Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81398 * 109.47078 * 2 1 4 4 O 1.42101 * 108.57832 * 65.51193 * 3 2 1 5 5 O 1.42104 * 108.57831 * 294.48971 * 3 2 1 6 6 C 1.81401 * 101.92044 * 179.97438 * 3 2 1 7 7 C 1.53003 * 109.46812 * 180.02562 * 6 3 2 8 8 H 1.08993 * 109.47317 * 59.99862 * 7 6 3 9 9 C 1.53001 * 109.46729 * 180.02562 * 7 6 3 10 10 N 1.46501 * 109.46971 * 299.99799 * 7 6 3 11 11 C 1.34780 * 119.99642 * 154.99920 * 10 7 6 12 12 O 1.21280 * 120.00197 * 0.02562 * 11 10 7 13 13 C 1.50700 * 120.00166 * 180.02562 * 11 10 7 14 14 H 1.08997 * 109.47059 * 59.99971 * 13 11 10 15 15 C 1.50707 * 109.47164 * 300.00516 * 13 11 10 16 16 H 1.07999 * 119.99967 * 333.16877 * 15 13 11 17 17 C 1.37874 * 120.00182 * 153.16105 * 15 13 11 18 18 N 1.31518 * 119.99682 * 6.16064 * 17 15 13 19 19 Si 1.86797 * 120.00150 * 186.42800 * 17 15 13 20 20 H 1.48507 * 109.47066 * 179.72837 * 19 17 15 21 21 H 1.48504 * 109.47216 * 299.72834 * 19 17 15 22 22 H 1.48491 * 109.47029 * 59.72863 * 19 17 15 23 23 C 1.50694 * 109.47604 * 180.02562 * 13 11 10 24 24 C 1.38240 * 119.99847 * 66.38847 * 23 13 11 25 25 C 1.38242 * 119.99595 * 179.79084 * 24 23 13 26 26 C 1.38228 * 120.00092 * 0.44374 * 25 24 23 27 27 C 1.38238 * 120.00165 * 359.81079 * 26 25 24 28 28 C 1.38227 * 120.00134 * 246.67038 * 23 13 11 29 29 H 1.08990 * 109.47037 * 59.99744 * 1 2 3 30 30 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47071 * 299.99917 * 1 2 3 32 32 H 1.08991 * 109.47015 * 240.00005 * 2 1 3 33 33 H 1.09007 * 109.47023 * 119.99994 * 2 1 3 34 34 H 1.09003 * 109.46790 * 60.00467 * 6 3 2 35 35 H 1.09000 * 109.47189 * 300.00002 * 6 3 2 36 36 H 1.08998 * 109.46854 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.46830 * 299.99707 * 9 7 6 38 38 H 1.08993 * 109.47734 * 59.99627 * 9 7 6 39 39 H 0.97001 * 120.00237 * 335.00369 * 10 7 6 40 40 H 0.96995 * 120.00365 * 355.78985 * 18 17 15 41 41 H 1.07996 * 120.00067 * 0.02562 * 24 23 13 42 42 H 1.07998 * 119.99365 * 180.27890 * 25 24 23 43 43 H 1.07997 * 120.00149 * 179.83244 * 26 25 24 44 44 H 1.08003 * 120.00344 * 179.97438 * 27 26 25 45 45 H 1.08007 * 120.00430 * 359.97247 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7592 2.3232 -1.2258 6 6 3.9330 1.4719 0.0008 7 6 4.6281 2.8349 0.0015 8 1 4.3350 3.3918 0.8915 9 6 6.1448 2.6339 0.0016 10 7 4.2353 3.5840 -1.1946 11 6 4.2839 4.9309 -1.1924 12 8 4.6532 5.5228 -0.2003 13 6 3.8793 5.7016 -2.4226 14 1 2.8415 5.4760 -2.6677 15 6 4.7650 5.3072 -3.5764 16 1 5.7644 4.9428 -3.3900 17 6 4.2994 5.4114 -4.8699 18 7 3.1308 5.9671 -5.1054 19 14 5.3249 4.7567 -6.2873 20 1 4.6039 4.9828 -7.5658 21 1 6.6296 5.4649 -6.3229 22 1 5.5563 3.3019 -6.1002 23 6 4.0244 7.1785 -2.1606 24 6 5.2782 7.7248 -1.9592 25 6 5.4116 9.0804 -1.7231 26 6 4.2906 9.8879 -1.6794 27 6 3.0364 9.3407 -1.8756 28 6 2.9033 7.9859 -2.1159 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 4.2260 0.9147 -0.8891 35 1 4.2253 0.9149 0.8910 36 1 6.6400 3.6049 0.0025 37 1 6.4373 2.0763 0.8913 38 1 6.4376 2.0772 -0.8886 39 1 3.9401 3.1106 -1.9882 40 1 2.5696 6.2481 -4.3659 41 1 6.1537 7.0933 -1.9900 42 1 6.3915 9.5079 -1.5703 43 1 4.3946 10.9465 -1.4923 44 1 2.1605 9.9716 -1.8410 45 1 1.9234 7.5584 -2.2691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411286124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -95.463797 kcal Electronic energy + Delta-G solvation = -28300.936101 eV Core-core repulsion = 24410.346814 eV Total energy + Delta-G solvation = -3890.589287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.42367 -37.98205 -36.98495 -36.06376 -35.63621 -33.90122 -33.40645 -31.17697 -30.67405 -29.96290 -27.96759 -27.03615 -24.35512 -23.67242 -21.95446 -21.54908 -20.52003 -19.59051 -18.92205 -17.36650 -17.10331 -16.52560 -16.33379 -15.85827 -15.79775 -15.34625 -14.57928 -14.48318 -14.20408 -13.81548 -13.70875 -13.50423 -13.40854 -13.04516 -12.88556 -12.75720 -12.73447 -12.43827 -12.19665 -12.05861 -12.03309 -11.97806 -11.89874 -11.82344 -11.49881 -11.13919 -10.92299 -10.88493 -10.79811 -10.39876 -10.25644 -10.16753 -10.08690 -8.94426 -8.80673 -8.58608 -8.52363 -7.96445 -7.59358 -6.49761 -4.24921 -0.17253 2.34666 2.39128 2.64092 3.36358 3.38523 3.50670 3.57544 3.59500 3.67027 3.94309 4.31290 4.39399 4.43602 4.44765 4.77289 4.82492 4.91373 5.14074 5.24489 5.32062 5.35232 5.39346 5.42338 5.66495 5.69878 5.71615 5.76920 5.87860 5.95716 6.15698 6.24544 6.31010 6.46779 6.53685 6.72688 6.93738 7.01419 7.06855 7.35093 7.41254 7.65441 7.89379 8.01143 8.22321 8.27206 8.67462 9.11406 9.47740 10.89442 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.004267 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.522210 B = 6560.731480 C = 7453.750369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.621 4.621 3 S 2.412 3.588 4 O -0.935 6.935 5 O -0.915 6.915 6 C -0.625 4.625 7 C 0.155 3.845 8 H 0.099 0.901 9 C -0.153 4.153 10 N -0.736 5.736 11 C 0.540 3.460 12 O -0.560 6.560 13 C 0.042 3.958 14 H 0.070 0.930 15 C -0.594 4.594 16 H 0.057 0.943 17 C 0.031 3.969 18 N -0.891 5.891 19 Si 1.069 2.931 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.286 1.286 23 C -0.018 4.018 24 C -0.078 4.078 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.127 4.127 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.275 0.725 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -12.550 8.792 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.749 4.749 3 S 2.592 3.408 4 O -0.932 6.932 5 O -0.911 6.911 6 C -0.754 4.754 7 C 0.048 3.952 8 H 0.116 0.884 9 C -0.212 4.212 10 N -0.392 5.392 11 C 0.330 3.670 12 O -0.438 6.438 13 C 0.021 3.979 14 H 0.088 0.912 15 C -0.631 4.631 16 H 0.075 0.925 17 C -0.176 4.176 18 N -0.525 5.525 19 Si 0.897 3.103 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.213 1.213 23 C -0.019 4.019 24 C -0.097 4.097 25 C -0.151 4.151 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.660 -11.476 7.842 13.915 hybrid contribution 0.435 -1.030 1.246 1.674 sum -0.225 -12.506 9.087 15.461 Atomic orbital electron populations 1.21509 0.90362 1.04675 1.03975 1.30304 1.07701 1.25667 1.11227 1.08454 0.78241 0.78033 0.76040 1.93591 1.80934 1.72818 1.45852 1.93655 1.80510 1.72131 1.44849 1.30687 1.25655 1.06902 1.12138 1.20406 0.95599 0.87566 0.91619 0.88355 1.22110 0.94296 1.03040 1.01767 1.46259 1.69785 1.07436 1.15708 1.21360 0.74742 0.81353 0.89586 1.90590 1.48112 1.69233 1.35903 1.18177 1.00298 0.87823 0.91593 0.91177 1.21501 1.01181 1.49567 0.90885 0.92451 1.25843 0.98009 0.93951 0.99829 1.70760 1.10801 1.34727 1.36193 0.83531 0.75033 0.76050 0.75694 1.20646 1.21364 1.21268 1.20112 0.92457 0.96706 0.92658 1.20778 0.97433 0.93920 0.97524 1.20968 0.97668 0.94274 1.02237 1.20810 0.93052 0.98635 1.03972 1.20882 0.96753 0.95116 1.01891 1.20994 0.98177 0.93782 1.01522 0.90537 0.90231 0.90906 0.84979 0.85334 0.84295 0.83989 0.91119 0.92076 0.92008 0.75044 0.91350 0.87043 0.87479 0.87568 0.87406 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.62 -4.45 6.53 37.16 0.24 -4.21 16 3 S 2.41 28.76 4.59 -107.50 -0.49 28.26 16 4 O -0.93 -14.59 18.10 -57.83 -1.05 -15.64 16 5 O -0.91 -14.83 16.47 -57.83 -0.95 -15.78 16 6 C -0.63 -5.97 5.37 37.16 0.20 -5.77 16 7 C 0.15 2.28 2.63 -67.93 -0.18 2.10 16 8 H 0.10 1.61 7.58 -51.93 -0.39 1.21 16 9 C -0.15 -2.01 9.48 37.16 0.35 -1.66 16 10 N -0.74 -13.85 3.97 -53.81 -0.21 -14.07 16 11 C 0.54 12.43 7.01 -10.98 -0.08 12.36 16 12 O -0.56 -13.86 15.09 5.56 0.08 -13.77 16 13 C 0.04 1.05 1.94 -94.07 -0.18 0.87 16 14 H 0.07 1.84 6.63 -51.93 -0.34 1.50 16 15 C -0.59 -15.34 7.45 -34.44 -0.26 -15.59 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 18 N -0.89 -25.38 13.63 55.43 0.76 -24.62 16 19 Si 1.07 23.71 29.91 -169.99 -5.08 18.63 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.02 -0.45 4.17 -104.63 -0.44 -0.88 16 24 C -0.08 -1.84 8.33 -39.58 -0.33 -2.17 16 25 C -0.13 -2.74 10.05 -39.58 -0.40 -3.14 16 26 C -0.15 -2.85 10.05 -39.58 -0.40 -3.24 16 27 C -0.13 -2.60 10.05 -39.58 -0.40 -3.00 16 28 C -0.13 -2.90 9.51 -39.59 -0.38 -3.27 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.14 0.96 8.14 -51.92 -0.42 0.53 16 35 H 0.14 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.41 7.52 7.66 -40.82 -0.31 7.21 16 40 H 0.27 7.83 6.49 -40.82 -0.26 7.56 16 41 H 0.11 2.64 7.88 -52.49 -0.41 2.23 16 42 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 45 H 0.11 2.40 7.96 -52.48 -0.42 1.98 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -36.30 388.60 -9.91 -46.21 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.85 Total: 12.62 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -1.96 Total: -27.69 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.54 Total: -38.69 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.91 Total: -45.19 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.08 Total: 18.63 kcal Atomic # 16 Polarization: 28.76 SS G_CDS: -0.49 Total: 28.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.30 -9.91 -46.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.256 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds