Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81398 * 109.47078 * 2 1 4 4 O 1.42101 * 108.57832 * 65.51193 * 3 2 1 5 5 O 1.42104 * 108.57831 * 294.48971 * 3 2 1 6 6 C 1.81401 * 101.92044 * 179.97438 * 3 2 1 7 7 C 1.53003 * 109.46812 * 180.02562 * 6 3 2 8 8 H 1.08993 * 109.47317 * 59.99862 * 7 6 3 9 9 C 1.53001 * 109.46729 * 180.02562 * 7 6 3 10 10 N 1.46501 * 109.46971 * 299.99799 * 7 6 3 11 11 C 1.34780 * 119.99642 * 154.99920 * 10 7 6 12 12 O 1.21280 * 120.00197 * 0.02562 * 11 10 7 13 13 C 1.50700 * 120.00166 * 180.02562 * 11 10 7 14 14 H 1.08997 * 109.47059 * 59.99971 * 13 11 10 15 15 C 1.50707 * 109.47164 * 300.00516 * 13 11 10 16 16 H 1.07999 * 119.99967 * 333.16877 * 15 13 11 17 17 C 1.37874 * 120.00182 * 153.16105 * 15 13 11 18 18 N 1.31518 * 119.99682 * 6.16064 * 17 15 13 19 19 Si 1.86797 * 120.00150 * 186.42800 * 17 15 13 20 20 H 1.48507 * 109.47066 * 179.72837 * 19 17 15 21 21 H 1.48504 * 109.47216 * 299.72834 * 19 17 15 22 22 H 1.48491 * 109.47029 * 59.72863 * 19 17 15 23 23 C 1.50694 * 109.47604 * 180.02562 * 13 11 10 24 24 C 1.38240 * 119.99847 * 66.38847 * 23 13 11 25 25 C 1.38242 * 119.99595 * 179.79084 * 24 23 13 26 26 C 1.38228 * 120.00092 * 0.44374 * 25 24 23 27 27 C 1.38238 * 120.00165 * 359.81079 * 26 25 24 28 28 C 1.38227 * 120.00134 * 246.67038 * 23 13 11 29 29 H 1.08990 * 109.47037 * 59.99744 * 1 2 3 30 30 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47071 * 299.99917 * 1 2 3 32 32 H 1.08991 * 109.47015 * 240.00005 * 2 1 3 33 33 H 1.09007 * 109.47023 * 119.99994 * 2 1 3 34 34 H 1.09003 * 109.46790 * 60.00467 * 6 3 2 35 35 H 1.09000 * 109.47189 * 300.00002 * 6 3 2 36 36 H 1.08998 * 109.46854 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.46830 * 299.99707 * 9 7 6 38 38 H 1.08993 * 109.47734 * 59.99627 * 9 7 6 39 39 H 0.97001 * 120.00237 * 335.00369 * 10 7 6 40 40 H 0.96995 * 120.00365 * 355.78985 * 18 17 15 41 41 H 1.07996 * 120.00067 * 0.02562 * 24 23 13 42 42 H 1.07998 * 119.99365 * 180.27890 * 25 24 23 43 43 H 1.07997 * 120.00149 * 179.83244 * 26 25 24 44 44 H 1.08003 * 120.00344 * 179.97438 * 27 26 25 45 45 H 1.08007 * 120.00430 * 359.97247 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7592 2.3232 -1.2258 6 6 3.9330 1.4719 0.0008 7 6 4.6281 2.8349 0.0015 8 1 4.3350 3.3918 0.8915 9 6 6.1448 2.6339 0.0016 10 7 4.2353 3.5840 -1.1946 11 6 4.2839 4.9309 -1.1924 12 8 4.6532 5.5228 -0.2003 13 6 3.8793 5.7016 -2.4226 14 1 2.8415 5.4760 -2.6677 15 6 4.7650 5.3072 -3.5764 16 1 5.7644 4.9428 -3.3900 17 6 4.2994 5.4114 -4.8699 18 7 3.1308 5.9671 -5.1054 19 14 5.3249 4.7567 -6.2873 20 1 4.6039 4.9828 -7.5658 21 1 6.6296 5.4649 -6.3229 22 1 5.5563 3.3019 -6.1002 23 6 4.0244 7.1785 -2.1606 24 6 5.2782 7.7248 -1.9592 25 6 5.4116 9.0804 -1.7231 26 6 4.2906 9.8879 -1.6794 27 6 3.0364 9.3407 -1.8756 28 6 2.9033 7.9859 -2.1159 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 4.2260 0.9147 -0.8891 35 1 4.2253 0.9149 0.8910 36 1 6.6400 3.6049 0.0025 37 1 6.4373 2.0763 0.8913 38 1 6.4376 2.0772 -0.8886 39 1 3.9401 3.1106 -1.9882 40 1 2.5696 6.2481 -4.3659 41 1 6.1537 7.0933 -1.9900 42 1 6.3915 9.5079 -1.5703 43 1 4.3946 10.9465 -1.4923 44 1 2.1605 9.9716 -1.8410 45 1 1.9234 7.5584 -2.2691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411286124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -121.825210 kcal Electronic energy + Delta-G solvation = -28302.079218 eV Core-core repulsion = 24410.346814 eV Total energy + Delta-G solvation = -3891.732403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.14569 -39.62130 -38.03090 -37.24656 -36.90705 -35.85936 -34.03177 -32.86046 -32.28293 -31.66330 -28.98332 -28.77566 -25.70971 -25.03602 -23.41198 -23.20615 -21.97766 -21.31911 -19.87488 -19.24237 -18.05856 -17.87178 -17.75230 -17.29651 -16.97725 -16.62988 -16.28808 -15.82959 -15.61019 -15.30614 -15.23012 -14.73943 -14.60325 -14.50617 -14.12778 -14.05698 -13.86845 -13.75494 -13.58294 -13.42373 -13.27275 -13.11351 -13.05913 -13.01505 -12.82754 -12.56380 -12.39975 -12.25286 -11.97154 -11.91505 -11.82245 -11.80481 -11.19913 -10.92524 -10.66284 -10.53600 -10.11416 -9.68016 -9.36193 -8.62288 -6.37396 -1.03420 0.62856 0.68990 1.55518 1.63402 1.77266 1.82443 1.82771 2.30461 2.59716 2.63702 3.04687 3.09265 3.22238 3.39845 3.73695 3.82614 3.95413 4.07323 4.14814 4.19349 4.21468 4.31334 4.36888 4.39191 4.43036 4.58416 4.66250 4.70631 4.73835 4.81708 4.82048 4.88744 4.92382 5.08795 5.21619 5.23370 5.30479 5.52053 5.66590 5.70306 5.73852 6.04121 6.14309 6.29022 6.50847 6.59494 7.35252 7.43422 8.76316 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.004267 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.522210 B = 6560.731480 C = 7453.750369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.584 4.584 3 S 2.380 3.620 4 O -0.990 6.990 5 O -0.978 6.978 6 C -0.606 4.606 7 C 0.138 3.862 8 H 0.074 0.926 9 C -0.148 4.148 10 N -0.727 5.727 11 C 0.534 3.466 12 O -0.586 6.586 13 C 0.039 3.961 14 H 0.040 0.960 15 C -0.587 4.587 16 H 0.054 0.946 17 C -0.015 4.015 18 N -0.921 5.921 19 Si 1.113 2.887 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.258 1.258 23 C -0.046 4.046 24 C -0.105 4.105 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.155 4.155 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.034 0.966 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.261 0.739 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.142 0.858 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -14.777 9.287 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.716 4.716 3 S 2.569 3.431 4 O -0.987 6.987 5 O -0.975 6.975 6 C -0.736 4.736 7 C 0.033 3.967 8 H 0.092 0.908 9 C -0.207 4.207 10 N -0.381 5.381 11 C 0.323 3.677 12 O -0.467 6.467 13 C 0.018 3.982 14 H 0.058 0.942 15 C -0.625 4.625 16 H 0.072 0.928 17 C -0.216 4.216 18 N -0.556 5.556 19 Si 0.935 3.065 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.047 4.047 24 C -0.124 4.124 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.144 4.144 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.212 0.788 36 H 0.053 0.947 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.159 0.841 43 H 0.170 0.830 44 H 0.160 0.840 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.008 -13.692 8.364 16.076 hybrid contribution -0.125 -0.392 1.209 1.277 sum 0.883 -14.084 9.573 17.053 Atomic orbital electron populations 1.21709 0.91194 1.06292 1.03099 1.30004 1.06784 1.19806 1.15030 1.08863 0.79612 0.80659 0.73999 1.93522 1.82242 1.75961 1.46999 1.93589 1.81983 1.75528 1.46432 1.30549 1.22114 1.04355 1.16572 1.20741 0.97650 0.89627 0.88695 0.90804 1.22083 0.92214 1.01914 1.04453 1.46212 1.68378 1.06267 1.17205 1.21077 0.74973 0.82938 0.88717 1.90546 1.49613 1.70148 1.36368 1.18124 0.98374 0.89243 0.92497 0.94202 1.21603 1.00849 1.48669 0.91358 0.92769 1.27220 0.98225 0.93512 1.02639 1.70863 1.11992 1.37104 1.35615 0.82995 0.73809 0.77229 0.72511 1.21294 1.20312 1.18286 1.20179 0.93642 0.96499 0.94412 1.20818 0.96410 0.95547 0.99584 1.21378 0.99949 0.93035 1.00607 1.21320 0.91908 1.00707 1.01814 1.21306 0.98833 0.94092 1.00198 1.21158 0.97541 0.95474 1.03141 0.91970 0.87091 0.91681 0.81534 0.81192 0.80588 0.78822 0.94668 0.88131 0.90473 0.74886 0.92838 0.88516 0.84125 0.83003 0.84034 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.92 71.99 0.71 -1.61 16 2 C -0.58 -6.19 6.53 71.99 0.47 -5.72 16 3 S 2.38 56.27 4.59 -56.49 -0.26 56.01 16 4 O -0.99 -32.39 18.10 -127.37 -2.30 -34.69 16 5 O -0.98 -33.86 16.47 -127.37 -2.10 -35.96 16 6 C -0.61 -9.81 5.37 71.98 0.39 -9.42 16 7 C 0.14 4.04 2.63 44.99 0.12 4.16 16 8 H 0.07 2.53 7.58 -2.39 -0.02 2.51 16 9 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 10 N -0.73 -28.61 3.97 -442.53 -1.76 -30.37 16 11 C 0.53 26.34 7.01 87.66 0.61 26.95 16 12 O -0.59 -30.98 15.09 -3.03 -0.05 -31.02 16 13 C 0.04 2.08 1.94 -13.03 -0.03 2.06 16 14 H 0.04 2.33 6.63 -2.39 -0.02 2.31 16 15 C -0.59 -31.76 7.45 25.60 0.19 -31.57 16 16 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 17 C -0.02 -0.83 5.45 84.65 0.46 -0.37 16 18 N -0.92 -54.96 13.63 21.45 0.29 -54.67 16 19 Si 1.11 48.07 29.91 68.60 2.05 50.12 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 23 C -0.05 -2.41 4.17 -19.87 -0.08 -2.49 16 24 C -0.11 -5.13 8.33 22.27 0.19 -4.94 16 25 C -0.13 -5.31 10.05 22.27 0.22 -5.09 16 26 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 27 C -0.13 -5.06 10.05 22.27 0.22 -4.84 16 28 C -0.15 -7.48 9.51 22.27 0.21 -7.27 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.18 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.19 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 15.81 7.66 -92.71 -0.71 15.10 16 40 H 0.26 15.97 6.49 -92.71 -0.60 15.36 16 41 H 0.10 4.84 7.88 -2.91 -0.02 4.82 16 42 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 44 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 45 H 0.10 4.86 7.96 -2.91 -0.02 4.84 16 Total: -1.00 -88.94 388.60 0.92 -88.03 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: 0.44 Total: 40.57 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 4.60 Total: -48.02 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.47 Total: -85.03 kcal Atomic # 8 Polarization: -97.23 SS G_CDS: -4.45 Total: -101.68 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.26 Total: 56.01 kcal Total: -88.94 0.92 -88.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.799 kcal (2) G-P(sol) polarization free energy of solvation -88.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds