Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00260 * 2 1 4 4 H 1.09006 * 109.21715 * 355.49149 * 3 2 1 5 5 C 1.50634 * 109.25775 * 114.93811 * 3 2 1 6 6 C 1.38908 * 117.74697 * 317.78489 * 5 3 2 7 7 C 1.37932 * 120.54690 * 180.21409 * 6 5 3 8 8 C 1.38262 * 119.76944 * 359.97438 * 7 6 5 9 9 C 1.37939 * 119.77091 * 359.89426 * 8 7 6 10 10 C 1.37660 * 122.57081 * 137.79728 * 5 3 2 11 11 C 1.50630 * 122.56885 * 359.58906 * 10 5 3 12 12 C 1.52755 * 110.57683 * 17.63100 * 11 10 5 13 13 C 1.52728 * 109.25113 * 236.05322 * 3 2 1 14 14 H 1.09004 * 109.68064 * 308.44349 * 13 3 2 15 15 S 1.81397 * 109.68710 * 68.96004 * 13 3 2 16 16 O 1.42099 * 110.53975 * 68.37342 * 15 13 3 17 17 O 1.42100 * 110.54309 * 291.62924 * 15 13 3 18 18 N 1.65592 * 104.45480 * 180.02562 * 15 13 3 19 19 C 1.46499 * 119.99944 * 64.99803 * 18 15 13 20 20 H 1.08996 * 109.47177 * 335.00106 * 19 18 15 21 21 C 1.52996 * 109.47045 * 95.00253 * 19 18 15 22 22 C 1.50702 * 109.47279 * 215.00273 * 19 18 15 23 23 H 1.07999 * 120.00079 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00085 * 180.02562 * 22 19 18 25 25 N 1.31522 * 119.99859 * 359.97438 * 24 22 19 26 26 Si 1.86794 * 120.00128 * 179.97438 * 24 22 19 27 27 H 1.48507 * 109.47270 * 89.99373 * 26 24 22 28 28 H 1.48492 * 109.47313 * 209.99868 * 26 24 22 29 29 H 1.48507 * 109.47167 * 329.99993 * 26 24 22 30 30 H 1.08998 * 109.47005 * 61.27365 * 1 2 3 31 31 H 1.09005 * 109.47093 * 181.27753 * 1 2 3 32 32 H 1.09004 * 109.47355 * 301.27174 * 1 2 3 33 33 H 1.07997 * 119.73059 * 0.21125 * 6 5 3 34 34 H 1.08002 * 120.11938 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.11566 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.72639 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.26018 * 137.92313 * 11 10 5 38 38 H 1.09008 * 109.25364 * 257.38996 * 11 10 5 39 39 H 1.09004 * 109.68002 * 189.16989 * 12 11 10 40 40 H 1.08997 * 109.70400 * 68.59955 * 12 11 10 41 41 H 0.97000 * 120.00055 * 245.00349 * 18 15 13 42 42 H 1.09005 * 109.47240 * 60.00153 * 21 19 18 43 43 H 1.08999 * 109.47456 * 300.00344 * 21 19 18 44 44 H 1.09002 * 109.47570 * 180.02562 * 21 19 18 45 45 H 0.96998 * 119.99220 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2188 2.0506 -0.0809 5 6 2.7601 1.5153 1.2895 6 6 2.1638 1.0734 2.4637 7 6 2.7973 1.2402 3.6775 8 6 4.0363 1.8518 3.7269 9 6 4.6313 2.2888 2.5617 10 6 3.9953 2.1209 1.3383 11 6 4.7048 2.6163 0.1053 12 6 3.7254 2.7538 -1.0589 13 6 2.9506 1.4379 -1.1961 14 1 3.6481 0.6003 -1.2093 15 16 1.9865 1.4540 -2.7326 16 8 1.2202 2.6469 -2.8278 17 8 1.3948 0.1829 -2.9634 18 7 3.1204 1.5996 -3.9306 19 6 4.0917 0.5260 -4.1542 20 1 4.2253 -0.0408 -3.2328 21 6 3.5792 -0.4043 -5.2554 22 6 5.4111 1.1214 -4.5734 23 1 5.5156 2.1925 -4.6645 24 6 6.4846 0.2988 -4.8415 25 7 6.3573 -1.0056 -4.7309 26 14 8.1198 1.0368 -5.3618 27 1 8.9461 1.3079 -4.1579 28 1 8.8340 0.0828 -6.2477 29 1 7.8795 2.3067 -6.0933 30 1 -0.3633 0.4939 -0.9012 31 1 -0.3633 -1.0275 0.0229 32 1 -0.3634 0.5335 0.8784 33 1 1.1961 0.5953 2.4259 34 1 2.3271 0.8944 4.5862 35 1 4.5372 1.9856 4.6743 36 1 5.5990 2.7668 2.6011 37 1 5.1535 3.5875 0.3144 38 1 5.4887 1.9094 -0.1668 39 1 4.2747 2.9542 -1.9789 40 1 3.0308 3.5699 -0.8603 41 1 3.1416 2.3958 -4.4842 42 1 3.4456 0.1626 -6.1769 43 1 2.6248 -0.8349 -4.9523 44 1 4.3016 -1.2034 -5.4215 45 1 7.1127 -1.5842 -4.9192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363968033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -98.191750 kcal Electronic energy + Delta-G solvation = -28992.013872 eV Core-core repulsion = 25101.306292 eV Total energy + Delta-G solvation = -3890.707580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.34352 -37.81218 -36.63035 -35.83860 -35.47768 -35.16300 -32.21696 -31.89293 -30.42830 -28.86515 -28.24027 -26.49760 -25.22276 -23.76935 -23.05925 -22.11158 -20.95468 -19.87883 -18.58760 -17.64974 -17.11712 -16.76731 -16.40594 -15.96345 -15.41648 -15.31442 -15.14840 -14.78369 -14.66120 -14.53676 -13.78502 -13.57786 -13.35915 -13.09484 -12.84902 -12.65375 -12.42689 -12.23519 -12.18149 -11.78953 -11.68627 -11.59774 -11.47334 -11.42331 -11.31862 -11.14411 -11.10253 -11.00394 -10.68474 -10.56587 -10.26873 -10.22728 -10.11084 -9.65759 -9.15210 -8.82616 -8.64206 -8.61531 -8.27914 -6.15440 -4.24639 0.80574 1.25064 1.33836 3.21512 3.29294 3.30799 3.39456 3.47088 3.84438 4.15712 4.32715 4.42323 4.50543 4.67028 4.80738 4.87403 4.91829 4.95634 5.07914 5.15901 5.21131 5.26716 5.32819 5.37971 5.54197 5.59879 5.70092 5.73882 5.79586 5.95417 6.02152 6.04244 6.20683 6.31357 6.41689 6.44123 6.61362 6.83601 6.93381 7.02058 7.09696 7.12152 7.57260 7.70589 7.80966 8.03387 8.26418 8.79236 9.42292 10.89900 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.004620 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.282269 B = 6058.635831 C = 7476.143659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.366 6.366 3 C 0.150 3.850 4 H 0.081 0.919 5 C -0.085 4.085 6 C -0.099 4.099 7 C -0.130 4.130 8 C -0.116 4.116 9 C -0.125 4.125 10 C -0.056 4.056 11 C -0.078 4.078 12 C -0.096 4.096 13 C -0.604 4.604 14 H 0.153 0.847 15 S 2.607 3.393 16 O -0.982 6.982 17 O -0.948 6.948 18 N -1.100 6.100 19 C 0.275 3.725 20 H 0.039 0.961 21 C -0.157 4.157 22 C -0.527 4.527 23 H 0.065 0.935 24 C 0.065 3.935 25 N -0.885 5.885 26 Si 0.898 3.102 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.408 0.592 42 H 0.031 0.969 43 H 0.027 0.973 44 H 0.090 0.910 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 6.082 14.232 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.284 6.284 3 C 0.090 3.910 4 H 0.099 0.901 5 C -0.086 4.086 6 C -0.118 4.118 7 C -0.148 4.148 8 C -0.134 4.134 9 C -0.143 4.143 10 C -0.056 4.056 11 C -0.116 4.116 12 C -0.134 4.134 13 C -0.711 4.711 14 H 0.171 0.829 15 S 2.699 3.301 16 O -0.972 6.972 17 O -0.937 6.937 18 N -0.860 5.860 19 C 0.171 3.829 20 H 0.057 0.943 21 C -0.217 4.217 22 C -0.567 4.567 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.522 5.522 26 Si 0.726 3.274 27 H -0.206 1.206 28 H -0.211 1.211 29 H -0.198 1.198 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.109 0.891 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.931 5.482 14.194 16.720 hybrid contribution 1.472 0.667 -0.095 1.619 sum -5.459 6.149 14.098 16.321 Atomic orbital electron populations 1.23052 0.80656 1.03976 0.99993 1.88112 1.19877 1.25748 1.94712 1.20377 0.93575 0.86059 0.90957 0.90089 1.19575 0.95048 0.99971 0.94012 1.21068 1.00171 0.98701 0.91819 1.21018 0.95868 1.00442 0.97519 1.21078 0.95596 0.98571 0.98120 1.21147 1.00047 1.01198 0.91897 1.19684 0.93277 0.97317 0.95310 1.20485 0.97857 1.01928 0.91316 1.21289 0.98182 0.92912 1.01028 1.30886 1.13620 1.08183 1.18421 0.82875 1.04981 0.74847 0.74229 0.76084 1.93520 1.68827 1.48719 1.86172 1.93588 1.74467 1.42737 1.82950 1.55580 1.52102 1.30556 1.47785 1.18520 0.85716 0.83159 0.95548 0.94335 1.22219 0.99572 1.01276 0.98639 1.21287 0.94430 0.93544 1.47443 0.91724 1.24925 0.99004 0.94810 0.95055 1.69891 1.31389 1.02651 1.48288 0.86497 0.83322 0.79002 0.78572 1.20611 1.21135 1.19815 0.93696 0.88452 0.93690 0.86110 0.86123 0.86139 0.85902 0.89969 0.89191 0.88278 0.90353 0.75850 0.95009 0.95439 0.89121 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.42 101.05 1.05 1.30 16 2 O -0.37 -5.79 9.17 -35.23 -0.32 -6.11 16 3 C 0.15 2.25 2.10 -28.05 -0.06 2.19 16 4 H 0.08 1.10 7.57 -51.93 -0.39 0.71 16 5 C -0.08 -1.19 5.57 -104.62 -0.58 -1.78 16 6 C -0.10 -1.24 9.24 -39.45 -0.36 -1.60 16 7 C -0.13 -1.42 10.05 -39.68 -0.40 -1.81 16 8 C -0.12 -1.22 10.05 -39.68 -0.40 -1.62 16 9 C -0.12 -1.44 9.61 -39.44 -0.38 -1.82 16 10 C -0.06 -0.74 5.74 -104.62 -0.60 -1.34 16 11 C -0.08 -1.00 5.67 -28.04 -0.16 -1.16 16 12 C -0.10 -1.35 5.20 -26.69 -0.14 -1.49 16 13 C -0.60 -9.85 2.32 -26.70 -0.06 -9.91 16 14 H 0.15 2.67 7.40 -51.92 -0.38 2.29 16 15 S 2.61 49.09 4.72 -107.50 -0.51 48.58 16 16 O -0.98 -19.15 17.98 -57.54 -1.03 -20.19 16 17 O -0.95 -20.53 16.80 -58.14 -0.98 -21.51 16 18 N -1.10 -21.95 4.92 -5.88 -0.03 -21.98 16 19 C 0.27 6.48 2.66 -69.08 -0.18 6.29 16 20 H 0.04 0.96 7.15 -51.93 -0.37 0.59 16 21 C -0.16 -3.83 9.29 37.16 0.35 -3.49 16 22 C -0.53 -13.13 8.76 -34.44 -0.30 -13.43 16 23 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 24 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 25 N -0.88 -23.79 11.32 55.43 0.63 -23.17 16 26 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.43 7.49 -51.93 -0.39 0.04 16 33 H 0.12 1.34 6.77 -52.49 -0.36 0.98 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.12 1.16 8.05 -52.48 -0.42 0.74 16 37 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.10 1.41 7.73 -51.93 -0.40 1.01 16 40 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.41 7.48 8.79 -34.46 -0.30 7.17 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.64 7.42 -51.93 -0.39 0.26 16 44 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 45 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -31.15 373.23 -10.61 -41.76 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.64 Total: 10.20 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.32 Total: -28.09 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.60 Total: -45.14 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -2.33 Total: -47.81 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.51 Total: 48.58 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.15 -10.61 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363968033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.431 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds