Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46901 * 2 1 4 4 C 1.46497 * 120.00009 * 268.10734 * 3 2 1 5 5 C 1.53007 * 109.47207 * 270.00305 * 4 3 2 6 6 S 1.81402 * 109.47310 * 180.02562 * 5 4 3 7 7 C 1.81397 * 101.92345 * 179.97438 * 6 5 4 8 8 O 1.42100 * 108.57670 * 294.49069 * 6 5 4 9 9 O 1.42102 * 108.57974 * 65.50990 * 6 5 4 10 10 C 1.34774 * 119.99893 * 88.11059 * 3 2 1 11 11 O 1.21291 * 120.00015 * 184.72750 * 10 3 2 12 12 C 1.50697 * 120.00457 * 4.72521 * 10 3 2 13 13 H 1.09000 * 109.46620 * 31.49470 * 12 10 3 14 14 C 1.50696 * 109.47102 * 271.49969 * 12 10 3 15 15 H 1.08001 * 120.00284 * 116.79093 * 14 12 10 16 16 C 1.37881 * 119.99959 * 296.50897 * 14 12 10 17 17 N 1.31514 * 119.99871 * 4.93635 * 16 14 12 18 18 Si 1.86798 * 120.00131 * 184.92820 * 16 14 12 19 19 H 1.48502 * 109.47225 * 60.00156 * 18 16 14 20 20 H 1.48497 * 109.47133 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47068 * 300.00122 * 18 16 14 22 22 C 1.50701 * 109.47416 * 151.49509 * 12 10 3 23 23 C 1.38230 * 119.99750 * 321.51319 * 22 12 10 24 24 C 1.38244 * 119.99695 * 179.80939 * 23 22 12 25 25 C 1.38233 * 119.99910 * 0.39509 * 24 23 22 26 26 C 1.38240 * 119.99834 * 359.85135 * 25 24 23 27 27 C 1.38224 * 119.99966 * 359.96725 * 26 25 24 28 28 H 1.09001 * 109.47302 * 304.30223 * 1 2 3 29 29 H 1.09003 * 109.46670 * 64.30239 * 1 2 3 30 30 H 1.09000 * 109.46953 * 184.29881 * 1 2 3 31 31 H 1.08994 * 109.47195 * 240.00177 * 2 1 3 32 32 H 1.09000 * 109.46840 * 119.99513 * 2 1 3 33 33 H 1.09001 * 109.47566 * 30.00194 * 4 3 2 34 34 H 1.09000 * 109.47318 * 150.00158 * 4 3 2 35 35 H 1.08995 * 109.46851 * 299.99947 * 5 4 3 36 36 H 1.09000 * 109.47101 * 59.99720 * 5 4 3 37 37 H 1.08997 * 109.46895 * 59.99550 * 7 6 5 38 38 H 1.09000 * 109.47278 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.46601 * 300.00018 * 7 6 5 40 40 H 0.96999 * 119.99951 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00699 * 359.97438 * 23 22 12 42 42 H 1.07997 * 120.00039 * 180.22613 * 24 23 22 43 43 H 1.07998 * 120.00259 * 179.83623 * 25 24 23 44 44 H 1.07996 * 119.99455 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99773 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3020 2.0579 -1.2680 5 6 3.7600 1.8129 -1.6619 6 16 4.1115 2.6513 -3.2316 7 6 5.8566 2.2337 -3.4971 8 8 3.3382 2.0394 -4.2548 9 8 4.0079 4.0540 -3.0288 10 6 2.2066 2.0294 1.1666 11 8 2.5282 3.1989 1.1655 12 6 2.0176 1.3012 2.4723 13 1 2.2848 0.2521 2.3451 14 6 0.5765 1.4041 2.9008 15 1 -0.0275 0.5125 2.9826 16 6 0.0307 2.6358 3.1940 17 7 0.7370 3.7293 3.0070 18 14 -1.7120 2.7514 3.8566 19 1 -1.8056 2.0038 5.1363 20 1 -2.0598 4.1763 4.0887 21 1 -2.6561 2.1661 2.8711 22 6 2.9002 1.9204 3.5252 23 6 4.1718 2.3505 3.1955 24 6 4.9801 2.9221 4.1605 25 6 4.5195 3.0561 5.4569 26 6 3.2497 2.6212 5.7878 27 6 2.4403 2.0531 4.8220 28 1 -0.3634 0.5791 0.8489 29 1 -0.3633 0.4456 -0.9261 30 1 -0.3633 -1.0248 0.0770 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6451 1.6654 -2.0443 34 1 2.1312 3.1284 -1.1547 35 1 4.4169 2.2054 -0.8857 36 1 3.9308 0.7423 -1.7751 37 1 5.9660 1.1509 -3.5566 38 1 6.2011 2.6858 -4.4271 39 1 6.4515 2.6138 -2.6666 40 1 0.3532 4.5959 3.2136 41 1 4.5331 2.2425 2.1834 42 1 5.9722 3.2615 3.9021 43 1 5.1519 3.5002 6.2115 44 1 2.8901 2.7255 6.8008 45 1 1.4480 1.7138 5.0804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362500468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -90.113161 kcal Electronic energy + Delta-G solvation = -28702.828491 eV Core-core repulsion = 24812.471225 eV Total energy + Delta-G solvation = -3890.357266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.92939 -39.31314 -37.98574 -37.05476 -36.70337 -35.48988 -33.37955 -32.41828 -31.35963 -30.53835 -30.13938 -28.97388 -26.05688 -24.50326 -24.01044 -22.94060 -21.92056 -19.80373 -19.78548 -18.55742 -17.85620 -17.65807 -17.22475 -17.05151 -16.91599 -16.59269 -16.40097 -15.66027 -15.41585 -15.13977 -14.84206 -14.47289 -14.44001 -14.09334 -13.95770 -13.90798 -13.87979 -13.76434 -13.35436 -13.15830 -13.10728 -13.02219 -12.97373 -12.76839 -12.64867 -12.51987 -12.22888 -12.20904 -11.99823 -11.86457 -11.71977 -11.55636 -11.30042 -11.13508 -10.57334 -9.99386 -9.41865 -9.32602 -9.04596 -7.95631 -6.17190 -0.92959 0.88347 0.94728 1.40662 1.43692 1.48432 1.88128 2.31283 2.39669 2.50636 2.84752 3.13492 3.26326 3.33711 3.72805 3.78698 4.12826 4.20163 4.26586 4.31815 4.35955 4.37055 4.42486 4.50424 4.58797 4.68209 4.71647 4.80117 4.94223 4.98545 5.00140 5.02866 5.12954 5.15453 5.23528 5.48844 5.54985 5.66928 5.74132 5.89364 5.95711 6.00191 6.02238 6.42773 6.53925 6.70789 6.99501 7.48056 7.96248 8.97041 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012018 B = 0.004322 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.233776 B = 6477.005836 C = 7793.418081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 N -0.622 5.622 4 C 0.120 3.880 5 C -0.618 4.618 6 S 2.426 3.574 7 C -0.627 4.627 8 O -0.976 6.976 9 O -0.994 6.994 10 C 0.526 3.474 11 O -0.551 6.551 12 C 0.058 3.942 13 H 0.071 0.929 14 C -0.526 4.526 15 H 0.072 0.928 16 C 0.037 3.963 17 N -0.852 5.852 18 Si 0.927 3.073 19 H -0.263 1.263 20 H -0.301 1.301 21 H -0.273 1.273 22 C -0.022 4.022 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.094 4.094 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.132 0.868 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 -10.062 -7.463 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.011 4.011 3 N -0.357 5.357 4 C -0.005 4.005 5 C -0.748 4.748 6 S 2.612 3.388 7 C -0.781 4.781 8 O -0.974 6.974 9 O -0.991 6.991 10 C 0.317 3.683 11 O -0.427 6.427 12 C 0.036 3.964 13 H 0.089 0.911 14 C -0.564 4.564 15 H 0.090 0.910 16 C -0.169 4.169 17 N -0.485 5.485 18 Si 0.753 3.247 19 H -0.188 1.188 20 H -0.228 1.228 21 H -0.199 1.199 22 C -0.023 4.023 23 C -0.148 4.148 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.112 4.112 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.188 0.812 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.143 0.857 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.910 -8.689 -7.963 15.398 hybrid contribution -1.021 0.434 0.802 1.369 sum 8.889 -8.254 -7.162 14.087 Atomic orbital electron populations 1.22313 0.96725 1.02723 1.01927 1.21655 0.94359 0.81296 1.03817 1.48118 1.68042 1.15217 1.04357 1.20883 0.93033 0.98529 0.88020 1.30696 1.05599 1.16834 1.21650 1.07370 0.80203 0.74731 0.76490 1.30020 1.19834 1.14837 1.13426 1.93535 1.69937 1.78645 1.55240 1.93556 1.87347 1.31869 1.86372 1.21575 0.73798 0.87122 0.85842 1.90604 1.47303 1.17542 1.87219 1.18011 0.95645 0.94735 0.87970 0.91139 1.20723 0.94842 0.93051 1.47808 0.90999 1.25603 0.99660 0.96040 0.95599 1.70396 1.36780 0.97426 1.43874 0.86104 0.82475 0.76339 0.79751 1.18792 1.22755 1.19865 1.19920 0.92361 0.95276 0.94773 1.20964 0.94912 1.00720 0.98187 1.21168 1.00107 1.00775 0.93667 1.21148 0.96413 1.02098 0.96724 1.21298 0.95124 1.00633 0.99424 1.21040 0.98561 0.98415 0.93187 0.92792 0.93737 0.90053 0.88039 0.89848 0.88398 0.92802 0.84994 0.81156 0.82027 0.83891 0.83467 0.94135 0.88361 0.85210 0.84616 0.85726 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.34 10.21 71.98 0.74 -4.60 16 2 C 0.11 3.09 5.97 86.38 0.52 3.61 16 3 N -0.62 -22.45 2.47 -821.80 -2.03 -24.48 16 4 C 0.12 3.90 5.44 86.38 0.47 4.37 16 5 C -0.62 -13.41 6.13 71.98 0.44 -12.96 16 6 S 2.43 50.69 5.36 -56.49 -0.30 50.39 16 7 C -0.63 -5.65 10.62 113.37 1.20 -4.44 16 8 O -0.98 -25.79 18.10 -127.37 -2.31 -28.10 16 9 O -0.99 -32.34 18.10 -127.37 -2.30 -34.65 16 10 C 0.53 24.08 5.42 87.66 0.48 24.56 16 11 O -0.55 -30.09 13.01 -3.06 -0.04 -30.13 16 12 C 0.06 2.59 2.14 -13.03 -0.03 2.57 16 13 H 0.07 2.81 6.03 -2.39 -0.01 2.80 16 14 C -0.53 -25.35 5.45 25.60 0.14 -25.21 16 15 H 0.07 3.30 7.52 -2.91 -0.02 3.28 16 16 C 0.04 1.92 4.02 84.66 0.34 2.26 16 17 N -0.85 -48.82 9.94 21.45 0.21 -48.60 16 18 Si 0.93 41.86 29.54 68.60 2.03 43.88 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.02 -1.03 4.19 -19.87 -0.08 -1.11 16 23 C -0.13 -5.59 8.43 22.27 0.19 -5.41 16 24 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 25 C -0.15 -5.27 10.05 22.27 0.22 -5.04 16 26 C -0.15 -5.78 10.05 22.27 0.22 -5.56 16 27 C -0.09 -4.26 8.15 22.27 0.18 -4.08 16 28 H 0.05 2.06 5.71 -2.39 -0.01 2.05 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.98 8.06 -2.39 -0.02 1.97 16 32 H 0.08 2.29 5.82 -2.39 -0.01 2.27 16 33 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 34 H 0.05 2.18 7.36 -2.39 -0.02 2.16 16 35 H 0.13 3.01 8.14 -2.39 -0.02 3.00 16 36 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.10 4.14 7.09 -2.91 -0.02 4.12 16 42 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 45 H 0.11 5.17 6.37 -2.91 -0.02 5.15 16 Total: -1.00 -81.75 375.66 1.49 -80.26 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.98 Total: 27.53 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 5.25 Total: -36.10 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.82 Total: -73.08 kcal Atomic # 8 Polarization: -88.22 SS G_CDS: -4.65 Total: -92.87 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.30 Total: 50.39 kcal Total: -81.75 1.49 -80.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362500468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.854 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds