Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35913 * 117.00107 * 2 1 4 4 C 1.38895 * 119.97121 * 0.02562 * 3 2 1 5 5 C 1.38288 * 120.29646 * 180.02562 * 4 3 2 6 6 C 1.37939 * 120.23314 * 359.67304 * 5 4 3 7 7 C 1.39841 * 119.93509 * 0.57767 * 6 5 4 8 8 C 1.47184 * 120.14248 * 179.72176 * 7 6 5 9 9 O 1.21253 * 119.99737 * 179.72958 * 8 7 6 10 10 C 1.50693 * 120.00198 * 359.72718 * 8 7 6 11 11 N 1.46500 * 109.47570 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00383 * 179.97438 * 11 10 8 13 13 O 1.21607 * 120.00000 * 0.02562 * 12 11 10 14 14 C 1.47428 * 119.99640 * 180.02562 * 12 11 10 15 15 C 1.39224 * 120.28912 * 355.66882 * 14 12 11 16 16 C 1.38219 * 120.09704 * 180.27987 * 15 14 12 17 17 C 1.38832 * 120.67466 * 359.72146 * 16 15 14 18 18 C 1.37608 * 120.56666 * 359.97438 * 17 16 15 19 19 C 1.40697 * 119.88181 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.32824 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00164 * 216.33495 * 20 19 18 22 22 C 1.40274 * 119.99657 * 36.33002 * 20 19 18 23 23 N 1.30635 * 119.99811 * 190.50227 * 22 20 19 24 24 Si 1.86797 * 120.00082 * 10.50432 * 22 20 19 25 25 H 1.48495 * 109.47333 * 267.22573 * 24 22 20 26 26 H 1.48502 * 109.47199 * 27.22632 * 24 22 20 27 27 H 1.48510 * 109.47027 * 147.22394 * 24 22 20 28 28 C 1.38383 * 119.97083 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47226 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47309 * 59.99605 * 1 2 3 31 31 H 1.09006 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.85240 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.88413 * 179.97438 * 5 4 3 34 34 H 1.07991 * 120.03192 * 180.33091 * 6 5 4 35 35 H 1.09007 * 109.47328 * 59.99914 * 10 8 7 36 36 H 1.09004 * 109.47090 * 300.00346 * 10 8 7 37 37 H 0.97000 * 119.99270 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.95331 * 0.02562 * 15 14 12 39 39 H 1.07992 * 119.66583 * 179.74449 * 16 15 14 40 40 H 1.07996 * 119.71842 * 180.02562 * 17 16 15 41 41 H 1.08000 * 120.05105 * 180.02562 * 18 17 16 42 42 H 0.96993 * 119.99591 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.12078 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2890 2.3755 0.0005 5 6 1.9098 3.6112 0.0000 6 6 3.2865 3.6968 0.0057 7 6 4.0583 2.5306 -0.0001 8 6 5.5276 2.6166 -0.0002 9 8 6.1942 1.6038 -0.0003 10 6 6.2035 3.9635 -0.0002 11 7 7.6570 3.7805 -0.0009 12 6 8.4715 4.8543 -0.0016 13 8 7.9998 5.9752 -0.0011 14 6 9.9342 4.6700 -0.0029 15 6 10.4811 3.3929 0.0873 16 6 11.8530 3.2251 0.0916 17 6 12.7009 4.3207 0.0007 18 6 12.1900 5.5948 -0.0960 19 6 10.7970 5.7928 -0.1025 20 6 10.2638 7.0932 -0.2016 21 1 9.3657 7.3512 0.3399 22 6 10.8995 8.0526 -1.0034 23 7 10.5325 9.3047 -0.9388 24 14 12.2708 7.5400 -2.1636 25 1 13.5802 7.6914 -1.4799 26 1 12.0801 6.1213 -2.5592 27 1 12.2421 8.3995 -3.3743 28 6 3.4280 1.2827 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2107 2.3157 0.0005 33 1 1.3147 4.5123 0.0000 34 1 3.7679 4.6634 0.0107 35 1 5.9073 4.5187 0.8898 36 1 5.9071 4.5188 -0.8902 37 1 8.0332 2.8864 -0.0017 38 1 9.8324 2.5323 0.1582 39 1 12.2698 2.2316 0.1660 40 1 13.7705 4.1718 0.0050 41 1 12.8572 6.4411 -0.1667 42 1 10.9724 9.9682 -1.4930 43 1 4.0177 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362818667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -53.746869 kcal Electronic energy + Delta-G solvation = -27474.817306 eV Core-core repulsion = 23450.593050 eV Total energy + Delta-G solvation = -4024.224256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.72893 -39.71935 -38.76892 -37.41271 -36.91320 -34.08342 -33.43800 -31.76265 -31.09339 -30.45024 -30.16209 -27.72772 -27.62487 -25.30429 -23.72132 -22.75923 -22.21043 -21.02610 -20.14873 -19.64385 -18.22742 -17.59720 -16.96682 -16.59286 -16.33292 -16.16936 -15.84020 -15.50495 -15.35469 -15.05437 -14.55863 -14.10397 -14.07209 -13.91051 -13.87821 -13.49591 -13.40355 -12.96830 -12.66499 -12.64722 -12.39531 -12.31174 -12.13012 -11.89341 -11.51065 -11.45219 -11.33501 -10.93016 -10.69839 -10.43410 -10.18904 -9.97605 -9.78979 -9.40744 -9.24684 -8.64862 -8.53784 -8.50278 -7.80237 -7.58085 -6.89834 -4.47967 0.30851 1.05736 2.10560 2.13819 2.62476 2.78185 3.09726 3.18150 3.30227 3.44754 3.54666 3.94792 4.00206 4.07963 4.36198 4.52755 4.60115 4.64466 4.70905 4.73509 4.90102 5.03189 5.06625 5.27695 5.37951 5.50541 5.54014 5.55372 5.83949 5.84625 5.93638 5.98760 6.00847 6.08618 6.24735 6.39281 6.53212 6.80426 6.95379 6.96485 7.11012 7.23378 7.28585 7.41623 7.61251 7.76246 8.03152 8.28443 8.47972 8.64633 8.86770 9.30581 10.06839 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.002300 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.903593 B =12170.954184 C =13249.737424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.112 3.888 4 C -0.179 4.179 5 C -0.091 4.091 6 C -0.106 4.106 7 C -0.125 4.125 8 C 0.393 3.607 9 O -0.443 6.443 10 C 0.082 3.918 11 N -0.744 5.744 12 C 0.564 3.436 13 O -0.529 6.529 14 C -0.250 4.250 15 C -0.040 4.040 16 C -0.253 4.253 17 C -0.065 4.065 18 C -0.226 4.226 19 C 0.118 3.882 20 C -0.402 4.402 21 H 0.125 0.875 22 C 0.079 3.921 23 N -0.793 5.793 24 Si 0.906 3.094 25 H -0.268 1.268 26 H -0.242 1.242 27 H -0.289 1.289 28 C -0.093 4.093 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.401 0.599 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.771 -12.602 0.507 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.067 3.933 4 C -0.198 4.198 5 C -0.109 4.109 6 C -0.124 4.124 7 C -0.127 4.127 8 C 0.270 3.730 9 O -0.317 6.317 10 C -0.043 4.043 11 N -0.402 5.402 12 C 0.358 3.642 13 O -0.406 6.406 14 C -0.255 4.255 15 C -0.059 4.059 16 C -0.272 4.272 17 C -0.083 4.083 18 C -0.245 4.245 19 C 0.113 3.887 20 C -0.429 4.429 21 H 0.142 0.858 22 C -0.142 4.142 23 N -0.417 5.417 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.165 1.165 27 H -0.216 1.216 28 C -0.112 4.112 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.239 0.761 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.713 -12.207 0.449 21.517 hybrid contribution 0.378 -0.351 -0.544 0.750 sum -17.335 -12.557 -0.096 21.405 Atomic orbital electron populations 1.23088 0.78191 1.04179 1.01392 1.86106 1.21501 1.26536 1.88831 1.18865 0.92055 0.84491 0.97842 1.21508 1.00351 0.92396 1.05524 1.20957 0.94503 0.97258 0.98198 1.21508 0.93914 0.98206 0.98818 1.20177 0.94538 0.93474 1.04474 1.22657 0.88127 0.90994 0.71189 1.90515 1.67004 1.38527 1.35692 1.21365 0.83371 0.94918 1.04672 1.45847 1.04031 1.10661 1.79691 1.18344 0.86911 0.83295 0.75648 1.90723 1.77069 1.23254 1.49561 1.19340 0.90710 0.93486 1.21934 1.20836 0.94879 0.94908 0.95252 1.20305 0.93138 0.97135 1.16668 1.20756 0.97734 0.93051 0.96781 1.21148 0.95204 0.96004 1.12129 1.17549 0.90364 0.92571 0.88221 1.20190 1.10121 0.91394 1.21172 0.85796 1.26380 0.96457 0.93993 0.97326 1.69569 1.37007 1.02063 1.33040 0.86398 0.80377 0.80931 0.79068 1.19417 1.16532 1.21618 1.20631 0.91485 0.98360 1.00680 0.92534 0.92540 0.88063 0.85026 0.84787 0.84133 0.88153 0.88127 0.76138 0.88475 0.88449 0.88531 0.87742 0.90280 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.95 10.49 -19.47 -0.20 -3.15 16 3 C 0.11 1.11 6.68 -39.28 -0.26 0.85 16 4 C -0.18 -1.42 9.04 -39.32 -0.36 -1.77 16 5 C -0.09 -0.71 10.02 -39.67 -0.40 -1.11 16 6 C -0.11 -0.99 9.47 -39.09 -0.37 -1.36 16 7 C -0.13 -1.41 5.87 -105.08 -0.62 -2.03 16 8 C 0.39 5.20 7.19 -30.68 -0.22 4.98 16 9 O -0.44 -6.87 15.66 5.58 0.09 -6.79 16 10 C 0.08 1.18 4.76 -5.20 -0.02 1.16 16 11 N -0.74 -13.46 5.48 -62.56 -0.34 -13.80 16 12 C 0.56 12.86 7.72 -12.52 -0.10 12.76 16 13 O -0.53 -13.66 13.53 5.27 0.07 -13.59 16 14 C -0.25 -5.96 5.92 -104.37 -0.62 -6.58 16 15 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 16 C -0.25 -5.12 10.03 -39.37 -0.39 -5.52 16 17 C -0.06 -1.36 10.01 -39.59 -0.40 -1.76 16 18 C -0.23 -5.38 7.00 -38.88 -0.27 -5.65 16 19 C 0.12 3.05 5.03 -106.54 -0.54 2.51 16 20 C -0.40 -11.24 8.31 -37.81 -0.31 -11.55 16 21 H 0.12 3.80 5.96 -52.49 -0.31 3.49 16 22 C 0.08 2.10 5.47 -17.30 -0.09 2.01 16 23 N -0.79 -21.43 13.92 55.56 0.77 -20.66 16 24 Si 0.91 20.77 24.52 -169.99 -4.17 16.61 16 25 H -0.27 -5.85 6.76 56.52 0.38 -5.47 16 26 H -0.24 -5.71 6.73 56.52 0.38 -5.33 16 27 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 28 C -0.09 -1.05 9.54 -38.94 -0.37 -1.42 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.70 6.28 -52.49 -0.33 0.37 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.14 1.13 7.04 -52.49 -0.37 0.76 16 35 H 0.10 1.36 8.08 -51.92 -0.42 0.94 16 36 H 0.10 1.39 8.09 -51.93 -0.42 0.97 16 37 H 0.40 6.85 5.49 -40.82 -0.22 6.62 16 38 H 0.10 1.73 6.42 -52.49 -0.34 1.39 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 2.44 5.01 -52.49 -0.26 2.18 16 42 H 0.29 6.95 8.29 -40.82 -0.34 6.61 16 43 H 0.14 1.66 7.65 -52.48 -0.40 1.26 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.46 361.53 -7.80 -40.26 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.74 Total: 10.23 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -4.72 Total: -14.55 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.43 Total: -34.46 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.46 -7.80 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362818667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.489 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds