Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81399 * 109.46790 * 2 1 4 4 O 1.42098 * 108.57995 * 65.51362 * 3 2 1 5 5 O 1.42108 * 108.57878 * 294.48545 * 3 2 1 6 6 C 1.81393 * 101.91998 * 180.02562 * 3 2 1 7 7 C 1.53007 * 109.47204 * 179.97438 * 6 3 2 8 8 N 1.46504 * 109.47180 * 180.02562 * 7 6 3 9 9 C 1.46506 * 119.99601 * 269.99835 * 8 7 6 10 10 C 1.34771 * 120.00375 * 89.99796 * 8 7 6 11 11 O 1.21283 * 119.99496 * 0.02562 * 10 8 7 12 12 C 1.50697 * 120.00272 * 179.97438 * 10 8 7 13 13 H 1.09008 * 109.46887 * 60.00289 * 12 10 8 14 14 C 1.50692 * 109.47395 * 300.00409 * 12 10 8 15 15 H 1.08001 * 119.99945 * 325.22797 * 14 12 10 16 16 C 1.37883 * 120.00295 * 144.94863 * 14 12 10 17 17 N 1.31510 * 120.00060 * 184.98883 * 16 14 12 18 18 Si 1.86796 * 119.99545 * 4.99597 * 16 14 12 19 19 H 1.48503 * 109.47370 * 84.63958 * 18 16 14 20 20 H 1.48501 * 109.47199 * 204.63635 * 18 16 14 21 21 H 1.48495 * 109.47566 * 324.63579 * 18 16 14 22 22 C 1.50696 * 109.47228 * 179.97438 * 12 10 8 23 23 C 1.38243 * 119.99634 * 65.04882 * 22 12 10 24 24 C 1.38233 * 119.99809 * 179.80914 * 23 22 12 25 25 C 1.38238 * 119.99941 * 0.39588 * 24 23 22 26 26 C 1.38233 * 120.00182 * 359.85413 * 25 24 23 27 27 C 1.38231 * 119.99709 * 359.95996 * 26 25 24 28 28 H 1.08997 * 109.47292 * 60.00389 * 1 2 3 29 29 H 1.09000 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47434 * 300.00051 * 1 2 3 31 31 H 1.08998 * 109.47208 * 240.00407 * 2 1 3 32 32 H 1.08997 * 109.47292 * 119.99611 * 2 1 3 33 33 H 1.09003 * 109.47579 * 60.00177 * 6 3 2 34 34 H 1.09001 * 109.47606 * 299.99809 * 6 3 2 35 35 H 1.08996 * 109.46906 * 59.99978 * 7 6 3 36 36 H 1.09001 * 109.46830 * 299.99851 * 7 6 3 37 37 H 1.08994 * 109.47352 * 270.00063 * 9 8 7 38 38 H 1.09003 * 109.47202 * 30.00065 * 9 8 7 39 39 H 1.09002 * 109.46620 * 149.99676 * 9 8 7 40 40 H 0.97003 * 119.99910 * 180.02562 * 17 16 14 41 41 H 1.07997 * 119.99848 * 359.97438 * 23 22 12 42 42 H 1.08000 * 119.99928 * 180.23216 * 24 23 22 43 43 H 1.08001 * 119.99560 * 179.83314 * 25 24 23 44 44 H 1.08000 * 119.99980 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.99647 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3232 -1.2259 6 6 3.9328 1.4720 -0.0008 7 6 4.6280 2.8351 -0.0015 8 7 6.0803 2.6426 -0.0028 9 6 6.8075 2.5466 1.2654 10 6 6.7474 2.5540 -1.1705 11 8 6.1453 2.6339 -2.2203 12 6 8.2414 2.3566 -1.1717 13 1 8.4854 1.4268 -0.6578 14 6 8.9012 3.5108 -0.4623 15 1 8.4832 4.5034 -0.5415 16 6 10.0352 3.2985 0.2927 17 7 10.5546 4.2848 0.9906 18 14 10.8338 1.6102 0.3241 19 1 11.7460 1.4723 -0.8397 20 1 11.6082 1.4521 1.5813 21 1 9.7824 0.5638 0.2555 22 6 8.7380 2.2897 -2.5929 23 6 8.6357 3.3974 -3.4137 24 6 9.0949 3.3372 -4.7161 25 6 9.6489 2.1669 -5.2004 26 6 9.7464 1.0577 -4.3813 27 6 9.2908 1.1190 -3.0777 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.2253 0.9151 -0.8910 34 1 4.2260 0.9148 0.8890 35 1 4.3357 3.3924 0.8884 36 1 4.3348 3.3919 -0.8916 37 1 7.1229 3.5414 1.5797 38 1 6.1567 2.1146 2.0257 39 1 7.6840 1.9120 1.1344 40 1 11.3527 4.1355 1.5215 41 1 8.1996 4.3105 -3.0365 42 1 9.0185 4.2038 -5.3562 43 1 10.0052 2.1192 -6.2188 44 1 10.1789 0.1433 -4.7597 45 1 9.3666 0.2523 -2.4378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362317370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -101.454664 kcal Electronic energy + Delta-G solvation = -27871.045237 eV Core-core repulsion = 23980.196167 eV Total energy + Delta-G solvation = -3890.849070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.21635 -39.57704 -38.03149 -37.11884 -36.77649 -35.64755 -34.00907 -33.46378 -32.41402 -31.64081 -29.41791 -27.60289 -26.15982 -25.09105 -24.03416 -23.37344 -22.15771 -20.05387 -19.84571 -19.15701 -18.22575 -17.93566 -17.62663 -17.17629 -17.01722 -16.77941 -16.33300 -15.98426 -15.55507 -15.48118 -15.24085 -14.91972 -14.65372 -14.29237 -14.26514 -14.03737 -13.96219 -13.77788 -13.54024 -13.49238 -13.31866 -13.17058 -13.06964 -13.01539 -12.94451 -12.62630 -12.42731 -12.32912 -12.03579 -11.98246 -11.93703 -11.62914 -11.41572 -11.34538 -10.88704 -10.50788 -9.67162 -9.62785 -9.38284 -8.32300 -6.38211 -1.02712 0.62849 0.69182 1.30053 1.40267 1.43442 1.75340 1.81014 2.15903 2.29969 2.68591 2.97188 3.06565 3.13600 3.59256 3.66591 3.76555 3.93285 4.05953 4.15138 4.19999 4.25528 4.32140 4.37117 4.41122 4.42405 4.52734 4.55495 4.73058 4.75466 4.80361 4.85887 4.88694 4.91507 5.13004 5.17545 5.19160 5.30645 5.39642 5.63168 5.68974 5.73249 5.93949 6.20085 6.27823 6.43672 6.60885 7.23617 7.31899 8.82379 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003586 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.141453 B = 7806.911950 C = 8984.837164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.587 4.587 3 S 2.420 3.580 4 O -0.971 6.971 5 O -0.984 6.984 6 C -0.624 4.624 7 C 0.114 3.886 8 N -0.603 5.603 9 C 0.092 3.908 10 C 0.526 3.474 11 O -0.582 6.582 12 C 0.024 3.976 13 H 0.083 0.917 14 C -0.493 4.493 15 H 0.033 0.967 16 C 0.044 3.956 17 N -0.928 5.928 18 Si 0.913 3.087 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.230 1.230 22 C -0.057 4.057 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.124 4.124 27 C -0.152 4.152 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.270 0.730 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.874 -14.493 -0.572 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.720 4.720 3 S 2.606 3.394 4 O -0.968 6.968 5 O -0.981 6.981 6 C -0.754 4.754 7 C -0.010 4.010 8 N -0.335 5.335 9 C -0.050 4.050 10 C 0.317 3.683 11 O -0.462 6.462 12 C 0.002 3.998 13 H 0.101 0.899 14 C -0.531 4.531 15 H 0.052 0.948 16 C -0.156 4.156 17 N -0.566 5.566 18 Si 0.737 3.263 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.153 1.153 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.142 4.142 27 C -0.170 4.170 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.185 0.815 33 H 0.156 0.844 34 H 0.187 0.813 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.510 -13.549 -0.950 18.466 hybrid contribution 1.223 -0.385 0.260 1.308 sum -11.287 -13.934 -0.690 17.945 Atomic orbital electron populations 1.21712 0.90418 1.06322 1.03577 1.29998 1.07220 1.20168 1.14578 1.07854 0.77605 0.80212 0.73749 1.93537 1.81453 1.75524 1.46274 1.93546 1.81647 1.75794 1.47115 1.30729 1.24035 1.06772 1.13839 1.21139 0.81082 0.94563 1.04186 1.47676 1.06464 1.72200 1.07163 1.21868 0.96816 1.02468 0.83834 1.21251 0.90475 0.73878 0.82735 1.90580 1.70846 1.52423 1.32399 1.18517 0.89192 0.99716 0.92327 0.89901 1.20304 1.11164 0.92794 1.28804 0.94844 1.25565 0.96408 1.00075 0.93590 1.69983 1.22605 1.34213 1.29758 0.86262 0.80213 0.81729 0.78091 1.19692 1.20678 1.15336 1.20125 0.96792 0.93639 0.95280 1.20822 0.99319 0.97624 0.94575 1.21350 0.99418 0.99361 0.95066 1.21348 1.00534 0.92719 1.00844 1.21371 0.99863 0.99679 0.93252 1.21236 1.01542 0.97008 0.97190 0.91521 0.87538 0.90848 0.82614 0.81500 0.84390 0.81268 0.87498 0.91204 0.93505 0.88385 0.91277 0.92043 0.89570 0.84986 0.83251 0.83280 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.92 71.98 0.71 -1.07 16 2 C -0.59 -5.79 6.53 71.98 0.47 -5.32 16 3 S 2.42 49.05 4.72 -56.49 -0.27 48.79 16 4 O -0.97 -25.07 18.10 -127.37 -2.31 -27.38 16 5 O -0.98 -29.59 18.10 -127.37 -2.31 -31.90 16 6 C -0.62 -12.86 6.13 71.98 0.44 -12.42 16 7 C 0.11 3.49 5.42 86.38 0.47 3.96 16 8 N -0.60 -21.95 2.87 -846.73 -2.43 -24.39 16 9 C 0.09 3.03 9.15 127.77 1.17 4.20 16 10 C 0.53 23.08 6.96 87.66 0.61 23.69 16 11 O -0.58 -28.06 14.95 -3.04 -0.05 -28.11 16 12 C 0.02 1.07 1.10 -13.04 -0.01 1.05 16 13 H 0.08 3.48 4.14 -2.38 -0.01 3.47 16 14 C -0.49 -25.52 6.12 25.60 0.16 -25.36 16 15 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 16 C 0.04 2.29 5.40 84.66 0.46 2.75 16 17 N -0.93 -52.43 13.96 21.45 0.30 -52.13 16 18 Si 0.91 38.78 27.05 68.60 1.86 40.64 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.23 -8.44 6.06 99.48 0.60 -7.84 16 22 C -0.06 -2.54 4.10 -19.87 -0.08 -2.62 16 23 C -0.10 -4.72 8.25 22.27 0.18 -4.53 16 24 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 25 C -0.14 -4.30 10.05 22.27 0.22 -4.07 16 26 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 27 C -0.15 -5.74 9.48 22.27 0.21 -5.53 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.17 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.17 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.78 8.07 -2.39 -0.02 2.76 16 36 H 0.07 2.48 7.42 -2.39 -0.02 2.46 16 37 H 0.05 1.77 7.88 -2.39 -0.02 1.75 16 38 H 0.10 2.23 8.07 -2.39 -0.02 2.21 16 39 H 0.07 2.39 5.93 -2.39 -0.01 2.37 16 40 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.09 4.25 7.93 -2.91 -0.02 4.22 16 42 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.12 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -80.48 383.63 1.13 -79.36 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.87 Total: 28.83 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 5.46 Total: -33.73 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.13 Total: -76.51 kcal Atomic # 8 Polarization: -82.72 SS G_CDS: -4.66 Total: -87.38 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.86 Total: 40.64 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.27 Total: 48.79 kcal Total: -80.48 1.13 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362317370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.096 kcal (2) G-P(sol) polarization free energy of solvation -80.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds