199 * 204.63635 * 18 16 14 21 21 H 1.48495 * 109.47566 * 324.63579 * 18 16 14 22 22 C 1.50696 * 109.47228 * 179.97438 * 12 10 8 23 23 C 1.38243 * 119.99634 * 65.04882 * 22 12 10 24 24 C 1.38233 * 119.99809 * 179.80914 * 23 22 12 25 25 C 1.38238 * 119.99941 * 0.39588 * 24 23 22 26 26 C 1.38233 * 120.00182 * 359.85413 * 25 24 23 27 27 C 1.38231 * 119.99709 * 359.95996 * 26 25 24 28 28 H 1.08997 * 109.47292 * 60.00389 * 1 2 3 29 29 H 1.09000 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47434 * 300.00051 * 1 2 3 31 31 H 1.08998 * 109.47208 * 240.00407 * 2 1 3 32 32 H 1.08997 * 109.47292 * 119.99611 * 2 1 3 33 33 H 1.09003 * 109.47579 * 60.00177 * 6 3 2 34 34 H 1.09001 * 109.47606 * 299.99809 * 6 3 2 35 35 H 1.08996 * 109.46906 * 59.99978 * 7 6 3 36 36 H 1.09001 * 109.46830 * 299.99851 * 7 6 3 37 37 H 1.08994 * 109.47352 * 270.00063 * 9 8 7 38 38 H 1.09003 * 109.47202 * 30.00065 * 9 8 7 39 39 H 1.09002 * 109.46620 * 149.99676 * 9 8 7 40 40 H 0.97003 * 119.99910 * 180.02562 * 17 16 14 41 41 H 1.07997 * 119.99848 * 359.97438 * 23 22 12 42 42 H 1.08000 * 119.99928 * 180.23216 * 24 23 22 43 43 H 1.08001 * 119.99560 * 179.83314 * 25 24 23 44 44 H 1.08000 * 119.99980 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.99647 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3232 -1.2259 6 6 3.9328 1.4720 -0.0008 7 6 4.6280 2.8351 -0.0015 8 7 6.0803 2.6426 -0.0028 9 6 6.8075 2.5466 1.2654 10 6 6.7474 2.5540 -1.1705 11 8 6.1453 2.6339 -2.2203 12 6 8.2414 2.3566 -1.1717 13 1 8.4854 1.4268 -0.6578 14 6 8.9012 3.5108 -0.4623 15 1 8.4832 4.5034 -0.5415 16 6 10.0352 3.2985 0.2927 17 7 10.5546 4.2848 0.9906 18 14 10.8338 1.6102 0.3241 19 1 11.7460 1.4723 -0.8397 20 1 11.6082 1.4521 1.5813 21 1 9.7824 0.5638 0.2555 22 6 8.7380 2.2897 -2.5929 23 6 8.6357 3.3974 -3.4137 24 6 9.0949 3.3372 -4.7161 25 6 9.6489 2.1669 -5.2004 26 6 9.7464 1.0577 -4.3813 27 6 9.2908 1.1190 -3.0777 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.2253 0.9151 -0.8910 34 1 4.2260 0.9148 0.8890 35 1 4.3357 3.3924 0.8884 36 1 4.3348 3.3919 -0.8916 37 1 7.1229 3.5414 1.5797 38 1 6.1567 2.1146 2.0257 39 1 7.6840 1.9120 1.1344 40 1 11.3527 4.1355 1.5215 41 1 8.1996 4.3105 -3.0365 42 1 9.0185 4.2038 -5.3562 43 1 10.0052 2.1192 -6.2188 44 1 10.1789 0.1433 -4.7597 45 1 9.3666 0.2523 -2.4378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362317370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -77.618063 kcal Electronic energy + Delta-G solvation = -27870.011604 eV Core-core repulsion = 23980.196167 eV Total energy + Delta-G solvation = -3889.815438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.63305 -38.10125 -37.07230 -36.14860 -35.31109 -33.89015 -33.45254 -31.73407 -31.16578 -30.16035 -27.80838 -26.23062 -24.93684 -23.81739 -22.82813 -21.87845 -20.70098 -18.99536 -18.52210 -17.32489 -17.09282 -16.62839 -16.24725 -16.10752 -16.05686 -15.35624 -14.76300 -14.64427 -14.48523 -14.10843 -14.05768 -13.61637 -13.46849 -12.96495 -12.85069 -12.76234 -12.69989 -12.48425 -12.21113 -12.17548 -12.12653 -12.08735 -11.98096 -11.87438 -11.62561 -11.28080 -11.18021 -11.05653 -10.95682 -10.59674 -10.50326 -10.25591 -9.98333 -9.59160 -9.04929 -8.73232 -8.19688 -8.14903 -7.84578 -6.35763 -4.37827 -0.20152 2.12283 2.18781 2.59312 3.05920 3.16100 3.21886 3.33221 3.42912 3.72769 3.84062 4.15164 4.32948 4.40899 4.58146 4.62314 4.74355 4.87387 4.94998 5.24401 5.29068 5.34185 5.44429 5.52650 5.57966 5.59545 5.66329 5.69368 5.79641 5.90212 5.97478 6.15014 6.25092 6.31988 6.42044 6.59577 6.69786 6.82349 7.01291 7.14311 7.22053 7.23350 7.55266 7.75962 7.94625 8.18316 8.64156 8.94507 9.21468 10.75190 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003586 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.141453 B = 7806.911950 C = 8984.837164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.616 4.616 3 S 2.419 3.581 4 O -0.939 6.939 5 O -0.932 6.932 6 C -0.629 4.629 7 C 0.130 3.870 8 N -0.606 5.606 9 C 0.094 3.906 10 C 0.534 3.466 11 O -0.555 6.555 12 C 0.020 3.980 13 H 0.073 0.927 14 C -0.507 4.507 15 H 0.083 0.917 16 C 0.087 3.913 17 N -0.880 5.880 18 Si 0.861 3.139 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.263 1.263 22 C -0.029 4.029 23 C -0.072 4.072 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.138 4.138 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 -10.106 -0.168 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.745 4.745 3 S 2.600 3.400 4 O -0.936 6.936 5 O -0.929 6.929 6 C -0.759 4.759 7 C 0.004 3.996 8 N -0.340 5.340 9 C -0.049 4.049 10 C 0.324 3.676 11 O -0.433 6.433 12 C -0.001 4.001 13 H 0.091 0.909 14 C -0.544 4.544 15 H 0.101 0.899 16 C -0.117 4.117 17 N -0.516 5.516 18 Si 0.688 3.312 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.030 4.030 23 C -0.090 4.090 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.156 4.156 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.359 -9.202 -0.564 15.419 hybrid contribution 1.280 -1.792 0.193 2.210 sum -11.079 -10.994 -0.371 15.613 Atomic orbital electron populations 1.21508 0.90451 1.04726 1.03760 1.30227 1.07422 1.25296 1.11537 1.08102 0.78234 0.78183 0.75484 1.93582 1.81293 1.73075 1.45635 1.93610 1.81105 1.72872 1.45354 1.30810 1.23978 1.09203 1.11911 1.20919 0.82534 0.91687 1.04432 1.47640 1.05113 1.73523 1.07681 1.21820 0.95948 1.03724 0.83409 1.21336 0.90557 0.73591 0.82093 1.90610 1.70490 1.50915 1.31276 1.18603 0.88796 1.00832 0.91917 0.90908 1.20475 1.11242 0.93886 1.28801 0.89897 1.24920 0.96128 0.96555 0.94140 1.69849 1.21751 1.31775 1.28185 0.87123 0.80544 0.85113 0.78446 1.19101 1.20996 1.18853 1.20066 0.95206 0.92389 0.95335 1.20852 0.97199 0.98328 0.92661 1.21044 0.99976 0.97512 0.96099 1.20869 1.02271 0.93862 0.99072 1.20876 1.01409 0.98078 0.94300 1.20951 1.01603 0.97398 0.95633 0.90784 0.90215 0.90833 0.84961 0.85068 0.84540 0.84956 0.89330 0.88583 0.90931 0.93264 0.90372 0.92051 0.86472 0.87062 0.87295 0.87276 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.92 37.16 0.37 -0.66 16 2 C -0.62 -4.21 6.53 37.16 0.24 -3.97 16 3 S 2.42 25.68 4.72 -107.50 -0.51 25.18 16 4 O -0.94 -12.42 18.10 -57.83 -1.05 -13.47 16 5 O -0.93 -13.61 18.10 -57.83 -1.05 -14.66 16 6 C -0.63 -6.98 6.13 37.16 0.23 -6.75 16 7 C 0.13 1.95 5.42 -4.04 -0.02 1.93 16 8 N -0.61 -10.86 2.87 -181.56 -0.52 -11.38 16 9 C 0.09 1.55 9.15 59.85 0.55 2.10 16 10 C 0.53 11.31 6.96 -10.99 -0.08 11.23 16 11 O -0.55 -12.80 14.95 5.55 0.08 -12.72 16 12 C 0.02 0.44 1.10 -94.08 -0.10 0.33 16 13 H 0.07 1.56 4.14 -51.92 -0.21 1.35 16 14 C -0.51 -12.44 6.12 -34.44 -0.21 -12.66 16 15 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 16 C 0.09 2.20 5.40 -17.82 -0.10 2.11 16 17 N -0.88 -23.83 13.96 55.43 0.77 -23.06 16 18 Si 0.86 19.08 27.05 -169.99 -4.60 14.48 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.26 -5.36 6.06 56.52 0.34 -5.01 16 22 C -0.03 -0.64 4.10 -104.62 -0.43 -1.06 16 23 C -0.07 -1.56 8.25 -39.58 -0.33 -1.89 16 24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 25 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.13 -2.28 10.05 -39.59 -0.40 -2.68 16 27 C -0.14 -2.75 9.48 -39.59 -0.38 -3.12 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.52 8.14 -51.92 -0.42 1.10 16 34 H 0.13 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.10 1.58 7.42 -51.93 -0.39 1.20 16 37 H 0.07 1.31 7.88 -51.93 -0.41 0.90 16 38 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.08 1.38 5.93 -51.93 -0.31 1.07 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.12 2.62 7.93 -52.49 -0.42 2.21 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.96 7.95 -52.48 -0.42 1.54 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -34.14 383.63 -9.36 -43.50 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.83 Total: 7.10 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.45 Total: -20.76 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.25 Total: -34.44 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -2.01 Total: -40.84 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.60 Total: 14.48 kcal Atomic # 16 Polarization: 25.68 SS G_CDS: -0.51 Total: 25.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.14 -9.36 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362317370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.120 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds