Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35913 * 117.00107 * 2 1 4 4 C 1.38895 * 119.97121 * 0.02562 * 3 2 1 5 5 C 1.38288 * 120.29646 * 180.02562 * 4 3 2 6 6 C 1.37939 * 120.23314 * 359.67304 * 5 4 3 7 7 C 1.39841 * 119.93509 * 0.57767 * 6 5 4 8 8 C 1.47184 * 120.14248 * 179.72176 * 7 6 5 9 9 O 1.21253 * 119.99737 * 179.72958 * 8 7 6 10 10 C 1.50693 * 120.00198 * 359.72718 * 8 7 6 11 11 N 1.46500 * 109.47570 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00383 * 179.97438 * 11 10 8 13 13 O 1.21607 * 120.00000 * 0.02562 * 12 11 10 14 14 C 1.47428 * 119.99640 * 180.02562 * 12 11 10 15 15 C 1.39224 * 120.28912 * 355.66882 * 14 12 11 16 16 C 1.38219 * 120.09704 * 180.27987 * 15 14 12 17 17 C 1.38832 * 120.67466 * 359.72146 * 16 15 14 18 18 C 1.37608 * 120.56666 * 359.97438 * 17 16 15 19 19 C 1.40697 * 119.88181 * 0.02562 * 18 17 16 20 20 C 1.40892 * 120.32824 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00164 * 216.33495 * 20 19 18 22 22 C 1.40274 * 119.99657 * 36.33002 * 20 19 18 23 23 N 1.30635 * 119.99811 * 190.50227 * 22 20 19 24 24 Si 1.86797 * 120.00082 * 10.50432 * 22 20 19 25 25 H 1.48495 * 109.47333 * 267.22573 * 24 22 20 26 26 H 1.48502 * 109.47199 * 27.22632 * 24 22 20 27 27 H 1.48510 * 109.47027 * 147.22394 * 24 22 20 28 28 C 1.38383 * 119.97083 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47226 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47309 * 59.99605 * 1 2 3 31 31 H 1.09006 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.85240 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.88413 * 179.97438 * 5 4 3 34 34 H 1.07991 * 120.03192 * 180.33091 * 6 5 4 35 35 H 1.09007 * 109.47328 * 59.99914 * 10 8 7 36 36 H 1.09004 * 109.47090 * 300.00346 * 10 8 7 37 37 H 0.97000 * 119.99270 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.95331 * 0.02562 * 15 14 12 39 39 H 1.07992 * 119.66583 * 179.74449 * 16 15 14 40 40 H 1.07996 * 119.71842 * 180.02562 * 17 16 15 41 41 H 1.08000 * 120.05105 * 180.02562 * 18 17 16 42 42 H 0.96993 * 119.99591 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.12078 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2890 2.3755 0.0005 5 6 1.9098 3.6112 0.0000 6 6 3.2865 3.6968 0.0057 7 6 4.0583 2.5306 -0.0001 8 6 5.5276 2.6166 -0.0002 9 8 6.1942 1.6038 -0.0003 10 6 6.2035 3.9635 -0.0002 11 7 7.6570 3.7805 -0.0009 12 6 8.4715 4.8543 -0.0016 13 8 7.9998 5.9752 -0.0011 14 6 9.9342 4.6700 -0.0029 15 6 10.4811 3.3929 0.0873 16 6 11.8530 3.2251 0.0916 17 6 12.7009 4.3207 0.0007 18 6 12.1900 5.5948 -0.0960 19 6 10.7970 5.7928 -0.1025 20 6 10.2638 7.0932 -0.2016 21 1 9.3657 7.3512 0.3399 22 6 10.8995 8.0526 -1.0034 23 7 10.5325 9.3047 -0.9388 24 14 12.2708 7.5400 -2.1636 25 1 13.5802 7.6914 -1.4799 26 1 12.0801 6.1213 -2.5592 27 1 12.2421 8.3995 -3.3743 28 6 3.4280 1.2827 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2107 2.3157 0.0005 33 1 1.3147 4.5123 0.0000 34 1 3.7679 4.6634 0.0107 35 1 5.9073 4.5187 0.8898 36 1 5.9071 4.5188 -0.8902 37 1 8.0332 2.8864 -0.0017 38 1 9.8324 2.5323 0.1582 39 1 12.2698 2.2316 0.1660 40 1 13.7705 4.1718 0.0050 41 1 12.8572 6.4411 -0.1667 42 1 10.9724 9.9682 -1.4930 43 1 4.0177 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362818667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -75.224778 kcal Electronic energy + Delta-G solvation = -27475.748658 eV Core-core repulsion = 23450.593050 eV Total energy + Delta-G solvation = -4025.155608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.62368 -40.89637 -40.20982 -38.70530 -38.12337 -35.80798 -35.19265 -32.65865 -32.29862 -32.10641 -31.49572 -28.90564 -28.19319 -27.11040 -24.80725 -23.85028 -23.44875 -22.73288 -21.37928 -21.01173 -19.51580 -19.14255 -18.34461 -17.47458 -17.32045 -17.15511 -16.85544 -16.73066 -16.60926 -16.25563 -16.05838 -15.81716 -15.41704 -15.26757 -15.11696 -14.71595 -14.49172 -14.38231 -14.02550 -13.95417 -13.66970 -13.46179 -13.21946 -13.19884 -12.79184 -12.68498 -12.52282 -12.20547 -12.06393 -12.04243 -11.96391 -11.61610 -11.09909 -11.05895 -10.38268 -10.18365 -10.09408 -9.54299 -9.42400 -9.33029 -8.81910 -6.47781 -0.53525 0.32100 0.34574 0.82993 1.20263 1.25521 1.38265 1.47775 2.03743 2.11519 2.22498 2.36271 2.69076 2.71309 2.90427 3.52667 3.70352 3.78354 4.00641 4.12995 4.18440 4.23587 4.26547 4.31860 4.38538 4.40562 4.42816 4.43990 4.54108 4.71721 4.73789 4.82779 4.84793 5.00293 5.14342 5.22163 5.29987 5.31641 5.43797 5.47389 5.59784 5.67858 5.85670 5.95119 6.21591 6.26136 6.34951 6.47079 6.61499 6.77938 6.86638 7.54871 8.21767 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.002300 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.903593 B =12170.954184 C =13249.737424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.105 3.895 4 C -0.168 4.168 5 C -0.087 4.087 6 C -0.109 4.109 7 C -0.140 4.140 8 C 0.406 3.594 9 O -0.472 6.472 10 C 0.077 3.923 11 N -0.730 5.730 12 C 0.560 3.440 13 O -0.568 6.568 14 C -0.269 4.269 15 C -0.042 4.042 16 C -0.232 4.232 17 C -0.060 4.060 18 C -0.245 4.245 19 C 0.101 3.899 20 C -0.446 4.446 21 H 0.078 0.922 22 C 0.038 3.962 23 N -0.844 5.844 24 Si 0.964 3.036 25 H -0.248 1.248 26 H -0.252 1.252 27 H -0.279 1.279 28 C -0.113 4.113 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.150 0.850 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.408 0.592 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.294 0.706 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -15.269 0.153 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.059 3.941 4 C -0.186 4.186 5 C -0.105 4.105 6 C -0.127 4.127 7 C -0.142 4.142 8 C 0.285 3.715 9 O -0.348 6.348 10 C -0.047 4.047 11 N -0.387 5.387 12 C 0.353 3.647 13 O -0.448 6.448 14 C -0.273 4.273 15 C -0.061 4.061 16 C -0.251 4.251 17 C -0.078 4.078 18 C -0.264 4.264 19 C 0.097 3.903 20 C -0.475 4.475 21 H 0.096 0.904 22 C -0.176 4.176 23 N -0.470 5.470 24 Si 0.787 3.213 25 H -0.172 1.172 26 H -0.176 1.176 27 H -0.206 1.206 28 C -0.132 4.132 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.246 0.754 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.103 -14.914 0.108 23.456 hybrid contribution 0.321 0.145 -0.329 0.482 sum -17.782 -14.769 -0.221 23.116 Atomic orbital electron populations 1.23410 0.75960 1.05794 1.02650 1.86082 1.23871 1.26500 1.88770 1.18961 0.91702 0.85552 0.97850 1.21884 1.01877 0.91521 1.03321 1.21346 0.93972 0.98522 0.96620 1.21716 0.94833 0.97823 0.98344 1.19961 0.93092 0.94399 1.06698 1.22611 0.89103 0.89701 0.70072 1.90498 1.67743 1.39012 1.37558 1.21602 0.81220 0.96330 1.05584 1.45648 1.05417 1.09729 1.77879 1.18408 0.87324 0.83576 0.75380 1.90722 1.77700 1.25007 1.51396 1.19752 0.91428 0.94536 1.21634 1.21206 0.96147 0.94509 0.94236 1.20913 0.92625 0.98957 1.12635 1.21251 1.00186 0.91886 0.94508 1.21268 0.94179 0.97669 1.13315 1.17807 0.91973 0.92310 0.88195 1.19954 1.09912 0.93565 1.24082 0.90446 1.27070 0.98551 0.93757 0.98268 1.69613 1.39273 1.02999 1.35103 0.85527 0.78503 0.79796 0.77505 1.17239 1.17562 1.20577 1.20608 0.92543 0.97833 1.02181 0.91183 0.91213 0.86515 0.81899 0.81675 0.83215 0.87178 0.87382 0.75357 0.85249 0.84094 0.84440 0.87753 0.89561 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.90 10.49 -92.57 -0.97 -6.87 16 3 C 0.10 1.94 6.68 22.46 0.15 2.09 16 4 C -0.17 -2.18 9.04 22.44 0.20 -1.98 16 5 C -0.09 -1.12 10.02 22.21 0.22 -0.89 16 6 C -0.11 -1.88 9.47 22.59 0.21 -1.66 16 7 C -0.14 -3.13 5.87 -20.16 -0.12 -3.24 16 8 C 0.41 10.80 7.19 28.04 0.20 11.00 16 9 O -0.47 -14.74 15.66 -2.94 -0.05 -14.79 16 10 C 0.08 2.24 4.76 85.63 0.41 2.64 16 11 N -0.73 -26.50 5.48 -470.10 -2.57 -29.07 16 12 C 0.56 26.27 7.72 86.66 0.67 26.94 16 13 O -0.57 -31.15 13.53 -4.05 -0.05 -31.21 16 14 C -0.27 -12.86 5.92 -19.70 -0.12 -12.98 16 15 C -0.04 -1.64 9.52 22.50 0.21 -1.43 16 16 C -0.23 -8.30 10.03 22.41 0.22 -8.08 16 17 C -0.06 -2.30 10.01 22.26 0.22 -2.08 16 18 C -0.25 -11.41 7.00 22.72 0.16 -11.25 16 19 C 0.10 5.36 5.03 -21.11 -0.11 5.25 16 20 C -0.45 -26.60 8.31 23.42 0.19 -26.41 16 21 H 0.08 5.21 5.96 -2.91 -0.02 5.20 16 22 C 0.04 2.14 5.47 85.37 0.47 2.60 16 23 N -0.84 -48.44 13.92 21.88 0.30 -48.14 16 24 Si 0.96 43.58 24.52 68.60 1.68 45.26 16 25 H -0.25 -10.22 6.76 99.48 0.67 -9.55 16 26 H -0.25 -11.58 6.73 99.48 0.67 -10.92 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 28 C -0.11 -2.56 9.54 22.68 0.22 -2.34 16 29 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 30 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 31 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.16 1.04 6.28 -2.91 -0.02 1.03 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.15 2.24 7.04 -2.92 -0.02 2.21 16 35 H 0.11 3.03 8.08 -2.38 -0.02 3.01 16 36 H 0.11 3.03 8.09 -2.39 -0.02 3.01 16 37 H 0.41 13.58 5.49 -92.71 -0.51 13.07 16 38 H 0.13 4.15 6.42 -2.91 -0.02 4.13 16 39 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.10 4.79 5.01 -2.91 -0.01 4.77 16 42 H 0.29 15.04 8.29 -92.71 -0.77 14.28 16 43 H 0.13 3.15 7.65 -2.91 -0.02 3.13 16 Total: -1.00 -76.40 361.53 3.37 -73.02 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.49 Total: 32.35 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 4.54 Total: -20.57 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.27 Total: -77.21 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -1.07 Total: -52.87 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.68 Total: 45.26 kcal Total: -76.40 3.37 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362818667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.200 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds