Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46901 * 2 1 4 4 C 1.46497 * 120.00009 * 268.10734 * 3 2 1 5 5 C 1.53007 * 109.47207 * 270.00305 * 4 3 2 6 6 S 1.81402 * 109.47310 * 180.02562 * 5 4 3 7 7 C 1.81397 * 101.92345 * 179.97438 * 6 5 4 8 8 O 1.42100 * 108.57670 * 294.49069 * 6 5 4 9 9 O 1.42102 * 108.57974 * 65.50990 * 6 5 4 10 10 C 1.34774 * 119.99893 * 88.11059 * 3 2 1 11 11 O 1.21291 * 120.00015 * 184.72750 * 10 3 2 12 12 C 1.50697 * 120.00457 * 4.72521 * 10 3 2 13 13 H 1.09000 * 109.46620 * 31.49470 * 12 10 3 14 14 C 1.50696 * 109.47102 * 271.49969 * 12 10 3 15 15 H 1.08001 * 120.00284 * 116.79093 * 14 12 10 16 16 C 1.37881 * 119.99959 * 296.50897 * 14 12 10 17 17 N 1.31514 * 119.99871 * 4.93635 * 16 14 12 18 18 Si 1.86798 * 120.00131 * 184.92820 * 16 14 12 19 19 H 1.48502 * 109.47225 * 60.00156 * 18 16 14 20 20 H 1.48497 * 109.47133 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47068 * 300.00122 * 18 16 14 22 22 C 1.50701 * 109.47416 * 151.49509 * 12 10 3 23 23 C 1.38230 * 119.99750 * 321.51319 * 22 12 10 24 24 C 1.38244 * 119.99695 * 179.80939 * 23 22 12 25 25 C 1.38233 * 119.99910 * 0.39509 * 24 23 22 26 26 C 1.38240 * 119.99834 * 359.85135 * 25 24 23 27 27 C 1.38224 * 119.99966 * 359.96725 * 26 25 24 28 28 H 1.09001 * 109.47302 * 304.30223 * 1 2 3 29 29 H 1.09003 * 109.46670 * 64.30239 * 1 2 3 30 30 H 1.09000 * 109.46953 * 184.29881 * 1 2 3 31 31 H 1.08994 * 109.47195 * 240.00177 * 2 1 3 32 32 H 1.09000 * 109.46840 * 119.99513 * 2 1 3 33 33 H 1.09001 * 109.47566 * 30.00194 * 4 3 2 34 34 H 1.09000 * 109.47318 * 150.00158 * 4 3 2 35 35 H 1.08995 * 109.46851 * 299.99947 * 5 4 3 36 36 H 1.09000 * 109.47101 * 59.99720 * 5 4 3 37 37 H 1.08997 * 109.46895 * 59.99550 * 7 6 5 38 38 H 1.09000 * 109.47278 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.46601 * 300.00018 * 7 6 5 40 40 H 0.96999 * 119.99951 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00699 * 359.97438 * 23 22 12 42 42 H 1.07997 * 120.00039 * 180.22613 * 24 23 22 43 43 H 1.07998 * 120.00259 * 179.83623 * 25 24 23 44 44 H 1.07996 * 119.99455 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99773 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3020 2.0579 -1.2680 5 6 3.7600 1.8129 -1.6619 6 16 4.1115 2.6513 -3.2316 7 6 5.8566 2.2337 -3.4971 8 8 3.3382 2.0394 -4.2548 9 8 4.0079 4.0540 -3.0288 10 6 2.2066 2.0294 1.1666 11 8 2.5282 3.1989 1.1655 12 6 2.0176 1.3012 2.4723 13 1 2.2848 0.2521 2.3451 14 6 0.5765 1.4041 2.9008 15 1 -0.0275 0.5125 2.9826 16 6 0.0307 2.6358 3.1940 17 7 0.7370 3.7293 3.0070 18 14 -1.7120 2.7514 3.8566 19 1 -1.8056 2.0038 5.1363 20 1 -2.0598 4.1763 4.0887 21 1 -2.6561 2.1661 2.8711 22 6 2.9002 1.9204 3.5252 23 6 4.1718 2.3505 3.1955 24 6 4.9801 2.9221 4.1605 25 6 4.5195 3.0561 5.4569 26 6 3.2497 2.6212 5.7878 27 6 2.4403 2.0531 4.8220 28 1 -0.3634 0.5791 0.8489 29 1 -0.3633 0.4456 -0.9261 30 1 -0.3633 -1.0248 0.0770 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6451 1.6654 -2.0443 34 1 2.1312 3.1284 -1.1547 35 1 4.4169 2.2054 -0.8857 36 1 3.9308 0.7423 -1.7751 37 1 5.9660 1.1509 -3.5566 38 1 6.2011 2.6858 -4.4271 39 1 6.4515 2.6138 -2.6666 40 1 0.3532 4.5959 3.2136 41 1 4.5331 2.2425 2.1834 42 1 5.9722 3.2615 3.9021 43 1 5.1519 3.5002 6.2115 44 1 2.8901 2.7255 6.8008 45 1 1.4480 1.7138 5.0804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362500468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -65.993973 kcal Electronic energy + Delta-G solvation = -28701.782604 eV Core-core repulsion = 24812.471225 eV Total energy + Delta-G solvation = -3889.311379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.32456 -37.77246 -36.97818 -36.03490 -35.17684 -33.73482 -32.07314 -30.76397 -29.81509 -29.75552 -28.91013 -27.32561 -24.42463 -23.12113 -22.62092 -21.33712 -20.35962 -18.88838 -18.22429 -16.98599 -16.71375 -16.25153 -16.08200 -15.86252 -15.58474 -15.05844 -14.76768 -14.12195 -13.91835 -13.81472 -13.54887 -13.40496 -13.34681 -13.09807 -12.81746 -12.47169 -12.29270 -12.21584 -12.08367 -11.99620 -11.96620 -11.68952 -11.37757 -11.34129 -11.14752 -10.94771 -10.92152 -10.81051 -10.63394 -10.52034 -10.38511 -10.08144 -9.62332 -9.40748 -8.68155 -8.25689 -7.89424 -7.77395 -7.41568 -6.03276 -4.23795 -0.07990 2.48293 2.54050 2.69456 3.23019 3.30517 3.32337 3.51472 3.88431 3.95269 4.10493 4.34555 4.60957 4.64353 4.81766 4.91203 4.96023 5.17940 5.40368 5.43650 5.47950 5.65763 5.78633 5.79958 5.87685 5.92916 5.99542 6.08122 6.15799 6.29496 6.39108 6.50739 6.59206 6.72350 6.79039 7.01655 7.09145 7.13459 7.35889 7.47371 7.57460 7.70610 7.77036 8.09456 8.20760 8.38355 8.76347 9.40511 9.61380 10.91828 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.004322 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.233776 B = 6477.005836 C = 7793.418081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.118 3.882 3 N -0.623 5.623 4 C 0.132 3.868 5 C -0.622 4.622 6 S 2.421 3.579 7 C -0.657 4.657 8 O -0.945 6.945 9 O -0.934 6.934 10 C 0.526 3.474 11 O -0.504 6.504 12 C 0.065 3.935 13 H 0.053 0.947 14 C -0.541 4.541 15 H 0.067 0.933 16 C 0.075 3.925 17 N -0.817 5.817 18 Si 0.881 3.119 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.001 4.001 23 C -0.114 4.114 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.071 4.071 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.264 0.736 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -7.732 -6.949 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.006 4.006 3 N -0.360 5.360 4 C 0.006 3.994 5 C -0.754 4.754 6 S 2.602 3.398 7 C -0.806 4.806 8 O -0.942 6.942 9 O -0.932 6.932 10 C 0.317 3.683 11 O -0.375 6.375 12 C 0.044 3.956 13 H 0.071 0.929 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.448 5.448 18 Si 0.708 3.292 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.002 4.002 23 C -0.132 4.132 24 C -0.155 4.155 25 C -0.165 4.165 26 C -0.159 4.159 27 C -0.089 4.089 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.865 -6.304 -7.441 12.529 hybrid contribution -0.443 -0.178 0.703 0.849 sum 7.423 -6.483 -6.739 11.939 Atomic orbital electron populations 1.22374 0.96196 1.01675 1.03731 1.21371 0.94791 0.82877 1.01532 1.48161 1.68976 1.14139 1.04743 1.20767 0.89284 1.00852 0.88480 1.30793 1.09149 1.14015 1.21397 1.07829 0.77961 0.76373 0.77623 1.30283 1.26291 1.12221 1.11843 1.93582 1.67108 1.78703 1.54766 1.93626 1.85378 1.28240 1.85906 1.21675 0.74201 0.87768 0.84706 1.90635 1.44914 1.15638 1.86328 1.17920 0.96421 0.93629 0.87657 0.92931 1.20489 0.94036 0.93445 1.49853 0.91470 1.25092 0.97300 0.96083 0.95070 1.70198 1.35666 0.97619 1.41279 0.86839 0.85315 0.77288 0.79796 1.19934 1.21262 1.20159 1.19802 0.91600 0.94275 0.94564 1.20845 0.94803 0.99907 0.97623 1.20784 0.99070 1.01875 0.93755 1.20751 0.96563 1.03115 0.96100 1.20989 0.94744 1.01438 0.98755 1.21055 0.98673 0.96748 0.92434 0.88816 0.93814 0.92922 0.92389 0.90162 0.90308 0.88706 0.84661 0.85254 0.85504 0.85514 0.85303 0.92580 0.88267 0.88127 0.88151 0.87971 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 10.21 37.16 0.38 -2.45 16 2 C 0.12 1.76 5.97 -4.04 -0.02 1.74 16 3 N -0.62 -11.32 2.47 -173.68 -0.43 -11.75 16 4 C 0.13 2.12 5.44 -4.04 -0.02 2.10 16 5 C -0.62 -7.21 6.13 37.16 0.23 -6.99 16 6 S 2.42 26.57 5.36 -107.50 -0.58 25.99 16 7 C -0.66 -4.36 10.62 101.05 1.07 -3.28 16 8 O -0.94 -12.96 18.10 -57.83 -1.05 -14.01 16 9 O -0.93 -14.67 18.10 -57.83 -1.05 -15.71 16 10 C 0.53 11.77 5.42 -10.99 -0.06 11.71 16 11 O -0.50 -13.14 13.01 5.55 0.07 -13.07 16 12 C 0.06 1.44 2.14 -94.08 -0.20 1.24 16 13 H 0.05 1.05 6.03 -51.93 -0.31 0.74 16 14 C -0.54 -12.78 5.45 -34.44 -0.19 -12.97 16 15 H 0.07 1.53 7.52 -52.49 -0.39 1.14 16 16 C 0.07 1.89 4.02 -17.82 -0.07 1.81 16 17 N -0.82 -22.39 9.94 55.43 0.55 -21.84 16 18 Si 0.88 19.84 29.54 -169.99 -5.02 14.82 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.00 -0.03 4.19 -104.63 -0.44 -0.47 16 23 C -0.11 -2.45 8.43 -39.58 -0.33 -2.78 16 24 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 25 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 26 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 27 C -0.07 -1.59 8.15 -39.59 -0.32 -1.91 16 28 H 0.09 1.80 5.71 -51.93 -0.30 1.50 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 32 H 0.08 1.18 5.82 -51.93 -0.30 0.88 16 33 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.09 1.78 7.36 -51.93 -0.38 1.40 16 35 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.13 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.10 2.06 7.09 -52.49 -0.37 1.69 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.13 2.88 6.37 -52.49 -0.33 2.55 16 LS Contribution 375.66 15.07 5.66 5.66 Total: -1.00 -35.09 375.66 -9.60 -44.69 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.60 Total: 6.98 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.17 Total: -21.76 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.12 Total: -33.59 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -2.02 Total: -42.79 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 26.57 SS G_CDS: -0.58 Total: 25.99 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.09 -9.60 -44.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362500468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.300 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds